Real-time visualization of 3-D dynamic microscopic objects using optical diffraction tomography

Optics Express

Volumn 21, Issue 26, 2013, Pages 32269-32278

  Kim, Kyoohyun ^a   Kim, Kyung Sang ^a   Park, HyunJoo ^a   Ye, Jong Chul ^a   Park, Yong Keun ^a  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; DIFFRACTION; DIMERS; OPTICAL SYSTEMS; REFRACTIVE INDEX; SHEAR FLOW;

CONVENTIONAL APPROACH; GRAPHIC PROCESSING UNIT(GPU); MICROSCOPIC OBJECTS; OPTICAL DIFFRACTION TOMOGRAPHY; REAL TIME VISUALIZATION; REAL-TIME RECONSTRUCTION; STRUCTURAL INFORMATION; TOMOGRAPHIC RECONSTRUCTION;

THREE DIMENSIONAL COMPUTER GRAPHICS;

ALGORITHM; ARTICLE; CELL CULTURE; CELL TRACKING; COMPUTER SYSTEM; CYTOLOGY; EQUIPMENT; EQUIPMENT DESIGN; EQUIPMENT FAILURE; ERYTHROCYTE; HUMAN; IMAGE ENHANCEMENT; METHODOLOGY; OPTICAL TOMOGRAPHY; REFRACTOMETRY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; THREE DIMENSIONAL IMAGING;

ALGORITHMS; CELL TRACKING; CELLS, CULTURED; COMPUTER SYSTEMS; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; ERYTHROCYTES; HUMANS; IMAGE ENHANCEMENT; IMAGING, THREE-DIMENSIONAL; REFRACTOMETRY; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; TOMOGRAPHY, OPTICAL;

EID: 84891791136     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.21.032269     Document Type: Article

References (58)

