A C library for retrieving specific reactions from the BioModels database

Bioinformatics

Volumn 30, Issue 1, 2014, Pages 129-130

  Neal, M L ^a   Galdzicki, M ^a   Gallimore, J T ^a,b   Sauro, H M ^a  

^a University of Washington   (United States)

^b WOFFORD COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; COMPUTER LANGUAGE; FACTUAL DATABASE; INTERNET; PROCEDURES; SACCHAROMYCES CEREVISIAE; SYSTEMS BIOLOGY; ARTICLE; METHODOLOGY;

BIOCHEMICAL PHENOMENA; DATABASES, FACTUAL; INTERNET; PROGRAMMING LANGUAGES; SACCHAROMYCES CEREVISIAE; SYSTEMS BIOLOGY;

EID: 84891357532     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt567     Document Type: Article

References (6)

1. Bornstein, B.J. et al. (2008) LibSBML: an API library for SBML. Bioinformatics, 24, 880.
2. Hucka, M. et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
3. Li, C. et al. (2010) BioModels database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst. Biol., 4, 92.
4. Neal, M.L. and Sauro, H.M. (2012) SBML Reaction Finder: retrieve and extract specific reactions from the BioModels database. Nat. Precedings, [Epub ahead of print, doi:10.1038/npre.2012.7028.1, March 27, 2012].
5. Sauro, H.M. and Bergmann, F. (2008) Standards and ontologies in computational systems biology. Essays Biochem., 45, 211.
6. Teusink, B. et al. (1998) The danger of metabolic pathways with turbo design. Trends Biochem. Sci., 23, 162.