메뉴 건너뛰기




Volumn 8, Issue 1, 2014, Pages 31-39

Bacterial profiling of White Plague Disease in a comparative coral species framework

Author keywords

16S rRNA gene microarray; coral disease; Gulf of Thailand; Pavona duerdeni; Porites lutea; White Plague Disease (WPD)

Indexed keywords

RNA 16S;

EID: 84891157526     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2013.127     Document Type: Article
Times cited : (120)

References (60)
  • 2
    • 0035885896 scopus 로고    scopus 로고
    • White-band disease and the changing face of Caribbean coral reefs
    • DOI 10.1023/A:1013103928980
    • Aronson RB, Precht WF. (2001). White-band disease and the changing face of Caribbean coral reefs. Hydrobiologia 460: 25-38. (Pubitemid 34077746)
    • (2001) Hydrobiologia , vol.460 , pp. 25-38
    • Aronson, R.B.1    Precht, W.F.2
  • 3
    • 26244450806 scopus 로고    scopus 로고
    • Bacterial Strain BA-3 and a filterable factor cause a white plague-like disease in corals from the Eilat coral reef
    • Barash Y, Sulam R, Loya Y, Rosenberg E. (2005). Bacterial Strain BA-3 and a filterable factor cause a white plague-like disease in corals from the Eilat coral reef. Aquat Microb Ecol 40: 183-189. (Pubitemid 41414984)
    • (2005) Aquatic Microbial Ecology , vol.40 , Issue.2 , pp. 183-189
    • Barash, Y.1    Sulam, R.2    Loya, Y.3    Rosenberg, E.4
  • 4
    • 79954995813 scopus 로고    scopus 로고
    • Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral montastraea annularis
    • Barott KL, Rodriguez-Brito B, Janouskovec J, Marhaver KL, Smith JE, Keeling P et al. (2011). Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environ Microbiol 13: 1192-1204.
    • (2011) Environ Microbiol , vol.13 , pp. 1192-1204
    • Barott, K.L.1    Rodriguez-Brito, B.2    Janouskovec, J.3    Marhaver, K.L.4    Smith, J.E.5    Keeling, P.6
  • 5
    • 22744438425 scopus 로고    scopus 로고
    • Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef
    • DOI 10.1111/j.1462-2920.2005.00793.x
    • Bourne DG, Munn CB. (2005). Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef. Environ Microbiol 7: 1162-1174. (Pubitemid 41026516)
    • (2005) Environmental Microbiology , vol.7 , Issue.8 , pp. 1162-1174
    • Bourne, D.G.1    Munn, C.B.2
  • 7
    • 84857113448 scopus 로고    scopus 로고
    • Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease
    • Cardenas A, Rodriguez RL, Pizarro V, Cadavid LF, Arevalo-Ferro C. (2012). Shifts in bacterial communities of two Caribbean reef-building coral species affected by white plague disease. ISME J 6: 502-512.
    • (2012) ISME J , vol.6 , pp. 502-512
    • Cardenas, A.1    Rodriguez, R.L.2    Pizarro, V.3    Cadavid, L.F.4    Arevalo-Ferro, C.5
  • 8
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR. (1993). Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18: 117-143. (Pubitemid 24409223)
    • (1993) Australian Journal of Ecology , vol.18 , Issue.1 , pp. 117-143
    • Clarke, K.R.1
  • 10
    • 84873306071 scopus 로고    scopus 로고
    • Bacterial assemblages shifts from healthy to yellow band disease states in the dominant reef coral montastraea faveolata
    • Cróquer A, Bastidas C, Elliott A, Sweet M. (2013). Bacterial assemblages shifts from healthy to yellow band disease states in the dominant reef coral Montastraea faveolata. Environ Microbiol Rep 5: 90-96.
    • (2013) Environ Microbiol Rep , vol.5 , pp. 90-96
    • Cróquer, A.1    Bastidas, C.2    Elliott, A.3    Sweet, M.4
  • 13
    • 34248159346 scopus 로고    scopus 로고
    • High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
    • DOI 10.1007/s00248-006-9134-9
    • DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL. (2007). High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol 53: 371-383. (Pubitemid 46716624)
    • (2007) Microbial Ecology , vol.53 , Issue.3 , pp. 371-383
    • DeSantis, T.Z.1    Brodie, E.L.2    Moberg, J.P.3    Zubieta, I.X.4    Piceno, Y.M.5    Andersen, G.L.6
  • 14
    • 0005572413 scopus 로고
    • Isolation of bacteria from the corallum of porites lobata (vaughn) and its possible significance
    • DiSalvo LH. (1969). Isolation of bacteria from the corallum of Porites lobata (Vaughn) and its possible significance. Am Zoologist 9: 735-740.