1. D. J. Stephens and V. J. Allan, "Light microscopy techniques for live cell imaging," Science 300(5616), 82-86 (2003).
2. J. A. Conchello and J. W. Lichtman, "Optical sectioning microscopy," Nat. Methods 2(12), 920-931 (2005).
3. S. W. Hell, "Far-field optical nanoscopy," in Single Molecule Spectroscopy in Chemistry, Physics and Biology(2010), pp. 365-398.
4. G. Popescu, Quantitative Phase Imaging of Cells and Tissues (McGraw-Hill Professional, 2011).
5. K. Lee, K. Kim, J. Jung, J. H. Heo, S. Cho, S. Lee, G. Chang, Y. J. Jo, H. Park, and Y. K. Park, "Quantitative phase imaging techniques for the study of cell pathophysiology: From principles to applications," Sensors (Basel) 13(4), 4170-4191 (2013).
6. A. C. Kak and M. Slaney, Principles of Computerized Tomographic Imaging (Siam, 1988).
7. V. Lauer, "New approach to optical diffraction tomography yielding a vector equation of diffraction tomography and a novel tomographic microscope," J. Microsc. 205(2), 165-176 (2002).
8. F. Charrière, A. Marian, F. Montfort, J. Kuehn, T. Colomb, E. Cuche, P. Marquet, and C. Depeursinge, "Cell refractive index tomography by digital holographic microscopy," Opt. Lett. 31(2), 178-180 (2006).
9. W. Choi, C. Fang-Yen, K. Badizadegan, S. Oh, N. Lue, R. R. Dasari, and M. S. Feld, "Tomographic phase microscopy," Nat. Methods 4(9), 717-719 (2007).
10. I. Bergoënd, C. Arfire, N. Pavillon, and C. Depeursinge, "Diffraction tomography for biological cells imaging using digital holographic microscopy," in Laser Applications in Life Sciences 2010(International Society for Optics and Photonics, 2010), pp. 737613-737613-737618.
11. K. G. Phillips, S. L. Jacques, and O. J. T. McCarty, "Measurement of Single Cell Refractive Index, Dry Mass, Volume, and Density Using a Transillumination Microscope," Phys. Rev. Lett. 109(11), 118105 (2012).
12. Y. K. Park, M. Diez-Silva, G. Popescu, G. Lykotrafitis, W. S. Choi, M. S. Feld, and S. Suresh, "Refractive index maps and membrane dynamics of human red blood cells parasitized by Plasmodium falciparum," Proc. Natl. Acad. Sci. U.S.A. 105(37), 13730-13735 (2008).
13. K. Kim, H. Yoon, M. Diez-Silva, M. Dao, R. R. Dasari, and Y. Park, "High-resolution three-dimensional imaging of red blood cells parasitized by Plasmodium falciparum and in situ hemozoin crystals using optical diffraction tomography," J. Biomed. Opt. 19(1), 011005 (2014).
14. M. Diez-Silva, Y. Park, S. Huang, O. Mercereau-Puijalon, G. Deplaine, C. Lavazec, S. Perrot, S. Bonnefoy, M. Dao, M. S. Feld, J. Han, and S. Suresh, "Pf155/RESA protein influences the dynamic microcirculatory behavior of ring-stage Plasmodium falciparum infected red blood cells," Sci Rep (2012).
15. R. Chandramohanadas, Y. Park, L. Lui, A. Li, D. Quinn, K. Liew, M. Diez-Silva, Y. Sung, M. Dao, C. T. Lim, P. R. Preiser, and S. Suresh, "Biophysics of malarial parasite exit from infected erythrocytes," PLoS ONE 6(6), e20869 (2011).
16. C. Fang-Yen, W. Choi, Y. J. Sung, C. J. Holbrow, R. R. Dasari, and M. S. Feld, "Video-rate tomographic phase microscopy," J. Biomed. Opt. 16(1), 011005 (2011).
17. Y. Sung, W. Choi, N. Lue, R. R. Dasari, and Z. Yaqoob, "Stain-Free Quantification of Chromosomes in Live Cells Using Regularized Tomographic Phase Microscopy," PLoS ONE 7(11), e49502 (2012).
18. S. J. LaRoque, E. Y. Sidky, and X. Pan, "Accurate image reconstruction from few-view and limited-Angle data in diffraction tomography," J. Opt. Soc. Am. A 25(7), 1772-1782 (2008).
19. H. Pham, H. F. Ding, N. Sobh, M. Do, S. Patel, and G. Popescu, "Off-Axis quantitative phase imaging processing using CUDA: Toward real-time applications," Biomed. Opt. Express 2(7), 1781-1793 (2011).
