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Volumn 15, Issue 2, 2014, Pages 133-144

Pseudogenization in pathogenic fungi with different host plants and lifestyles might reflect their evolutionary past

Author keywords

[No Author keywords available]

Indexed keywords

BOTRYOTINIA FUCKELIANA; CLADOSPORIUM; CLADOSPORIUM FULVUM; FUNGI; LYCOPERSICON ESCULENTUM; MYCOSPHAERELLA; MYCOSPHAERELLA FIJIENSIS; MYCOSPHAERELLA PINI; VERTICILLIUM DAHLIAE;

EID: 84891735700     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/mpp.12072     Document Type: Article
Times cited : (20)

References (38)
  • 3
    • 84891742193 scopus 로고    scopus 로고
    • (unpublished article) Automated alignment-based curation of gene models in filamentous fungi.
    • van der Burgt, A., Severing, S., Collemare, J. and De Wit, P.J. (unpublished article) Automated alignment-based curation of gene models in filamentous fungi.
    • van der Burgt, A.1    Severing, S.2    Collemare, J.3    De Wit, P.J.4
  • 5
    • 77956016484 scopus 로고    scopus 로고
    • The fungal genome initiative and lessons learned from genome sequencing
    • Cuomo, C.A. and Birren, B.W. (2010) The fungal genome initiative and lessons learned from genome sequencing. Methods Enzymol. 470, 833-855.
    • (2010) Methods Enzymol. , vol.470 , pp. 833-855
    • Cuomo, C.A.1    Birren, B.W.2
  • 6
    • 78951489390 scopus 로고    scopus 로고
    • Sexual reproduction and gene flow in the pine pathogen Dothistroma septosporum in British Columbia
    • Dale, A.L., Lewis, K.J. and Murray, B.W. (2011) Sexual reproduction and gene flow in the pine pathogen Dothistroma septosporum in British Columbia. Phytopathology, 101, 68-76.
    • (2011) Phytopathology , vol.101 , pp. 68-76
    • Dale, A.L.1    Lewis, K.J.2    Murray, B.W.3
  • 7
    • 0037351682 scopus 로고    scopus 로고
    • Schizosaccharomyces pombe essential genes: a pilot study
    • Decottignies, A., Sanchez-Perez, I. and Nurse, P. (2003) Schizosaccharomyces pombe essential genes: a pilot study. Genome Res. 13, 399-406.
    • (2003) Genome Res. , vol.13 , pp. 399-406
    • Decottignies, A.1    Sanchez-Perez, I.2    Nurse, P.3
  • 8
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • Emanuelsson, O., Brunak, S., von Heijne, G. and Nielsen, H. (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2, 953-971.
    • (2007) Nat. Protoc. , vol.2 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 9
    • 4143050271 scopus 로고    scopus 로고
    • RIP: the evolutionary cost of genome defense
    • Galagan, J.E. and Selker, E.U. (2004) RIP: the evolutionary cost of genome defense. Trends Genet. 20, 417-423.
    • (2004) Trends Genet. , vol.20 , pp. 417-423
    • Galagan, J.E.1    Selker, E.U.2
  • 15
    • 0036882394 scopus 로고    scopus 로고
    • Serine protease mechanism and specificity
    • Hedstrom, L. (2002) Serine protease mechanism and specificity. Chem. Rev. 102, 4501-4524.
    • (2002) Chem. Rev. , vol.102 , pp. 4501-4524
    • Hedstrom, L.1
  • 17
    • 84881145993 scopus 로고    scopus 로고
    • Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen
    • de Jonge, R., Bolton, M., Kombrink, A., van den Berg, G., Yadeta, K. and Thomma, B.P. (2013) Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. Genome Res. 23, 1271-1282.
    • (2013) Genome Res. , vol.23 , pp. 1271-1282
