메뉴 건너뛰기




Volumn 201, Issue 3, 2014, Pages 781-794

Spatial transcriptomes of iron-deficient and cadmium-stressed rice

Author keywords

Cadmium (Cd); Iron (Fe); Laser microdissection; Oryza sativa (rice); Transcriptome

Indexed keywords

CADMIUM; GENE EXPRESSION; HOMEOSTASIS; IRON; MOLECULAR ANALYSIS; PROTEIN; RICE;

EID: 84891901837     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.12577     Document Type: Article
Times cited : (59)

References (80)
  • 1
    • 0034810619 scopus 로고    scopus 로고
    • Effect of iron deficiency on the chemical composition of the xylem sap of barley
    • Alam S, Kamei S, Kawai S. 2001. Effect of iron deficiency on the chemical composition of the xylem sap of barley. Soil Science and Plant Nutrition 47: 643-649.
    • (2001) Soil Science and Plant Nutrition , vol.47 , pp. 643-649
    • Alam, S.1    Kamei, S.2    Kawai, S.3
  • 4
    • 0028870197 scopus 로고
    • Subcellular localization and characterization of excessive iron in the nicotianamine-less tomato mutant chloronerva
    • Becker R, Fritz E, Manteuffel R. 1995. Subcellular localization and characterization of excessive iron in the nicotianamine-less tomato mutant chloronerva. Plant Physiology 108: 269-275.
    • (1995) Plant Physiology , vol.108 , pp. 269-275
    • Becker, R.1    Fritz, E.2    Manteuffel, R.3
  • 6
    • 77957744766 scopus 로고    scopus 로고
    • Nitric oxide acts downstream of auxin to trigger root ferric-chelate reductase activity in response to iron deficiency in Arabidopsis
    • Chen WW, Yang JL, Qin C, Jin CW, Mo JH, Ye T, Zheng SJ. 2010. Nitric oxide acts downstream of auxin to trigger root ferric-chelate reductase activity in response to iron deficiency in Arabidopsis. Plant Physiology 154: 810-819.
    • (2010) Plant Physiology , vol.154 , pp. 810-819
    • Chen, W.W.1    Yang, J.L.2    Qin, C.3    Jin, C.W.4    Mo, J.H.5    Ye, T.6    Zheng, S.J.7
  • 7
    • 0037002169 scopus 로고    scopus 로고
    • Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis
    • Cobbett C, Goldsbrough R. 2002. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annual Review of Plant Biology 53: 159-182.
    • (2002) Annual Review of Plant Biology , vol.53 , pp. 159-182
    • Cobbett, C.1    Goldsbrough, R.2
  • 8
    • 0001732069 scopus 로고    scopus 로고
    • The role of iron-deficiency stress responses in stimulating heavy-metal transport in plants
    • Cohen CK, Fox TC, Garvin DF, Kochian LV. 1998. The role of iron-deficiency stress responses in stimulating heavy-metal transport in plants. Plant Physiology 116: 1063-1072.
    • (1998) Plant Physiology , vol.116 , pp. 1063-1072
    • Cohen, C.K.1    Fox, T.C.2    Garvin, D.F.3    Kochian, L.V.4
  • 9
    • 0035983847 scopus 로고    scopus 로고
    • Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation
    • Connolly EL, Fett JP, Guerinot ML. 2002. Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation. Plant Cell 14: 1347-1357.
    • (2002) Plant Cell , vol.14 , pp. 1347-1357
    • Connolly, E.L.1    Fett, J.P.2    Guerinot, M.L.3
  • 10
    • 77956594493 scopus 로고    scopus 로고
    • Ethylene and nitric oxide involvement in the up-regulation of key genes related to iron acquisition and homeostasis in Arabidopsis
    • García MJ, Lucena C, Romera FJ, Alcántara E, Pérez-Vicente R. 2010. Ethylene and nitric oxide involvement in the up-regulation of key genes related to iron acquisition and homeostasis in Arabidopsis. Journal of Experimental Botany 61: 3885-3899.
    • (2010) Journal of Experimental Botany , vol.61 , pp. 3885-3899
    • García, M.J.1    Lucena, C.2    Romera, F.J.3    Alcántara, E.4    Pérez-Vicente, R.5
  • 11
    • 84857702759 scopus 로고    scopus 로고
    • Localized iron supply triggers lateral root elongation in Arabidopsis by altering the AUX1-mediated auxin distribution
    • Giehl RF, Lima JE, von Wirén N. 2012. Localized iron supply triggers lateral root elongation in Arabidopsis by altering the AUX1-mediated auxin distribution. Plant Cell 24: 33-49.