20. J. Bailleul, B. Simon, M. Debailleul, H. Liu, and O. Haeberlé, "GPU acceleration towards real-time image reconstruction in 3D tomographic diffractive microscopy," in Proc. of SPIE Vol(2012), pp. 843707-843701.
21. G. Ortega, J. Lobera, M. Arroyo, I. García, and E. M. Garzon, "High Performance Computing for Optical Diffraction Tomography," in High Performance Computing and Simulation (HPCS), 2012 International Conference on(IEEE, 2012), pp. 195-201.
22. E. Cuche, P. Marquet, and C. Depeursinge, "Spatial filtering for zero-order and twin-image elimination in digital off-Axis holography," Appl. Opt. 39(23), 4070-4075 (2000).
23. E. Wolf, "Three-dimensional structure determination of semi-transparent objects from holographic data," Opt. Commun. 1(153), 4 (1969).
24. Y. J. Sung, W. Choi, C. Fang-Yen, K. Badizadegan, R. R. Dasari, and M. S. Feld, "Optical diffraction tomography for high resolution live cell imaging," Opt. Express 17(1), 266-277 (2009).
25. A. M. Bruckstein, M. Elad, and M. Zibulevsky, "On the Uniqueness of Nonnegative Sparse Solutions to Underdetermined Systems of Equations," IEEE Trans. Inf. Theory 54(11), 4813-4820 (2008).
26. S. K. Debnath and Y. Park, "Real-time quantitative phase imaging with a spatial phase-shifting algorithm," Opt. Lett. 36(23), 4677-4679 (2011).
27. B. Bhaduri and G. Popescu, "Derivative method for phase retrieval in off-Axis quantitative phase imaging," Opt. Lett. 37(11), 1868-1870 (2012).
28. O. Zhernovaya, O. Sydoruk, V. Tuchin, and A. Douplik, "The refractive index of human hemoglobin in the visible range," Phys. Med. Biol. 56(13), 4013-4021 (2011).
29. Y. Han, A. M. Alsayed, M. Nobili, J. Zhang, T. C. Lubensky, and A. G. Yodh, "Brownian motion of an ellipsoid," Science 314(5799), 626-630 (2006).
30. J. Fung, K. E. Martin, R. W. Perry, D. M. Kaz, R. McGorty, and V. N. Manoharan, "Measuring translational, rotational, and vibrational dynamics in colloids with digital holographic microscopy," Opt. Express 19(9), 8051- 8065 (2011).
31. J. Fung and V. N. Manoharan, "Holographic measurements of anisotropic three-dimensional diffusion of colloidal clusters," Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 88(2), 020302 (2013).
32. H. Yu, H. Park, Y. Kim, M. W. Kim, and Y. Park, "Fourier-transform light scattering of individual colloidal clusters," Opt. Lett. 37(13), 2577-2579 (2012).
33. K. V. Edmond, M. T. Elsesser, G. L. Hunter, D. J. Pine, and E. R. Weeks, "Decoupling of rotational and translational diffusion in supercooled colloidal fluids," Proc. Natl. Acad. Sci. U.S.A. 109(44), 17891-17896 (2012).
34. D. Mukhija and M. J. Solomon, "Translational and rotational dynamics of colloidal rods by direct visualization with confocal microscopy," J. Colloid Interface Sci. 314(1), 98-106 (2007).
35. N. Mohandas, R. M. Hochmuth, and E. E. Spaeth, "Adhesion of red cells to foreign surfaces in the presence of flow," J. Biomed. Mater. Res. 8(2), 119-136 (1974).
36. B. Kaoui, N. Tahiri, T. Biben, H. Ez-Zahraouy, A. Benyoussef, G. Biros, and C. Misbah, "Complexity of vesicle microcirculation," Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 84(4), 041906 (2011).
37. X. J. Li, P. M. Vlahovska, and G. E. Karniadakis, "Continuum- and particle-based modeling of shapes and dynamics of red blood cells in health and disease," Soft Matter 9(1), 28-37 (2012).
38. T. Wu, and J. J. Feng, "Simulation of malaria-infected red blood cells in microfluidic channels: Passage and blockage," Biomicrofluidics 7, 044115 (2013).
39. Y. K. Park, C. A. Best, K. Badizadegan, R. R. Dasari, M. S. Feld, T. Kuriabova, M. L. Henle, A. J. Levine, and G. Popescu, "Measurement of red blood cell mechanics during morphological changes," Proc. Natl. Acad. Sci. U.S.A. 107(15), 6731-6736 (2010).
