Exploring the spectroscopic differences of caki-2 cells progressing through the cell cycle while proliferating in vitro

Analyst

Volumn 138, Issue 14, 2013, Pages 3957-3966

  Jimenez Hernandez, M ^a   Hughes, C ^a   Bassan, P ^a   Ball, F ^a   Brown, M D ^a   Clarke, N W ^a,b,c   Gardner, P ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b CHRISTIE HOSPITAL   (United Kingdom)

^c HOPE HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ARTIFICIAL INTELLIGENCE; CELL CYCLE; CELL PROLIFERATION; CELL SIZE; COMPUTER SIMULATION; FLUORESCENCE MICROSCOPY; FLUORESCENT ANTIBODY TECHNIQUE; HUMAN; IN VITRO STUDY; INFRARED SPECTROSCOPY; KIDNEY CARCINOMA; KIDNEY TUMOR; METHODOLOGY; PATHOLOGY; PHYSIOLOGY; PRINCIPAL COMPONENT ANALYSIS; TUMOR CELL CULTURE; PROCEDURES;

ARTIFICIAL INTELLIGENCE; CARCINOMA, RENAL CELL; CELL CYCLE; CELL PROLIFERATION; CELL SIZE; COMPUTER SIMULATION; FLUORESCENT ANTIBODY TECHNIQUE; HUMANS; KIDNEY NEOPLASMS; MICROSCOPY, FLUORESCENCE; PRINCIPAL COMPONENT ANALYSIS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TUMOR CELLS, CULTURED; IN VITRO TECHNIQUES;

EID: 84891724180     PISSN: 00032654     EISSN: 13645528     Source Type: Journal    
DOI: 10.1039/c3an00507k     Document Type: Article

References (35)

