Modeling deamidation in sheep α-keratin peptides and application to archeological wool textiles

Analytical Chemistry

Volumn 86, Issue 1, 2014, Pages 567-575

  Solazzo, Caroline ^a,b,h   Wilson, Julie ^a   Dyer, Jolon M ^b,c,d   Clerens, Stefan ^b   Plowman, Jeffrey E ^b   Von Holstein, Isabella ^a   Walton Rogers, Penelope ^e   Peacock, Elizabeth E ^f,g   Collins, Matthew J ^a  

^a UNIVERSITY OF YORK   (United Kingdom)

^b AGRESEARCH LTD   (New Zealand)

^c UNIVERSITY OF CANTERBURY   (New Zealand)

^d MASSEY UNIVERSITY   (New Zealand)

^e Anglo Saxon Laboratory   (United Kingdom)

^f NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^g UNIVERSITY OF GOTHENBURG   (Sweden)

^h MUSEUM CONSERVATION INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANCIENT PROTEINS; HIGHER-ORDER STRUCTURE; LOCAL ENVIRONMENTS; MATRIX-ASSISTED LASER DESORPTION/IONIZATION-TIME-OF-FLIGHT MASS SPECTROMETRY; NANO-LC-ESI-MS/MS; NEGATIVE CORRELATION; STERIC HINDRANCES; TANDEM MASS SPECTROMETRY;

AMINO ACIDS; ELECTROSPRAY IONIZATION; KERATIN; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PEPTIDES; TEXTILES; WOOL; YARN;

CHEMICAL REACTIONS;

AMIDE; KERATIN; PEPTIDE FRAGMENT;

AGED; AMINO ACID SEQUENCE; ANIMAL; ARTICLE; GENETICS; HISTORY; HUMAN; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR GENETICS; SHEEP; TEXTILE;

AGED; AMIDES; AMINO ACID SEQUENCE; ANIMALS; HISTORY, MEDIEVAL; HUMANS; KERATINS; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; SHEEP; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TEXTILES;

EID: 84891816355     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac4026362     Document Type: Article

References (47)

