Advances in functional magnetic resonance imaging of the human brainstem

NeuroImage

Volumn 86, Issue , 2014, Pages 91-98

  Beissner, Florian ^a,b   Schumann, Andy ^a   Brunn, Franziska ^a   Eisenträger, Daniela ^a   Bär, Karl Jürgen ^a  

^a JENA UNIVERSITY HOSPITAL   (Germany)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

Brainstem; Brainstem nuclei; Functional magnetic resonance imaging; Independent component analysis; Intrinsic connectivity networks; Physiological noise correction; Resting state

Indexed keywords

ADULT; ARTICLE; BRAIN CORTEX; BRAIN MAPPING; BRAIN STEM; CONNECTOME; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; HUMAN EXPERIMENT; IMAGE PROCESSING; INDEPENDENT COMPONENT ANALYSIS; MALE; NERVE CELL STIMULATION; NEUROANATOMY; NEUROIMAGING; NORMAL HUMAN; PRIORITY JOURNAL; REPRODUCIBILITY; RESTING STATE NETWORK; VALIDATION PROCESS; BRAIN NUCLEUS; BRAIN REGION; CONTROLLED STUDY; IMAGE ANALYSIS; NERVE CELL NETWORK; SIGNAL DETECTION; SIGNAL NOISE RATIO; STANDARDIZATION;

BRAINSTEM; BRAINSTEM NUCLEI; FUNCTIONAL MAGNETIC RESONANCE IMAGING; INDEPENDENT COMPONENT ANALYSIS; INTRINSIC CONNECTIVITY NETWORKS; PHYSIOLOGICAL NOISE CORRECTION; RESTING STATE;

ADULT; ALGORITHMS; BRAIN MAPPING; BRAIN STEM; CEREBRAL CORTEX; EVOKED POTENTIALS; FEMALE; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; MALE; NERVE NET; NEURAL PATHWAYS; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 84891632680     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.07.081     Document Type: Article

References (32)