    • (2012) Plant Cell , vol.24 , pp. 33-49
    • Giehl, R.F.1    Lima, J.E.2    von Wirén, N.3
  • 12
    • 36348929536 scopus 로고    scopus 로고
    • Nitric oxide accumulation is required for molecular and physiological responses to iron deficiency in tomato roots
    • Graziano M, Lamattina L. 2007. Nitric oxide accumulation is required for molecular and physiological responses to iron deficiency in tomato roots. Plant Journal 52: 949-960.
    • (2007) Plant Journal , vol.52 , pp. 949-960
    • Graziano, M.1    Lamattina, L.2
  • 20
    • 77349084674 scopus 로고    scopus 로고
    • Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses
    • Jain M, Ghanashyam C, Bhattacharjee A. 2010. Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses. BMC Genomics 11: 73.
    • (2010) BMC Genomics , vol.11 , pp. 73
    • Jain, M.1    Ghanashyam, C.2    Bhattacharjee, A.3
  • 22
    • 79960509807 scopus 로고    scopus 로고
    • NO synthase-generated NO acts downstream of auxin in regulating Fe-deficiency-induced root branching that enhances Fe-deficiency tolerance in tomato plants
    • Jin CW, Du ST, Shamsi IH, Luo BF, Lin XY. 2011. NO synthase-generated NO acts downstream of auxin in regulating Fe-deficiency-induced root branching that enhances Fe-deficiency tolerance in tomato plants. Journal of Experimental Botany 62: 3875-3884.
    • (2011) Journal of Experimental Botany , vol.62 , pp. 3875-3884
    • Jin, C.W.1    Du, S.T.2    Shamsi, I.H.3    Luo, B.F.4    Lin, X.Y.5
  • 24
    • 84887303206 scopus 로고    scopus 로고
    • Development of a novel prediction method of cis-elements to hypothesize collaborative functions of cis-element pairs in iron-deficient rice
    • in press.
    • Kakei Y, Kobayashi T, Ogo Y, Itai RN, Takahashi M, Nakanishi H, Mori S, Nishizawa NK. 2013. Development of a novel prediction method of cis-elements to hypothesize collaborative functions of cis-element pairs in iron-deficient rice. Rice, in press.
    • (2013) Rice
    • Kakei, Y.1    Kobayashi, T.2    Ogo, Y.3    Itai, R.N.4    Takahashi, M.5    Nakanishi, H.6    Mori, S.7    Nishizawa, N.K.8
  • 25
    • 70450235175 scopus 로고    scopus 로고
    • A highly sensitive, quick and simple quantification method for nicotianamine and 2'-deoxymugineic acid from minimum samples using LC/ESI-TOF-MS achieves functional analysis of these components in plants
    • Kakei Y, Yamaguchi I, Kobayashi T, Takahashi M, Nakanishi H, Yamakawa T, Nishizawa NK. 2009b. A highly sensitive, quick and simple quantification method for nicotianamine and 2'-deoxymugineic acid from minimum samples using LC/ESI-TOF-MS achieves functional analysis of these components in plants. Plant Cell Physiology 50: 1988-1993.
    • (2009) Plant Cell Physiology , vol.50 , pp. 1988-1993
    • Kakei, Y.1    Yamaguchi, I.2    Kobayashi, T.3    Takahashi, M.4    Nakanishi, H.5    Yamakawa, T.6    Nishizawa, N.K.7
  • 28
    • 71649115722 scopus 로고    scopus 로고
    • The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes
    • Kobayashi T, Itai RN, Ogo Y, Kakei Y, Nakanishi H, Takahashi M, Nishizawa NK. 2009. The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes. Plant Journal 60: 948-961.
    • (2009) Plant Journal , vol.60 , pp. 948-961
    • Kobayashi, T.1    Itai, R.N.2    Ogo, Y.3    Kakei, Y.4    Nakanishi, H.5    Takahashi, M.6    Nishizawa, N.K.7
  • 29
    • 0035040041 scopus 로고    scopus 로고
    • In vivo evidence that Ids3 from Hordeum vulgare encodes a dioxygenase that converts 2'-deoxymugineic acid to mugineic acid in transgenic rice
    • Kobayashi T, Nakanishi H, Takahashi M, Kawasaki S, Nishizawa NK, Mori S. 2001. In vivo evidence that Ids3 from Hordeum vulgare encodes a dioxygenase that converts 2'-deoxymugineic acid to mugineic acid in transgenic rice. Planta 212: 864-871.