    • de Jonge, R.1    Bolton, M.2    Kombrink, A.3    van den Berg, G.4    Yadeta, K.5    Thomma, B.P.6
  • 20
    • 28844465123 scopus 로고    scopus 로고
    • Engineering a software tool for gene structure prediction in higher organisms
    • Kurtz, S., Gremme, G., Brendel, V. and Sparks, M.E. (2005) Engineering a software tool for gene structure prediction in higher organisms. Inform. Software Tech. 47, 965-978.
    • (2005) Inform. Software Tech. , vol.47 , pp. 965-978
    • Kurtz, S.1    Gremme, G.2    Brendel, V.3    Sparks, M.E.4
  • 21
    • 0036359420 scopus 로고    scopus 로고
    • Cladosporium fulvum overcomes Cf-2-mediated resistance by producing truncated AVR2 elicitor proteins
    • Luderer, R., Takken, F.L., de Wit, P.J. and Joosten, M.H. (2002) Cladosporium fulvum overcomes Cf-2-mediated resistance by producing truncated AVR2 elicitor proteins. Mol. Microbiol. 45, 875-884.
    • (2002) Mol. Microbiol. , vol.45 , pp. 875-884
    • Luderer, R.1    Takken, F.L.2    de Wit, P.J.3    Joosten, M.H.4
  • 22
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M. and Conery, J.S. (2000) The evolutionary fate and consequences of duplicate genes. Science, 290, 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 24
    • 84868562843 scopus 로고    scopus 로고
    • Genomic tillage and the harvest of fungal phytopathogens
    • Oliver, R. (2012) Genomic tillage and the harvest of fungal phytopathogens. New Phytol. 196, 1015-1023.
    • (2012) New Phytol. , vol.196 , pp. 1015-1023
    • Oliver, R.1
  • 27
    • 84868113304 scopus 로고    scopus 로고
    • Genome update of Botrytis cinerea strains B05.10 and T4
    • Staats, M. and van Kan, J.A. (2012) Genome update of Botrytis cinerea strains B05.10 and T4. Eukaryot. Cell, 11, 1413-1414.
    • (2012) Eukaryot. Cell , vol.11 , pp. 1413-1414
    • Staats, M.1    van Kan, J.A.2
  • 28
    • 34548694060 scopus 로고    scopus 로고
    • Allelic variation in the effector genes of the tomato pathogen Cladosporium fulvum reveals different modes of adaptive evolution
    • Stergiopoulos, I., De Kock, M.J., Lindhout, P. and De Wit, P.J. (2007a) Allelic variation in the effector genes of the tomato pathogen Cladosporium fulvum reveals different modes of adaptive evolution. Mol. Plant-Microbe Interact. 20, 1271-1283.
    • (2007) Mol. Plant-Microbe Interact. , vol.20 , pp. 1271-1283
    • Stergiopoulos, I.1    De Kock, M.J.2    Lindhout, P.3    De Wit, P.J.4
  • 29
    • 33947572881 scopus 로고    scopus 로고
    • Mating-type genes and the genetic structure of a world-wide collection of the tomato pathogen Cladosporium fulvum
    • Stergiopoulos, I., Groenewald, M., Staats, M., Lindhout, P., Crous, P.W. and De Wit, P.J. (2007b) Mating-type genes and the genetic structure of a world-wide collection of the tomato pathogen Cladosporium fulvum. Fungal Genet. Biol. 44, 415-429.
    • (2007) Fungal Genet. Biol. , vol.44 , pp. 415-429
    • Stergiopoulos, I.1    Groenewald, M.2    Staats, M.3    Lindhout, P.4    Crous, P.W.5    De Wit, P.J.6
  • 30
    • 82955200227 scopus 로고    scopus 로고
    • The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
    • Stukenbrock, E.H., Bataillon, T., Dutheil, J.Y., Hansen, T.T., Li, R., Zala, M., McDonald, B.A., Wang, J. and Schierup, M.H. (2011) The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res. 21, 2157-2166.