1. Power, E. The Wool Trade In English Medieval History; Oxford University Press: Oxford, U.K., 1941; pp 1-68.
2. Ryder, M. L. Agricultural History Review 1964, 12 (1) 1-12
3. Ryder, M. L. Genet., Sel., Evol. 1981, 13 (4) 381-418
4. Solazzo, C.; Dyer, J. M.; Clerens, S.; Plowman, J. E.; Peacock, E. E.; Collins, M. J. Int. Biodeterior. Biodegrad. 2013, 80, 48-59
5. Araki, N.; Moini, M. Rapid Commun. Mass Spectrom. 2011, 25 (22) 3396-3400
6. Buckley, M.; Walker, A.; Ho, S. Y. W.; Yang, Y.; Smith, C.; Ashton, P.; Oates, J. T.; Cappellini, E.; Koon, H.; Penkman, K.; Elsworth, B.; Ashford, D.; Solazzo, C.; Andrews, P.; Strahler, J.; Shapiro, B.; Ostrom, P.; Gandhi, H.; Miller, W.; Raney, B.; Zylber, M. I.; Gilbert, M. T. P.; Prigodich, R. V.; Ryan, M.; Rijsdijk, K. F.; Janoo, A.; Collins, M. J. Science 2008, 319 (5859) 33
7. Leo, G.; Bonaduce, I.; Andreotti, A.; Marino, G.; Pucci, P.; Colombini, M. P.; Birolo, L. Anal. Chem. 2011, 83 (6) 2056-2064
8. van Doorn, N. L.; Wilson, J.; Hollund, H.; Soressi, M.; Collins, M. J. Rapid Commun. Mass Spectrom. 2012, 26 (19) 2319-2327
9. Perez Hurtado, P.; O'Connor, P. B. Anal. Chem. 2012, 84 (6) 3017-3025
10. Wilson, J.; van Doorn, N. L.; Collins, M. J. Anal. Chem. 2012, 84 (21) 9041-9048
11. McKerrow, J. H.; Robinson, A. B. Science 1974, 183 (4120) 85
12. Robinson, A. B. Proc. Natl. Acad. Sci. U.S.A. 1974, 71 (3) 885-888
13. Robinson, A. B.; McKerrow, J. H.; Cary, P. Proc. Natl. Acad. Sci. U.S.A. 1970, 66 (3) 753-757
14. Robinson, N. E.; Robinson, A. B. Proc. Natl. Acad. Sci. U.S.A. 2001, 98 (3) 944-949
15. Robinson, N. E.; Robinson, A. B. Molecular Clocks: Deamidation of Asparaginyl and Glutaminyl Residues in Peptides and Proteins; Althouse Press: Cave Junction, OR, 2004.
16. Truscott, R. J. W. Rejuvenation Res. 2010, 13 (1) 83-89
17. Robinson, N. E.; Robinson, A. B. Pept. Sci. 2008, 90 (3) 297-306
18. Hains, P. G.; Truscott, R. J. W. Invest. Ophthalmol. Visual Sci. 2010, 51 (6) 3107-3114
19. Truscott, R. J. W.; Zhu, X. Prog. Retinal Eye Res. 2010, 29 (6) 487-499
20. Orlando, L.; Ginolhac, A.; Zhang, G.; Froese, D.; Albrechtsen, A.; Stiller, M.; Schubert, M.; Cappellini, E.; Petersen, B.; Moltke, I.; Johnson, P. L. F.; Fumagalli, M.; Vilstrup, J. T.; Raghavan, M.; Korneliussen, T.; Malaspinas, A.-S.; Vogt, J.; Szklarczyk, D.; Kelstrup, C. D.; Vinther, J.; Dolocan, A.; Stenderup, J.; Velazquez, A. M. V.; Cahill, J.; Rasmussen, M.; Wang, X.; Min, J.; Zazula, G. D.; Seguin-Orlando, A.; Mortensen, C.; Magnussen, K.; Thompson, J. F.; Weinstock, J.; Gregersen, K.; Roed, K. H.; Eisenmann, V.; Rubin, C. J.; Miller, D. C.; Antczak, D. F.; Bertelsen, M. F.; Brunak, S.; Al-Rasheid, K. A. S.; Ryder, O.; Andersson, L.; Mundy, J.; Krogh, A.; Gilbert, M. T. P.; Kjaer, K.; Sicheritz-Ponten, T.; Jensen, L. J.; Olsen, J. V.; Hofreiter, M.; Nielsen, R.; Shapiro, B.; Wang, J.; Willerslev, E. Nature 2013, 499, 74-78
21. Smith, C. I.; Chamberlain, A. T.; Riley, M. S.; Stringer, C.; Collins, M. J. J. Hum. Evol. 2003, 45 (3) 203-217
22. Brown, J. P.; Rose, W. B. APT Bull. 1996, 27 (3) 12-23
23. Martens, M. H. J. Climate Risk Assessment in Museums. Ph.D. Thesis, Technische Universiteit, Eindhoven, The Netherlands, 2012.