    • (1969) Am Zoologist , vol.9 , pp. 735-740
    • DiSalvo, L.H.1
  • 15
    • 51249182666 scopus 로고
    • Vitality of reef coral populations off key largo, florida-recruitment and mortality
    • Dustan P. (1977). Vitality of reef coral populations off Key Largo, Florida-recruitment and mortality. Environ Geol 2: 51-58.
    • (1977) Environ Geol , vol.2 , pp. 51-58
    • Dustan, P.1
  • 17
    • 0000122573 scopus 로고
    • Phylip-phylogeny inference package (version 3.65
    • Felsenstein J. (1989). PHYLIP-Phylogeny Inference Package (Version 3.65). Cladistics 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 18
    • 0036253488 scopus 로고    scopus 로고
    • Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces
    • DOI 10.1128/AEM.68.5.2214-2228.2002
    • Frias-Lopez J, Zerkle AL, Bonheyo GT, Fouke BW. (2002). Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces. Appl Environ Microbiol 68: 2214-2228. (Pubitemid 34477815)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.5 , pp. 2214-2228
    • Frias-Lopez, J.1    Zerkle, A.L.2    Bonheyo, G.T.3    Fouke, B.W.4
  • 19
    • 33745977497 scopus 로고    scopus 로고
    • Photosynthesis and calcification at cellular, organismal and community levels in coral reefs: A review on interactions and control by carbonate chemistry
    • Gattuso JP, Allemand D, Frankignoulle M. (1999). Photosynthesis and calcification at cellular, organismal and community levels in coral reefs: a review on interactions and control by carbonate chemistry. Am Zoologist 39: 160-183.
    • (1999) Am Zoologist , vol.39 , pp. 160-183
    • Gattuso, J.P.1    Allemand, D.2    Frankignoulle, M.3
  • 20
    • 1342288026 scopus 로고    scopus 로고
    • Affy - Analysis of Affymetrix GeneChip data at the probe level
    • DOI 10.1093/bioinformatics/btg405
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. (2004). affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315. (Pubitemid 38262761)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 24
    • 77649160808 scopus 로고    scopus 로고
    • Microbial functional structure of montastraea faveolata, an important caribbean reef-building coral, differs between healthy and yellow-band diseased colonies
    • Kimes NE, Van Nostrand JD, Weil E, Zhou J, Morris PJ. (2010). Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies. Environ Microbiol 12: 541-556.
    • (2010) Environ Microbiol , vol.12 , pp. 541-556
    • Kimes, N.E.1    Van Nostrand, J.D.2    Weil, E.3    Zhou, J.4    Morris, P.J.5
  • 25
    • 33747354385 scopus 로고    scopus 로고
    • Bacteria associated with mucus and tissues of the coral oculina patagonica in summer and winter
    • Koren O, Rosenberg E. (2006). Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter. Appl Environ Microbiol 72: 5254-5259.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5254-5259
    • Koren, O.1    Rosenberg, E.2
  • 26
    • 0001857117 scopus 로고
    • Nucleic acid techniques in bacterial systematics. In
    • Stackebrandt E, Goodfellow M (eds) Wiley: New York, NY, USA
    • Lane DJ. (1991). Nucleic acid techniques in bacterial systematics. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics. Wiley: New York, NY, USA, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 27
    • 4043135983 scopus 로고    scopus 로고
    • Discovery of symbiotic nitrogen-fixing cyanobacteria in corals
    • DOI 10.1126/science.1099128
    • Lesser MP, Mazel CH, Gorbunov MY, Falkowski PG. (2004). Discovery of symbiotic nitrogen-fixing cyanobacteria in corals. Science 305: 997-1000. (Pubitemid 39071773)
    • (2004) Science , vol.305 , Issue.5686 , pp. 997-1000
    • Lesser, M.P.1    Mazel, C.H.2    Gorbunov, M.Y.3    Falkowski, P.G.4
  • 29
    • 77952514796 scopus 로고    scopus 로고
    • Archaea, bacteria, and algal plastids associated with the reef-building corals siderastrea stellata and mussismilia hispida from buzios, south atlantic ocean, brazil
    • Lins-de-Barros MM, Vieira RP, Cardoso AM, Monteiro VA, Turque AS, Silveira CB et al. (2010). Archaea, Bacteria, and algal plastids associated with the reef-building corals Siderastrea stellata and Mussismilia hispida from Buzios, South Atlantic Ocean, Brazil. Microb Ecol 59: 523-532.