    • (2001) Planta , vol.212 , pp. 864-871
    • Kobayashi, T.1    Nakanishi, H.2    Takahashi, M.3    Kawasaki, S.4    Nishizawa, N.K.5    Mori, S.6
  • 31
    • 18444362441 scopus 로고    scopus 로고
    • Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements
    • Kobayashi T, Suzuki M, Inoue H, Itai RN, Takahashi M, Nakanishi H, Mori S, Nishizawa NK. 2005. Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements. Journal of Experimental Botany 56: 1305-1316.
    • (2005) Journal of Experimental Botany , vol.56 , pp. 1305-1316
    • Kobayashi, T.1    Suzuki, M.2    Inoue, H.3    Itai, R.N.4    Takahashi, M.5    Nakanishi, H.6    Mori, S.7    Nishizawa, N.K.8
  • 32
    • 3843129548 scopus 로고    scopus 로고
    • OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem
    • Koike S, Inoue H, Mizuno D, Takahashi M, Nakanishi H, Mori S, Nishizawa NK. 2004. OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem. Plant Journal 39: 415-424.
    • (2004) Plant Journal , vol.39 , pp. 415-424
    • Koike, S.1    Inoue, H.2    Mizuno, D.3    Takahashi, M.4    Nakanishi, H.5    Mori, S.6    Nishizawa, N.K.7
  • 33
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • Langfelder P, Horvath S. 2008. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 9: 559.
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 36
    • 0001730806 scopus 로고
    • Localization of phytosiderophore release and of iron uptake along intact barley roots
    • Marschner H, Romheld V, Kissel M. 1987. Localization of phytosiderophore release and of iron uptake along intact barley roots. Physiologia Plantarum 71: 157-162.
    • (1987) Physiologia Plantarum , vol.71 , pp. 157-162
    • Marschner, H.1    Romheld, V.2    Kissel, M.3
  • 39
    • 0000360798 scopus 로고
    • Characterization of mugineic-acid-Fe transporter in Fe-deficient barley roots using the multi-compartment transport box method
    • Mihashi S, Mori S. 1989. Characterization of mugineic-acid-Fe transporter in Fe-deficient barley roots using the multi-compartment transport box method. Biology of Metals 2: 146-154.
    • (1989) Biology of Metals , vol.2 , pp. 146-154
    • Mihashi, S.1    Mori, S.2
  • 42
    • 0001457395 scopus 로고
    • Methionine as a dominant precursor of phytosiderophores in Graminaceae Plants
    • Mori S, Nishizawa N. 1987. Methionine as a dominant precursor of phytosiderophores in Graminaceae Plants. Plant Cell Physiology 28: 1081-1092.
    • (1987) Plant Cell Physiology , vol.28 , pp. 1081-1092
    • Mori, S.1    Nishizawa, N.2
  • 46
    • 71249099082 scopus 로고    scopus 로고
    • Time course analysis of gene regulation under cadmiumstress in rice
    • Ogawa I, Nakanishi H, Mori S, Nishizawa N. 2009. Time course analysis of gene regulation under cadmiumstress in rice. Plant and Soil 325: 97-108.
    • (2009) Plant and Soil , vol.325 , pp. 97-108
    • Ogawa, I.1    Nakanishi, H.2    Mori, S.3    Nishizawa, N.4
  • 48
    • 34547098821 scopus 로고    scopus 로고
    • The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions
    • Ogo Y, Itai RN, Nakanishi H, Kobayashi T, Takahashi M, Mori S, Nishizawa NK. 2007. The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. Plant Journal 51: 366-377.
    • (2007) Plant Journal , vol.51 , pp. 366-377
    • Ogo, Y.1    Itai, R.N.2    Nakanishi, H.3    Kobayashi, T.4    Takahashi, M.5    Mori, S.6    Nishizawa, N.K.7
  • 49
    • 45149112228 scopus 로고    scopus 로고
    • A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants
    • Ogo Y, Kobayashi T, Itai RN, Nakanishi H, Kakei Y, Takahashi M, Toki S, Mori S, Nishizawa NK. 2008. A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants. Journal of Biological Chemistry 283: 13407-13417.
