A practical guide to the ICPL-ESIQuant software for ICPL-based quantitative proteomics

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1844, Issue 1 PART A, 2014, Pages 21-28

  Brunner, Achim ^a   Kellermann, Josef ^a   Lottspeich, Friedrich ^a  

^a MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

ICPL; Isotope coded protein label; Mass spectrometry; Protein quantification software; Quantitative proteomics

Indexed keywords

ARTICLE; DATA ANALYSIS SOFTWARE; INFORMATION PROCESSING; MASS SPECTROMETRY; MEASUREMENT ACCURACY; MICROCOMPUTER; PRIORITY JOURNAL; PROCESS DESIGN; PROTEOMICS; QUANTITATIVE ANALYSIS; SIGNAL NOISE RATIO;

COEFFICIENT OF VARIATION; CV; EXTRACTED ION CHROMATOGRAM; ICPL; ISOTOPE-CODED PROTEIN LABEL; LC; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PROTEIN QUANTIFICATION SOFTWARE; QUANTITATIVE PROTEOMICS; XIC;

COMPUTERS; PROTEOMICS; SOFTWARE;

EID: 84890806029     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2013.02.019     Document Type: Article

References (11)

1. N.H. Barkhudaryan, F.P. Sarukhanyan, J. Kellermann, and F. Lottspeich Calcineurin and μ-opioid receptors are involved in the molecular mechanisms of anti-diabetic effect of LVVYPW MeDeh CyrillicEe Cyrillic signTse Cyrillic signEe Cyrillic signhckaCyrillic small letter YA sign hayka FOR VERIFICATION pmehEe Cyrillic signEe Cyrillic sign 51 3 2011 33 42
2. A. Brunner, E.M. Keidel, D. Dosch, J. Kellermann, and F. Lottspeich ICPLQuant - a software for non-isobaric isotopic labeling proteomics Proteomics 10 2010 315 326
3. B. Domon, and R. Aebersold Options and considerations when selecting a quantitative proteomics strategy Nat. Biotechnol. 28 2010 710 721
4. M. Fleron, Y. Greffe, D. Musmeci, A.C. Massart, V. Hennequiere, G. Mazzucchelli, D. Waltregny, M.C. De Pauw-Gillet, V. Castronovo, E. De Pauw, and A. Turtoi Novel post-digest isotope coded protein labeling method for phospho- and glycoproteome analysis J. Proteomics 73 10 2010 1986 2005
5. A. Keller, J. Eng, N. Zhang, X.J. Li, and R. Aebersold A uniform proteomics MS/MS analysis platform utilizing open XML file formats Mol. Syst. Biol. 1 2005 2005
6. J. Kellermann ICPL - isotope-coded protein label Methods Mol. Biol. 424 2008 113 123
7. F. Lottspeich, J. Kellermann, and E. Keidel Molecular biology tools: proteomics techniques in biomarker discovery Scand. J. Clin. Lab. Invest. 70 Suppl. 242 2010 19 22
8. F.C. Nogueira, G. Palmisano, V. Schwammle, F.A. Campos, M.R. Larsen, G.B. Domont, and P. Roepstorff Performance of isobaric and isotopic labeling in quantitative plant proteomics J. Proteome Res. 11 2012 3046 3052
9. M.D. Papaioannou, M. Lagarrigue, C.E. Vejnar, A.D. Rolland, F. Kuhne, F. Aubry, O. Schaad, A. Fort, P. Descombes, M. Neerman-Arbez, F. Guillou, E.M. Zdobnov, C. Pineau, and S. Nef Loss of Dicer in Sertoli cells has a major impact on the testicular proteome of mice Mol. Cell Proteomics 10 2011 (p.M900587MCP200)
10. D.N. Perkins, D.J. Pappin, D.M. Creasy, and J.S. Cottrell Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 20 1999 3551 3567 (Pubitemid 30007252)
11. A. Schmidt, J. Kellermann, and F. Lottspeich A novel strategy for quantitative proteomics using isotope-coded protein labels Proteomics 5 2005 4 15 (Pubitemid 40189632)