    • (2010) Microb Ecol , vol.59 , pp. 523-532
    • Lins-de-Barros, M.M.1    Vieira, R.P.2    Cardoso, A.M.3    Monteiro, V.A.4    Turque, A.S.5    Silveira, C.B.6
  • 30
    • 84857122937 scopus 로고    scopus 로고
    • An improved greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
    • McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A et al. (2012). An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 6: 610-618.
    • (2012) ISME J , vol.6 , pp. 610-618
    • McDonald, D.1    Price, M.N.2    Goodrich, J.3    Nawrocki, E.P.4    DeSantis, T.Z.5    Probst, A.6
  • 32
    • 77957812944 scopus 로고    scopus 로고
    • Coralassociated bacterial assemblages: Current knowledge and the potential for climate-driven impacts
    • Mouchka ME, Hewson I, Harvell CD. (2010). Coralassociated bacterial assemblages: current knowledge and the potential for climate-driven impacts. Integr Comp Biol 50: 662-674.
    • (2010) Integr Comp Biol , vol.50 , pp. 662-674
    • Mouchka, M.E.1    Hewson, I.2    Harvell, C.D.3
  • 33
    • 0001462989 scopus 로고
    • Assimilation of photosynthetic products of zooxanthellae by a reef coral
    • Muscatine L, Cernichiari E. (1969). Assimilation of photosynthetic products of zooxanthellae by a reef coral. Biol Bull 137: 506-523.
    • (1969) Biol Bull , vol.137 , pp. 506-523
    • Muscatine, L.1    Cernichiari, E.2
  • 36
    • 0038739284 scopus 로고    scopus 로고
    • The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis
    • DOI 10.1046/j.1462-2920.2003.00427.x
    • Pantos O, Cooney RP, Le Tissier MDA, Barer MR, O'Donnell AG, Bythell JC. (2003). The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis. Environ Microbiol 5: 370-382. (Pubitemid 36572799)
    • (2003) Environmental Microbiology , vol.5 , Issue.5 , pp. 370-382
    • Pantos, O.1    Cooney, R.P.2    Le Tissier, M.D.A.3    Barer, M.R.4    O'Donnell, A.G.5    Bythell, J.C.6
  • 38
    • 84882706931 scopus 로고    scopus 로고
    • A language and environment for statistical computing
    • R Development Core Team Austria
    • R Development Core Team (2010). A Language and Environment for Statistical Computing. R Foundation for Statistical Computing: Vienna, Austria.
    • (2010) R Foundation for Statistical Computing: Vienna
  • 40
    • 47349118317 scopus 로고    scopus 로고
    • Genome analysis of the coral bleaching pathogen vibrio shiloi
    • Reshef L, Ron E, Rosenberg E. (2008). Genome analysis of the coral bleaching pathogen Vibrio shiloi. Arch Microbiol 190: 185-194.
    • (2008) Arch Microbiol , vol.190 , pp. 185-194
    • Reshef, L.1    Ron, E.2    Rosenberg, E.3
  • 41
    • 0032211678 scopus 로고    scopus 로고
    • Coral diseases: What is really known?
    • DOI 10.1016/S0169-5347(98)01460-8
    • Richardson L. (1998). Coral diseases: what is really known? Trends Ecol Evol 13: 438-443. (Pubitemid 28487314)
    • (1998) Trends in Ecology and Evolution , vol.13 , Issue.11 , pp. 438-443
    • Richardson, L.L.1
  • 44
    • 0035885884 scopus 로고    scopus 로고
    • Integrating microbiological, microsensor, molecular, and physiologic techniques in the study of coral disease pathogenesis
    • DOI 10.1023/A:1013187723831
    • Richardson L, Smith G, Ritchie K, Carlton R. (2001). Integrating microbiological, microsensor, molecular, and physiologic techniques in the study of coral disease pathogenesis. Hydrobiologia 460: 71-89. (Pubitemid 34077750)
    • (2001) Hydrobiologia , vol.460 , pp. 71-89
    • Richardson, L.L.1    Smith, G.W.2    Ritchie, K.B.3    Carlton, R.G.4
  • 45
    • 22744437753 scopus 로고    scopus 로고
    • Microbial communities of coral surface mucopolysaccharide layers. In
    • Rosenberg E, Loya Y (eds) Springer-Verlag: Berlin, Germany
    • Ritchie KB, Smith GW. (2004). Microbial communities of coral surface mucopolysaccharide layers. In: Rosenberg E, Loya Y (eds) Coral Health and Disease. Springer-Verlag: Berlin, Germany, pp 259-263.
    • (2004) Coral Health and Disease , pp. 259-263
    • Ritchie, K.B.1    Smith, G.W.2
  • 46
    • 33750201132 scopus 로고    scopus 로고