    • (2008) Journal of Biological Chemistry , vol.283 , pp. 13407-13417
    • Ogo, Y.1    Kobayashi, T.2    Itai, R.N.3    Nakanishi, H.4    Kakei, Y.5    Takahashi, M.6    Toki, S.7    Mori, S.8    Nishizawa, N.K.9
  • 50
    • 0141452054 scopus 로고    scopus 로고
    • Differential metal selectivity and gene expression of two zinc transporters from rice
    • Ramesh SA, Shin R, Eide DJ, Schachtman DP. 2003. Differential metal selectivity and gene expression of two zinc transporters from rice. Plant Physiology 133: 126-134.
    • (2003) Plant Physiology , vol.133 , pp. 126-134
    • Ramesh, S.A.1    Shin, R.2    Eide, D.J.3    Schachtman, D.P.4
  • 53
    • 82755176156 scopus 로고    scopus 로고
    • OsYSL6 is involved in the detoxification of excess manganese in rice
    • Sasaki A, Yamaji N, Xia J, Ma JF. 2011. OsYSL6 is involved in the detoxification of excess manganese in rice. Plant Physiology 157: 1832-1840.
    • (2011) Plant Physiology , vol.157 , pp. 1832-1840
    • Sasaki, A.1    Yamaji, N.2    Xia, J.3    Ma, J.F.4
  • 54
    • 84863093917 scopus 로고    scopus 로고
    • Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice
    • Sasaki A, Yamaji N, Yokosho K, Ma JF. 2012. Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice. Plant Cell 24: 2155-2167.
    • (2012) Plant Cell , vol.24 , pp. 2155-2167
    • Sasaki, A.1    Yamaji, N.2    Yokosho, K.3    Ma, J.F.4
  • 57
    • 0036001088 scopus 로고    scopus 로고
    • Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization
    • Schützendübel A, Polle A. 2002. Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization. Journal of Experimental Botany 53: 1351-1365.
    • (2002) Journal of Experimental Botany , vol.53 , pp. 1351-1365
    • Schützendübel, A.1    Polle, A.2
  • 58
    • 55249096281 scopus 로고    scopus 로고
    • Cytokinins negatively regulate the root iron uptake machinery in Arabidopsis through a growth-dependent pathway
    • Séguéla M, Briat JF, Vert G, Curie C. 2008. Cytokinins negatively regulate the root iron uptake machinery in Arabidopsis through a growth-dependent pathway. Plant Journal 55: 289-300.
    • (2008) Plant Journal , vol.55 , pp. 289-300
    • Séguéla, M.1    Briat, J.F.2    Vert, G.3    Curie, C.4
  • 59
    • 77954364444 scopus 로고    scopus 로고
    • Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress
    • Shen C, Bai Y, Wang S, Zhang S, Wu Y, Chen M, Jiang D, Qi Y. 2010. Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress. FEBS Journal 277: 2954-2969.
    • (2010) FEBS Journal , vol.277 , pp. 2954-2969
    • Shen, C.1    Bai, Y.2    Wang, S.3    Zhang, S.4    Wu, Y.5    Chen, M.6    Jiang, D.7    Qi, Y.8
  • 60
    • 0000623913 scopus 로고
    • Biosynthesis of phytosiderophores: in vitro Biosynthesis of 2'-deoxymugineic acid from l-methionine and nicotianamine
    • Shojima S, Nishizawa NK, Fushiya S, Nozoe S, Irifune T, Mori S. 1990. Biosynthesis of phytosiderophores: in vitro Biosynthesis of 2'-deoxymugineic acid from l-methionine and nicotianamine. Plant Physiology 93: 1497-1503.
    • (1990) Plant Physiology , vol.93 , pp. 1497-1503
    • Shojima, S.1    Nishizawa, N.K.2    Fushiya, S.3    Nozoe, S.4    Irifune, T.5    Mori, S.6
  • 61
    • 84989725909 scopus 로고
    • Inhibition of electron flow around photosystem I in chloroplasts of Cd-treated maize plants is due to Cd-induced iron deficiency
    • Siedlecka A, BaszyńAski T. 1993. Inhibition of electron flow around photosystem I in chloroplasts of Cd-treated maize plants is due to Cd-induced iron deficiency. Physiologia Plantarum 87: 199-202.