1. E. Gazi, J. Dwyer, N. P. Lockyer, J. Miyan, P. Gardner, C. Hart, et al. Fixation protocols for subcellular imaging by synchrotron-based Fourier transform infrared microspectroscopy, Biopolymers, 2005, 77(1), 18-30.
2. R. Gasper, J. Dewelle, R. Kiss, T. Mijatovic and E. Goormaghtigh, IR spectroscopy as a new tool for evidencing antitumor drug signatures, Biochim. Biophys. Acta, Biomembr., 2009, 1788(6), 1263-1270.
3. F. Draux, P. Jeannesson, C. Gobinet, J. Sule-Suso, J. Pijanka, C. Sandt, et al IR spectroscopy reveals effect of non-cytotoxic doses of anti-tumour drug on cancer cells, Anal. Bioanal. Chem., 2009, 395(7), 2293-2301.
4. A. Derenne, R. Gasper and E. Goormaghtigh, The FTIR spectrum of prostate cancer cells allows the classification of anticancer drugs according to their mode of action, Analyst, 2011, 136(6), 1134.
5. G. Bellisola, M. Delia Peruta, M. Vezzalini, E. Moratti, L. Vaccari, G. Birarda, et al. Tracking InfraRed signatures of drugs in cancer cells by Fourier Transform microspectroscopy, Analyst, 2010, 135(12), 3077.
6. K. R. Flower, I. Khalifa, P. Bassan, D. Demoulin, E. Jackson, N. P. Lockyer, et al. Synchrotron FTIR analysis of drug treated ovarian A2780 cells: an ability to differentiate cell response to different drugs7, Analyst, 2011, 136(3), 498-507.
7. C. Hughes, M. D. Brown, N. W. Clarke, K. R. Flower and P. Gardner, Investigating cellular responses to novel chemotherapeutics in renal cell carcinoma using SR-FTIR spectroscopy, Analyst, 2012, 137(20), 4720-4726.
8. D. B. Longley, D. P. Harkin and P. G. Johnston, 5- Fluorouracil: mechanisms of action and clinical strategies, Nat. Rev. Cancer, 2003, 3(5), 330-338.
9. H. N. Holman, M. C. Martin, E. A. Blakely, K. Bjornstad and W. R. McKinney, IR spectroscopic characteristics of cell cycle and cell death probed by synchrotron radiation based fourier transform IR spectromicroscopy, Biopolymers, 2000, 57(6), 329-335.
10. S. Boydstonwhite, M. Romeo, T. Chernenko, A. Regina, M. Miljkovic and M. Diem, Cell-cycle-dependent variations in FTIR micro-spectra of single proliferating HeLa cells: principal component and artificial neural network analysis, Biochim. Biophys. Acta, Biomembr., 2006, 1758(7), 908-914.
11. M. Romeo, B. Mohlenhoff and M. Diem, Infrared microspectroscopy of human cells: causes for the spectral variance of oral mucosa (buccal) cells, Vib. Spectrosc., 2006, 42(1), 9-14.
12. J. Lee, E. Gazi, J. Dwyer, M. D. Brown, N. W. Clarke, J. M. Nicholson, et al Optical artefacts in transflection mode FTIR microspectroscopic images of single cells on a biological support: The effect of back-scattering into collection optics, Analyst, 2007, 132(8), 750-755.
13. P. Bassan, H. J. Byrne, F. Bonnier, J. Lee, P. Dumas and P. Gardner, Resonant Mie scattering in infrared spectroscopy of biological materials - understanding the 'dispersion artefact', Analyst, 2009, 134(8), 1586.
14. P. Bassan, H. J. Byrne, J. Lee, F. Bonnier, C. Clarke, P. Dumas, et al. Reflection contributions to the dispersion artefact in FTIR spectra of single biological cells, Analyst, 2009, 134(6), 1171-1175.
15. C. Hughes, M. D. Brown, F. J. Ball, G. Monjardez, N. w. Clarke, K. R. Flower, et al. Highlighting a need to distinguish cell cycle signatures from cellular responses to chemotherapeutics in SR-FTIR spectroscopy, Analyst, 2012, 137(24), 5736-5742.
16. M. G. Cooper, The cell a molecular approach, ed. Sinauer Associates, Boston, 5th edn, 2000.
17. P. Bassan, A. Kohler, H. Martens, J. Lee, H. J. Byrne, P. Dumas, et al Resonant Mie scattering (RMieS) correction of infrared spectra from highly scattering biological samples, Analyst, 2010, 135(2), 268-277.
18. P. Bassan, A. Kohler, H. Martens, J. Lee, E. Jackson, N. Lockyer, et al RMieS-EMSC correction for infrared spectra of biological cells: extension using full Mie theory and GPU computing, J. Biophotonics, 2010, 3(8-9), 609-620.
19. H. Nishitani, Z. Lygerou and T. Nishimoto, Proteolysis of DNA replication licensing factor Cdtl in S-phase is performed independently of geminin through its N-terminal region, J. Biol. Chem., 2004, 279(29), 30807- 30816.
20. A. Sakaue-Sawano, H. Kurokawa, T. Morimura, A. Hanyu, H. Hama, H. Osawa, et al Visualizing spatiotemporal dynamics of multicellular cell-cycle progression, Cell, 2008, 132(3), 487-498.
21. M. Fujita, Cell Div., 2006, 1(1), 22.
22. T. J. McGarry and M. W. Kirschner, Geminin, an inhibitor of DNA replication, is degraded during mitosis, Cell, 1998, 93(6), 1043-1053.
23. G. Xouri, Z. Lygerou, H. Nishitani, V. Pachnis, P. Nurse and S. Taraviras, Cdtl and geminin are down-regulated upon cell cycle exit and are over-expressed in cancer-derived cell lines, Eur. J. Biochem., 2004, 271(16), 3368-3378.
24. G. Clemens, K. R. Flower, A. P. Henderson, A. Whiting, S. A. Przyborski, M. Jimenez-Hernandez, et al. The action of all-trans-retinoic acid (ATRA) and synthetic retinoid analogues (EC19 and EC23) on human pluripotent stem cells differentiation investigated using single cell infrared microspectroscopy, Mol. BioSyst., 2013, 9(4), 677-692.
25. J. M. Schubert, A. I. Mazur, B. Bird, M. Miljkovic and M. Diem, Single point vs. mapping approach for spectral cytopathology (SCP), J. Biophotonics, 2010, 3(8-9), 588-596.
26. D. Morgan, The Cell Cycle: Principles of Control, Oxford University Press, 1st edn, 2007.
27. S. Boydston-White, T. Gopen, S. Houser, J. Bargonetti and M. Diem, Infrared spectroscopy of human tissue. V. Infrared spectroscopic studies of myeloid leukemia (ML-1) cells at different phases of the cell cycle, Biospectroscopy, 1999, 5(4), 219-227.
28. C. Matthaus, S. Boydston-White, M. Miljkovic, M. Romeo and M. Diem, Raman and infrared microspectral imaging of mitotic cells, Appl. Spectrosc., 2006, 60(1), 1-8, PMCID: 2732123.
29. P. Bassan and P. Gardner, Spectral correction for infrared studies of single biological cells, in Biomedical Applications of Synchrotron Radiation Infrared Microscopy, ed. D. Moss, RSC, 2010.
30. A. Savitzky and M. J. E. Golay, Smoothing and Differentiation of Data by Simplified Least Squares Procedures, Anal Chem., 1964, 36(8), 1627-1639.
31. J. Clayden, N. Greeves and S. Warren, Organic Chemistry, Oxford University Press, Oxford, 1st edn, 2001.
32. Z. Movasaghi, S. Rehman and D. I. ur Rehman, Fourier Transform Infrared (FTIR) Spectroscopy of Biological Tissues, Appl Spectrosc. Rev., 2008, 43(2), 134-179.
33. C.-C. Chang and C.-J. Lin, LIBSVM: A library for support vector machines, ACM Trans. Intell. Syst. Technol., 2011, 2(3), 1-27.
34. H. Najbjerg, N. K. Afseth, J. F. Young, H. C. Bertram, M. E. Pedersen, S. Grimmer, et al. Monitoring cellular responses upon fatty acid exposure by Fourier transform infrared spectroscopy and Raman spectroscopy, Analyst, 2011, 136(8), 1649-1658.
35. M. G. P. Diem and J. M. Chalmers, Vibrational spectroscopy for medical diagnosis, Wiley, Boston, US, 1st edn, 2008.