    • Regulation of microbial populations by coral surface mucus and mucus-associated bacteria
    • Ritchie KB. (2006). Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Progr Ser 322: 1-14. (Pubitemid 44606066)
    • (2006) Marine Ecology Progress Series , vol.322 , pp. 1-14
    • Ritchie, K.B.1
  • 47
    • 77957265549 scopus 로고    scopus 로고
    • Words matter: Recommendations for clarifying coral disease nomenclature and terminology
    • Rogers CS. (2010). Words matter: recommendations for clarifying coral disease nomenclature and terminology. Dis Aquat Organ 91: 167-175.
    • (2010) Dis Aquat Organ , vol.91 , pp. 167-175
    • Rogers, C.S.1
  • 48
    • 0034890481 scopus 로고    scopus 로고
    • Diversity of bacteria associated with the Caribbean coral Montastraea franksi
    • DOI 10.1007/s003380100138
    • Rohwer F, Breitbart M, Jara J, Azam F, Knowlton N. (2001). Diversity of bacteria associated with the Caribbean coral Montastrea franksi. Coral Reefs 20: 85-91. (Pubitemid 32770406)
    • (2001) Coral Reefs , vol.20 , Issue.1 , pp. 85-91
    • Rohwer, F.1    Breitbart, M.2    Jara, J.3    Azam, F.4    Knowlton, N.5
  • 51
    • 84858865481 scopus 로고    scopus 로고
    • In: Dubinsky Z, Stambler N (eds). Coral Reefs: An Ecosystem in Transition.Springer: Netherlands
    • Rosenberg E, Kushmaro A. In: Dubinsky Z, Stambler N (eds). Microbial Diseases of Corals: Pathology and Ecology. Coral Reefs: An Ecosystem in Transition. Springer: Netherlands 2011, pp 451-464.
    • (2011) Microbial Diseases of Corals: Pathology and Ecology , pp. 451-464
    • Rosenberg, E.1    Kushmaro, A.2
  • 53
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, communitysupported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB et al. (2009). Introducing mothur: open-source, platform-independent, communitysupported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 54
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey JD. (2002). A direct approach to false discovery rates. J R Stat Soc B 64: 479-498.
    • (2002) J R Stat Soc B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 55
    • 67349105701 scopus 로고    scopus 로고
    • Bacterial diversity and white plague disease-associated community changes in the caribbean coral montastraea faveolata
    • Sunagawa S, DeSantis TZ, Piceno YM, Brodie EL, DeSalvo MK, Voolstra CR et al. (2009). Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J 3: 512-521.
    • (2009) ISME J , vol.3 , pp. 512-521
    • Sunagawa, S.1    DeSantis, T.Z.2    Piceno, Y.M.3    Brodie, E.L.4    DeSalvo, M.K.5    Voolstra, C.R.6
  • 56
    • 77949674527 scopus 로고    scopus 로고
    • Threatened corals provide underexplored microbial habitats
    • Sunagawa S, Woodley CM, Medina M. (2010). Threatened corals provide underexplored microbial habitats. PLoS One 5: e9554.
    • (2010) PLoS One , vol.5
    • Sunagawa, S.1    Woodley, C.M.2    Medina, M.3
  • 57
    • 1342332601 scopus 로고    scopus 로고
    • Disease and immunity in Caribbean and Indo-Pacific zooxanthellate corals
    • Sutherland KP, Porter JW, Torres C. (2004). Disease and immunity in Caribbean and Indo-Pacific zooxanthellate corals. Mar Ecol Progr Ser 266: 273-302. (Pubitemid 38261011)
    • (2004) Marine Ecology Progress Series , vol.266 , pp. 273-302
    • Sutherland, K.P.1    Porter, J.W.2    Torres, C.3
  • 59
    • 33646228386 scopus 로고    scopus 로고
    • Status and progress in coral reef disease research
    • Weil E, Smith G, Gil-Agudelo DL. (2006). Status and progress in coral reef disease research. Dis Aquat Organ 69: 1-7.
    • (2006) Dis Aquat Organ , vol.69 , pp. 1-7
    • Weil, E.1    Smith, G.2    Gil-Agudelo, D.L.3
  • 60
    • 20644441870 scopus 로고    scopus 로고
    • Coral disease on the great barrier reef. In
    • Rosenberg E, Loya Y (eds). Springer-Verlag: Berlin, Germany
    • Willis BL, Page CA, Dinsdale EA. (2004). Coral disease on the Great Barrier Reef. In: Rosenberg E, Loya Y (eds). Coral Health and Disease. Springer-Verlag: Berlin, Germany, pp 69-104.
    • (2004) Coral Health and Disease , pp. 69-104
    • Willis, B.L.1    Page, C.A.2    Dinsdale, E.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.