Changes in the organization of the genome during the mammalian cell cycle

Genome Biology

Volumn 14, Issue 12, 2013, Pages

  Giorgetti, Luca ^a   Servant, Nicolas ^b   Heard, Edith ^a  

^a INSTITUT CURIE   (France)

^b INSERM U900   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN;

ANIMAL; ARTICLE; CELL CYCLE; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMOSOME; CHROMOSOME SEGREGATION; CHROMOSOME STRUCTURE; CONFORMATION; DNA PACKAGING; DNA REPLICATION; ENHANCER REGION; FLUORESCENCE IN SITU HYBRIDIZATION; GENE CONTROL; GENE INTERACTION; GENE LOCUS; GENE STRUCTURE; GENETIC ORGANIZATION; GENETICS; GENOME ANALYSIS; HUMAN; HUMAN CHROMOSOME; HUMAN GENOME; MITOSIS; PROCEDURES; PROMOTER REGION; REGULATORY SEQUENCE; THREE DIMENSIONAL IMAGING; TOPOLOGICALLY ASSOCIATING DOMAIN;

ANIMALS; CELL CYCLE; CHROMATIN; CHROMOSOMES, HUMAN; CHROMOSOMES, MAMMALIAN; GENETICS; GENOME, HUMAN; HUMANS; IMAGING, THREE-DIMENSIONAL; METHODS; NUCLEIC ACID CONFORMATION;

MAMMALIA;

EID: 84891137247     PISSN: None     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb4147     Document Type: Article

References (10)

1. Lieberman-Aiden E, Berkum NL V, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 2009, 326:289-293. 10.1126/science.1181369, 2858594, 19815776.
2. Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, Yen C-A, Schmitt AD, Espinoza CA, Ren B. A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature 2013, 503:290-294.
3. Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012, 485:376-380. 10.1038/nature11082, 3356448, 22495300.
4. Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL, Meisig J, Sedat J, Gribnau J, Barillot E, Blüthgen N, Dekker J, Heard E. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 2012, 485:381-385. 10.1038/nature11049, 3555144, 22495304.
5. Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 2012, 148:458-472. 10.1016/j.cell.2012.01.010, 22265598.
6. Phillips-Cremins JE, Sauria MEG, Sanyal A, Gerasimova TI, Lajoie BR, Bell JSK, Ong C-T, Hookway TA, Guo C, Sun Y, Bland MJ, Wagstaff W, Dalton S, McDevitt TC, Sen R, Dekker J, Taylor J, Corces VG. Architectural protein subclasses shape 3D organization of genomes during lineage commitment. Cell 2013, 153:1281-1295. 10.1016/j.cell.2013.04.053, 23706625.
7. Naumova N, Imakaev M, Fudenberg G, Zhan Y, Lajoie BR, Mirny LA, Dekker J. Organization of the mitotic chromosome. Science 2013, 342:948-953. 10.1126/science.1236083, 24200812.
8. Kadauke S, Blobel GA. Mitotic bookmarking by transcription factors. Epigenetics Chromatin 2013, 6:6. 10.1186/1756-8935-6-6, 3621617, 23547918.
9. Follmer NE, Wani AH, Francis NJ. A Polycomb group protein is retained at specific sites on chromatin in mitosis. PLOS Genet 2012, 8:e1003135. 10.1371/journal.pgen.1003135, 3527277, 23284300.
10. Nagano T, Lubling Y, Stevens TJ, Schoenfelder S, Yaffe E, Dean W, Laue ED, Tanay A, Fraser P. Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. Nature 2013, 502:59-64. 10.1038/nature12593, 24067610.