    • (2011) Genome Res. , vol.21 , pp. 2157-2166
    • Stukenbrock, E.H.1    Bataillon, T.2    Dutheil, J.Y.3    Hansen, T.T.4    Li, R.5    Zala, M.6    McDonald, B.A.7    Wang, J.8    Schierup, M.H.9
  • 31
    • 57149099395 scopus 로고    scopus 로고
    • Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
    • Ter-Hovhannisyan, V., Lomsadze, A., Chernoff, Y.O. and Borodovsky, M. (2008) Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18, 1979-1990.
    • (2008) Genome Res. , vol.18 , pp. 1979-1990
    • Ter-Hovhannisyan, V.1    Lomsadze, A.2    Chernoff, Y.O.3    Borodovsky, M.4
  • 32
    • 27644452304 scopus 로고    scopus 로고
    • Cladosporium fulvum (syn. Passalora fulva), a highly specialized plant pathogen as a model for functional studies on plant pathogenic Mycosphaerellaceae
    • Thomma, B.P., Van Esse, H.P., Crous, P.W. and De Wit, P.J. (2005) Cladosporium fulvum (syn. Passalora fulva), a highly specialized plant pathogen as a model for functional studies on plant pathogenic Mycosphaerellaceae. Mol. Plant Pathol. 6, 379-393.
    • (2005) Mol. Plant Pathol. , vol.6 , pp. 379-393
    • Thomma, B.P.1    Van Esse, H.P.2    Crous, P.W.3    De Wit, P.J.4
  • 33
    • 71549141318 scopus 로고    scopus 로고
    • Asexual fungus Verticillium dahliae is potentially heterothallic
    • Usami, T., Itoh, M. and Amemiya, Y. (2009) Asexual fungus Verticillium dahliae is potentially heterothallic. J. Gen. Plant Pathol. 75, 422-427.
    • (2009) J. Gen. Plant Pathol. , vol.75 , pp. 422-427
    • Usami, T.1    Itoh, M.2    Amemiya, Y.3
  • 34
    • 6344275547 scopus 로고    scopus 로고
    • Cladosporium fulvum circumvents the second functional resistance gene homologue at the Cf-4 locus (Hcr9-4E) by secretion of a stable avr4E isoform
    • Westerink, N., Brandwagt, B.F., de Wit, P.J. and Joosten, M.H. (2004) Cladosporium fulvum circumvents the second functional resistance gene homologue at the Cf-4 locus (Hcr9-4E) by secretion of a stable avr4E isoform. Mol. Microbiol. 54, 533-545.
    • (2004) Mol. Microbiol. , vol.54 , pp. 533-545
    • Westerink, N.1    Brandwagt, B.F.2    de Wit, P.J.3    Joosten, M.H.4
  • 36
    • 79952131885 scopus 로고    scopus 로고
    • Lowly expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation
    • Yang, L., Takuno, S., Waters, E.R. and Gaut, B.S. (2011) Lowly expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation. Mol. Biol. Evol. 28, 1193-1203.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 1193-1203
    • Yang, L.1    Takuno, S.2    Waters, E.R.3    Gaut, B.S.4
  • 37
    • 79953294138 scopus 로고    scopus 로고
    • Fungal proteases and their pathophysiological effects
    • Yike, I. (2011) Fungal proteases and their pathophysiological effects. Mycopathologia, 171, 299-323.
    • (2011) Mycopathologia , vol.171 , pp. 299-323
    • Yike, I.1
  • 38
    • 77952694676 scopus 로고    scopus 로고
    • Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates
    • Zhang, Z.D., Frankish, A., Hunt, T., Harrow, J. and Gerstein, M. (2010) Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Genome Biol. 11, R26.
    • (2010) Genome Biol. , vol.11
    • Zhang, Z.D.1    Frankish, A.2    Hunt, T.3    Harrow, J.4    Gerstein, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.