1. Ashburner J., Friston K.J. Unified segmentation. NeuroImage 2005, 26(3):839-851. 10.1016/j.neuroimage.2005.02.018.
2. Beckmann C.F., Smith S.M. Probabilistic independent component analysis for functional magnetic resonance imaging. IEEE Trans. Med. Imaging 2004, 23(2):137-152.
3. Beissner F., Deichmann R., Baudrexel S. fMRI of the brainstem using dual-echo EPI. NeuroImage 2011, 55(4):1593-1599. 10.1016/j.neuroimage.2011.01.042.
4. Belmaker R.H., Agam G. Major depressive disorder. N. Engl. J. Med. 2008, 358(1):55-68. 10.1056/NEJMra073096.
5. Benarroch E. The central autonomic network: functional organization, dysfunction, and perspective. Mayo Clin. Proc. Mayo Clin. 1993, 68:988.
6. Briand L.A., Gritton H., Howe W.M., Young D.A., Sarter M. Modulators in concert for cognition: modulator interactions in the prefrontal cortex. Prog. Neurobiol. 2007, 83(2):69-91. 10.1016/j.pneurobio.2007.06.007.
7. Brook R.D., Julius S. Autonomic imbalance, hypertension, and cardiovascular risk. Am. J. Hypertens. 2000, 13(6 Pt 2):112S-122S.
8. Brooks J.C.W., Beckmann C.F., Miller K.L., Wise R.G., Porro C.A., Tracey I., Jenkinson M. Physiological noise modelling for spinal functional magnetic resonance imaging studies. NeuroImage 2008, 39(2):680-692. 10.1016/j.neuroimage.2007.09.018.
9. Calhoun V.D., Adali T., Pearlson G.D., Pekar J.J. A method for making group inferences from functional MRI data using independent component analysis. Hum. Brain 2001, 151:140-151. 10.1002/hbm.
10. Cordes D., Nandy R. Estimation of the intrinsic dimensionality of fMRI data. NeuroImage 2006, 29(1):145-154.
11. D'Ardenne K., McClure S.M., Nystrom L.E., Cohen J.D. BOLD responses reflecting dopaminergic signals in the human ventral tegmental area. Science 2008, 319(5867):1264-1267. 10.1126/science.1150605.
12. Eippert F., Bingel U., Schoell E.D., Yacubian J., Klinger R., Lorenz J., Büchel C. Activation of the opioidergic descending pain control system underlies placebo analgesia. Neuron 2009, 63(4):533-543. 10.1016/j.neuron.2009.07.014.
13. Formisano E., Esposito F., Di Salle F., Goebel R. Cortex-based independent component analysis of fMRI time series. Magn. Reson. Imaging 2004, 22(10):1493-1504. 10.1016/j.mri.2004.10.020.
14. Greve D.N., Fischl B. Accurate and robust brain image alignment using boundary-based registration. NeuroImage 2009, 48(1):63-72. 10.1016/j.neuroimage.2009.06.060.
15. Griswold M.A., Jakob P.M., Heidemann R.M., Nittka M., Jellus V., Wang J., Kiefer B., et al. Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn. Reson. Med. 2002, 47(6):1202-1210. 10.1002/mrm.10171.
16. Habas C., Kamdar N., Nguyen D., Prater K., Beckmann C.F., Menon V., Greicius M.D. Distinct cerebellar contributions to intrinsic connectivity networks. J. Neurosci. 2009, 29(26):8586-8594. 10.1523/JNEUROSCI.1868-09.2009.
17. Harvey A.K., Pattinson K.T.S., Brooks J.C.W., Mayhew S.D., Jenkinson M., Wise R.G. Brainstem functional magnetic resonance imaging: disentangling signal from physiological noise. J. Magn. Reson. Imaging 2008, 28(6):1337-1344.
18. Heinricher M.M., Tavares I., Leith J.L., Lumb B.M. Descending control of nociception: specificity, recruitment and plasticity. Brain Res. Rev. 2009, 60(1):214-225. 10.1016/j.brainresrev.2008.12.009.
19. Hyvärinen A. Fast and robust fixed-point algorithms for independent component analysis. IEEE Trans. Neural Netw. 1999, 10(3):626-634.
20. Iacovella V., Hasson U. The relationship between BOLD signal and autonomic nervous system functions: implications for processing of "physiological noise". Magn. Reson. Imaging 2011, 29:1338-1345.
21. Khalili-Mahani N., Chang C., Van Osch M.J., Veer I.M., Van Buchem M.A., Dahan A., Beckmann C.F., et al. The impact of "physiological correction" on functional connectivity analysis of pharmacological resting state fMRI. NeuroImage 2012, 65:499-510. 10.1016/j.neuroimage.2012.09.044.
22. Klose U., Strik C., Kiefer C., Grodd W. Detection of a relation between respiration and CSF pulsation with an echoplanar technique. J. Magn. Reson. Imaging:JMRI2 2000, 11(4):438-444.
23. Kong Y., Jenkinson M., Andersson J., Tracey I., Brooks J.C.W. Assessment of physiological noise modelling methods for functional imaging of the spinal cord. NeuroImage 2012, 60(2):1538-1549. 10.1016/j.neuroimage.2011.11.077.
24. Koutcherov Y., Huang X.F., Halliday G., Paxinos G.T. Organization of human brain stem nuclei. The Human Nervous System 2009, 267-320. Elsevier, London. G.T. Paxinos, J.K. Mai (Eds.).
25. McKeown M.J., Makeig S., Brown G.G., Jung T.P., Kindermann S.S., Bell A.J., Sejnowski T.J. Analysis of fMRI data by blind separation into independent spatial components. Hum. Brain Mapp. 1998, 6(3):160-188.
26. Minka T. Automatic choice of dimensionality for PCA. Technical Report 514 2000.
27. Munkres J. Algorithms for the assignment and transportation problems. J. Soc. Ind. Appl. Math. 1957, 5(1):32-38.
28. Obeso J.A., Rodriguez-Oroz M.C., Goetz C.G., Marin C., Kordower J.H., Rodriguez M., Hirsch E.C., et al. Missing pieces in the Parkinson's disease puzzle. Nat. Med. 2010, 16(6):653-661. 10.1038/nm.2165.
29. Smith S.M., Fox P., Miller K. Correspondence of the brain's functional architecture during activation and rest. Proceedings of the National Academy of Sciences of the United States of America 2009, 106(31):13040-13045. 10.1073/pnas.0905267106.
30. Thompson S.K., Von Kriegstein K., Deane-Pratt A., Marquardt T., Deichmann R., Griffiths T.D., McAlpine D. Representation of interaural time delay in the human auditory midbrain. Nat. Neurosci. 2006, 9(9):1096-1098. 10.1038/nn1755.
31. Tracey I., Mantyh P.W. The cerebral signature for pain perception and its modulation. Neuron 2007, 55(3):377-391. 10.1016/j.neuron.2007.07.012.
32. Wessel N. Nonlinear analysis of complex phenomena in cardiological data. Herzschrittmacherther. Elektrophysiol. 2000, 11:159-173.