24. Scotchler, J. W.; Robinson, A. B. Anal. Chem. 1974, 59 (1) 319-322
25. Lindner, H.; Helliger, W. Exp. Gerontol. 2001, 36 (9) 1551-1563
26. Solazzo, C.; Wadsley, M.; Dyer, J. M.; Clerens, S.; Collins, M. J.; Plowman, J. Rapid Commun. Mass Spectrom. 2013, 27, 2685-2698
27. Fraser, R. D.; MacRae, T. P.; Parry, D. A.; Suzuki, E. Proc. Natl. Acad. Sci. U.S.A. 1986, 83 (5) 1179-1183
28. Robinson, N. E.; Robinson, A. B. Proc. Natl. Acad. Sci. U.S.A. 2001, 98 (8) 4367-4372
29. Robinson, N. E.; Robinson, A. B. J. Pept. Res. 2004, 63 (5) 437-448
30. Robinson, N. E.; Robinson, A. B.; Merrifield, R. B. J. Pept. Res. 2001, 57 (6) 483-493
31. Robinson, N. E.; Robinson, Z. W.; Robinson, B. R.; Robinson, A. L.; Robinson, J. A.; Robinson, M. L.; Robinson, A. B. J. Pept. Res. 2004, 63 (5) 426-436
32. Geiger, T.; Clarke, S. J. Biol. Chem. 1987, 262 (2) 785-794
33. Robinson, A. B.; Robinson, L. R. Proc. Natl. Acad. Sci. U.S.A. 1991, 88 (20) 8880-8884
34. von Holstein, I. A Light Stable Isotope (C, N, H O) Approach to Identifying Movement of Medieval Textiles in North West Europe. Ph.D. Thesis, University of York, York, U.K., 2012.
35. Walton, P. Textiles, Cordage and Raw Fibre from 16-22 Coppergate. The Archaeology of York; Council for British Archaeology and York Archaeological Trust: London, 1989; Vol. AY17/5.
36. Hedges, J.; Ryder, M. L.; Walton, P.; Muthesius, A. In Anglo-Scandinavian Finds from Lloyds Bank, Pavement, and Other Sites; MacGregor, A., Ed.; York Archaeological Trust by the Council for British Archaeology: London, 1982; Vol. 17, pp 102-136.
37. Walton Rogers, P. In The Origins of the Newcastle Quayside: Excavations at Queen Street and Dog Bank; O'Brien, C.; Bown, L.; Dixon, S.; Nicholson, R., Eds.; Society of Antiquaries of Newcastle upon Tyne: Newcastle upon Tyne, U.K., 1988; Vol. Monograph Series 3, pp 78-92.
38. Sveinbjarnardóttir, G.; Erlendsson, E.; Vickers, K.; McGovern, T.; Milek, K.; Edwards, K.; Simpson, I.; Cook, G. Environ. Archaeol. 2007, 12 (2) 187-206
39. Walton Rogers, P. In Archaeological Investigations at a High Status Farm in Western Iceland; Sveinbjarnardóttir, G., Ed.; Thjódminjasafn Íslands/Snorrastofa: Reykjavík, Iceland, 2012; pp 197-217.
40. Li, X.; Cournoyer, J. J.; Lin, C.; O'Connor, P. B. J. Am. Soc. Mass Spectrom. 2008, 19 (6) 855-864
41. Savitski, M. M.; Lemeer, S.; Boesche, M.; Lang, M.; Mathieson, T.; Bantscheff, M.; Kuster, B. Mol. Cell. Proteomics 2011, 10, 2
42. Kosky, A. A.; Razzaq, U. O.; Treuheit, M. J.; Brems, D. N. Protein Sci. 1999, 8 (11) 2519-2523
43. Smith, T. A.; Parry, D. A. D. J. Struct. Biol. 2007, 158 (3) 344-357
44. Catak, S.; Monard, G.; Aviyente, V.; Ruiz-López, M. F. J. Phys. Chem. A 2009, 113 (6) 1111-1120
45. Holden, J.; West, L. J.; Howard, A. J.; Maxfield, E.; Panter, I.; Oxley, J. Earth-Sci. Rev. 2006, 78 (1-2) 59-83
46. Mainman, A. J.; Rogers, N. S. H. In The Archaeology of York. The Small Finds; Addyman, P. V., Ed.; Council for British Archaeology: York, U.K., 2000; Vol. 17, pp 2451-2672.
47. Kirby, D. P.; Buckley, M.; Promise, E.; Trauger, S. A.; Holdcraft, T. R. Analyst 2013, 138 (7) 4849-4858