40. Y. Park, C. A. Best, T. Auth, N. S. Gov, S. A. Safran, G. Popescu, S. Suresh, and M. S. Feld, "Metabolic remodeling of the human red blood cell membrane," Proc. Natl. Acad. Sci. U.S.A. 107(4), 1289-1294 (2010).
41. Y. Park, C. A. Best, T. Kuriabova, M. L. Henle, M. S. Feld, A. J. Levine, and G. Popescu, "Measurement of the nonlinear elasticity of red blood cell membranes," Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 83(5), 051925 (2011).
42. H. S. Byun, T. R. Hillman, J. M. Higgins, M. Diez-Silva, Z. Peng, M. Dao, R. R. Dasari, S. Suresh, and Y. K. Park, "Optical measurement of biomechanical properties of individual erythrocytes from a sickle cell patient," Acta Biomater. 8(11), 4130-4138 (2012).
43. G. Popescu, Y. Park, W. Choi, R. R. Dasari, M. S. Feld, and K. Badizadegan, "Imaging red blood cell dynamics by quantitative phase microscopy," Blood Cells Mol. Dis. 41(1), 10-16 (2008).
44. Y. Park, T. Yamauchi, W. Choi, R. Dasari, and M. S. Feld, "Spectroscopic phase microscopy for quantifying hemoglobin concentrations in intact red blood cells," Opt. Lett. 34(23), 3668-3670 (2009).
45. D. Fu, W. Choi, Y. J. Sung, Z. Yaqoob, R. R. Dasari, and M. Feld, "Quantitative dispersion microscopy," Biomed. Opt. Express 1(2), 347-353 (2010).
46. M. Rinehart, Y. Z. Zhu, and A. Wax, "Quantitative phase spectroscopy," Biomed. Opt. Express 3(5), 958-965 (2012).
47. Y. Jang, J. Jang, and Y. Park, "Dynamic spectroscopic phase microscopy for quantifying hemoglobin concentration and dynamic membrane fluctuation in red blood cells," Opt. Express 20(9), 9673-9681 (2012).
48. J. H. Jung, J. Jang, and Y. Park, "Spectro-refractometry of individual microscopic objects using swept-source quantitative phase imaging," Anal. Chem. 85(21), 10519-10525 (2013).
49. Z. Wang, L. Millet, M. Mir, H. F. Ding, S. Unarunotai, J. Rogers, M. U. Gillette, and G. Popescu, "Spatial light interference microscopy (SLIM)," Opt. Express 19(2), 1016-1026 (2011).
50. B. Bhaduri, H. Pham, M. Mir, and G. Popescu, "Diffraction phase microscopy with white light," Opt. Lett. 37(6), 1094-1096 (2012).
51. S. Oh, C. Fang-Yen, W. Choi, Z. Yaqoob, D. Fu, Y. K. Park, R. R. Dassari, and M. S. Feld, "Label-Free Imaging of Membrane Potential Using Membrane Electromotility," Biophys. J. 103(1), 11-18 (2012).
52. J. Garay, J. A. D'Angelo, Y. K. Park, C. M. Summa, M. L. Aiken, E. Morales, K. Badizadegan, E. Fiebiger, and B. L. Dickinson, "Crosstalk between PKA and Epac regulates the phenotypic maturation and function of human dendritic cells," J. Immunol. 185(6), 3227-3238 (2010).
53. G. Popescu, Y. Park, N. Lue, C. Best-Popescu, L. Deflores, R. R. Dasari, M. S. Feld, and K. Badizadegan, "Optical imaging of cell mass and growth dynamics," Am. J. Physiol. Cell Physiol. 295(2), C538-C544 (2008).
54. M. Mir, Z. Wang, Z. Shen, M. Bednarz, R. Bashir, I. Golding, S. G. Prasanth, and G. Popescu, "Optical measurement of cycle-dependent cell growth," Proc. Natl. Acad. Sci. U.S.A. 108(32), 13124-13129 (2011).
55. S. Cho, S. Kim, Y. Kim, and Y. K. Park, "Optical imaging techniques for the study of malaria," Trends Biotechnol. 30(2), 71-79 (2012).
56. S. A. Alexandrov, T. R. Hillman, T. Gutzler, and D. D. Sampson, "Synthetic aperture Fourier holographic optical microscopy," Phys. Rev. Lett. 97(16), 168102 (2006).
57. Y.-K. Park, W. Choi, Z. Yaqoob, R. Dasari, K. Badizadegan, and M. S. Feld, "Speckle-field digital holographic microscopy," Opt. Express 17(15), 12285-12292 (2009).
58. K. Lee, H.-D. Kim, K. Kim, Y. Kim, T. R. Hillman, B. Min, and Y. Park, "Synthetic Fourier transform light scattering," Opt. Express 21(19), 22453-22463 (2013).