    • (1993) Physiologia Plantarum , vol.87 , pp. 199-202
    • Siedlecka, A.1    BaszyńAski, T.2
  • 63
    • 84983444492 scopus 로고
    • Nicotianamine: mediator of transport of iron and heavy metals in the phloem?
    • Stephan UW, Scholz G. 1993. Nicotianamine: mediator of transport of iron and heavy metals in the phloem? Physiologia Plantarum 88: 522-529.
    • (1993) Physiologia Plantarum , vol.88 , pp. 522-529
    • Stephan, U.W.1    Scholz, G.2
  • 64
    • 0028798434 scopus 로고
    • Oxidative mechanisms in the toxicity of metal ions
    • Stohs SJ, Bagchi D. 1995. Oxidative mechanisms in the toxicity of metal ions. Free Radical Biology & Medicine 18: 321-336.
    • (1995) Free Radical Biology & Medicine , vol.18 , pp. 321-336
    • Stohs, S.J.1    Bagchi, D.2
  • 66
    • 84950452568 scopus 로고
    • Naturally occuring iron-chelating compounds in oat- and rice-root washing I Activity measurement and preliminary characterization
    • Takagi S. 1976. Naturally occuring iron-chelating compounds in oat- and rice-root washing I Activity measurement and preliminary characterization. Soil Science and Plant Nutrition 22: 423-433.
    • (1976) Soil Science and Plant Nutrition , vol.22 , pp. 423-433
    • Takagi, S.1
  • 72
    • 58449112820 scopus 로고    scopus 로고
    • 52Fe translocation in barley as monitored by a positron-emitting tracer imaging system (PETIS): evidence for the direct translocation of Fe from roots to young leaves via phloem
    • 52Fe translocation in barley as monitored by a positron-emitting tracer imaging system (PETIS): evidence for the direct translocation of Fe from roots to young leaves via phloem. Plant Cell Physiology 50: 48-57.
    • (2009) Plant Cell Physiology , vol.50 , pp. 48-57
    • Tsukamoto, T.1    Nakanishi, H.2    Uchida, H.3    Watanabe, S.4    Matsuhashi, S.5    Mori, S.6    Nishizawa, N.K.7
  • 75
    • 78650643503 scopus 로고    scopus 로고
    • Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa
    • Wu J, Wang C, Zheng L, Wang L, Chen Y, Whela J, Shou H. 2011. Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 62: 667-674.
    • (2011) Journal of Experimental Botany , vol.62 , pp. 667-674
    • Wu, J.1    Wang, C.2    Zheng, L.3    Wang, L.4    Chen, Y.5    Whela, J.6    Shou, H.7
  • 76
    • 84862929601 scopus 로고    scopus 로고
    • Induction of root Fe(lll) reductase activity and proton extrusion by iron deficiency is mediated by auxin-based systemic signalling in Malus xiaojinensis
    • Wu T, Zhang HT, Wang Y, Jia WS, Xu XF, Zhang XZ, Han ZH. 2012. Induction of root Fe(lll) reductase activity and proton extrusion by iron deficiency is mediated by auxin-based systemic signalling in Malus xiaojinensis. Journal of Experimental Botany 63: 859-870.
    • (2012) Journal of Experimental Botany , vol.63 , pp. 859-870
    • Wu, T.1    Zhang, H.T.2    Wang, Y.3    Jia, W.S.4    Xu, X.F.5    Zhang, X.Z.6    Han, Z.H.7
  • 77
    • 58449118383 scopus 로고    scopus 로고
    • OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice
    • Yokosho K, Yamaji N, Ueno D, Mitani N, Ma JF. 2009. OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice. Plant Physiology 149: 297-305.
    • (2009) Plant Physiology , vol.149 , pp. 297-305
    • Yokosho, K.1    Yamaji, N.2    Ueno, D.3    Mitani, N.4    Ma, J.F.5
  • 79
    • 77952416763 scopus 로고    scopus 로고
    • Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.)
    • Zhao X, Huang J, Yu H, Wang L, Xie W. 2010. Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.). BMC Plant Biology 10: 92.
    • (2010) BMC Plant Biology , vol.10 , pp. 92
    • Zhao, X.1    Huang, J.2    Yu, H.3    Wang, L.4    Xie, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.