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Volumn 22, Issue 1, 2014, Pages 79-87

Combined array CGH plus SNP genome analyses in a single assay for optimized clinical testing

(20)  Wiszniewska, Joanna a   Bi, Weimin a   Shaw, Chad a   Stankiewicz, Pawel a   Kang, Sung Hae L b   Pursley, Amber N a   Lalani, Seema a   Hixson, Patricia a   Gambin, Tomasz c   Tsai, Chun Hui d,e   Bock, Hans Georg f   Descartes, Maria g   Probst, Frank J a   Scaglia, Fernando a   Beaudet, Arthur L a   Lupski, James R a   Eng, Christine a   Wai Cheung, Sau a   Bacino, Carlos a   Patel, Ankita a  


Author keywords

absence of heterozygosity; array CGH; medically actionable variants; SNP; uniparental disomy

Indexed keywords

OLIGONUCLEOTIDE;

EID: 84890801002     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2013.77     Document Type: Article
Times cited : (106)

References (38)
  • 1
    • 80053549439 scopus 로고    scopus 로고
    • Clan genomics and the complex architecture of human disease
    • Lupski JR, Belmont JW, Boerwinkle E, Gibbs RA: Clan genomics and the complex architecture of human disease. Cell 2011; 147: 32-43.
    • (2011) Cell , vol.147 , pp. 32-43
    • Lupski, J.R.1    Belmont, J.W.2    Boerwinkle, E.3    Gibbs, R.A.4
  • 2
    • 77950461601 scopus 로고    scopus 로고
    • Origins and functional impact of copy number variation in the human genome
    • Conrad DF, Pinto D, Redon R et al: Origins and functional impact of copy number variation in the human genome. Nature 2010; 464: 704-712.
    • (2010) Nature , vol.464 , pp. 704-712
    • Conrad, D.F.1    Pinto, D.2    Redon, R.3
  • 3
    • 4444291843 scopus 로고    scopus 로고
    • Detection of large-scale variation in the human genome
    • Iafrate AJ, Feuk L, Rivera MN et al: Detection of large-scale variation in the human genome. Nat Genet 2004; 36: 949-951.
    • (2004) Nat Genet , vol.36 , pp. 949-951
    • Iafrate, A.J.1    Feuk, L.2    Rivera, M.N.3
  • 4
    • 84975804424 scopus 로고    scopus 로고
    • Mapping copy number variation by population-scale genome sequencing
    • Mills RE, Walter K, Stewart C et al: Mapping copy number variation by population-scale genome sequencing. Nature 2011; 470: 59-65.
    • (2011) Nature , vol.470 , pp. 59-65
    • Mills, R.E.1    Walter, K.2    Stewart, C.3
  • 5
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon R, Ishikawa S, Fitch KR et al: Global variation in copy number in the human genome. Nature 2006; 444: 444-454.
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1    Ishikawa, S.2    Fitch, K.R.3
  • 6
    • 3242808027 scopus 로고    scopus 로고
    • Large-scale copy number polymorphism in the human genome
    • Sebat J, Lakshmi B, Troge J et al: Large-scale copy number polymorphism in the human genome. Science 2004; 305: 525-528.
    • (2004) Science , vol.305 , pp. 525-528
    • Sebat, J.1    Lakshmi, B.2    Troge, J.3
  • 7
    • 22844451617 scopus 로고    scopus 로고
    • Fine-scale structural variation of the human genome
    • Tuzun E, Sharp AJ, Bailey JA et al: Fine-scale structural variation of the human genome. Nat Genet 2005; 37: 727-732.
    • (2005) Nat Genet , vol.37 , pp. 727-732
    • Tuzun, E.1    Sharp, A.J.2    Bailey, J.A.3
  • 8
    • 79959227100 scopus 로고    scopus 로고
    • Alu-specific microhomology-mediated deletion of the final exon of SPAST in three unrelated subjects with hereditary spastic paraplegia
    • Boone PM, Liu P, Zhang F et al: Alu-specific microhomology-mediated deletion of the final exon of SPAST in three unrelated subjects with hereditary spastic paraplegia. Genet Med 2011; 13: 582-592.
    • (2011) Genet Med , vol.13 , pp. 582-592
    • Boone, P.M.1    Liu, P.2    Zhang, F.3
  • 9
    • 39649124023 scopus 로고    scopus 로고
    • Array-based DNA diagnostics: Let the revolution begin
    • Beaudet AL, Belmont JW: Array-based DNA diagnostics: let the revolution begin. Annu Rev Med 2008; 59: 113-129.
    • (2008) Annu Rev Med , vol.59 , pp. 113-129
    • Beaudet, A.L.1    Belmont, J.W.2
  • 10
    • 34347361618 scopus 로고    scopus 로고
    • Copy number variations and clinical cytogenetic diagnosis of constitutional disorders
    • Lee C, Iafrate AJ, Brothman AR: Copy number variations and clinical cytogenetic diagnosis of constitutional disorders. Nat Genet 2007; 39(7 Suppl): S48-S54.
    • (2007) Nat Genet , vol.39 , Issue.7 SUPPL.
    • Lee, C.1    Iafrate, A.J.2    Brothman, A.R.3
  • 11
    • 77951749871 scopus 로고    scopus 로고
    • Copy number variation and human genome maps
    • McCarroll SA: Copy number variation and human genome maps. Nat Genet 2010; 42: 365-366.
    • (2010) Nat Genet , vol.42 , pp. 365-366
    • McCarroll, S.A.1
  • 12
    • 77954657070 scopus 로고    scopus 로고
    • Functional impact of global rare copy number variation in autism spectrum disorders
    • Pinto D, Pagnamenta AT, Klei L et al: Functional impact of global rare copy number variation in autism spectrum disorders. Nature 2010; 466: 368-372.
    • (2010) Nature , vol.466 , pp. 368-372
    • Pinto, D.1    Pagnamenta, A.T.2    Klei, L.3
  • 13
    • 34249680839 scopus 로고    scopus 로고
    • Use of array CGH in the evaluation of dysmorphology, malformations, developmental delay, and idiopathic mental retardation
    • Stankiewicz P, Beaudet AL: Use of array CGH in the evaluation of dysmorphology, malformations, developmental delay, and idiopathic mental retardation. Curr Opin Genet Dev 2007; 17: 182-192.
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 182-192
    • Stankiewicz, P.1    Beaudet, A.L.2
  • 14
    • 84866599675 scopus 로고    scopus 로고
    • Brain copy number variants and neuropsychiatric traits
    • Lupski JR: Brain copy number variants and neuropsychiatric traits. Biol Psychiatr 2012; 72: 617-619.
    • (2012) Biol Psychiatr , vol.72 , pp. 617-619
    • Lupski, J.R.1
  • 15
    • 77952032690 scopus 로고    scopus 로고
    • Consensus statement: Chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies
    • Miller DT, Adam MP, Aradhya S et al: Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies. Am J Hum Genet 2010; 86: 749-764.
    • (2010) Am J Hum Genet , vol.86 , pp. 749-764
    • Miller, D.T.1    Adam, M.P.2    Aradhya, S.3
  • 16
    • 78649559271 scopus 로고    scopus 로고
    • Detection of clinically relevant exonic copynumber changes by array CGH
    • Boone PM, Bacino CA, Shaw CA et al: Detection of clinically relevant exonic copynumber changes by array CGH. Hum Mutat 2010; 31: 1326-1342.
    • (2010) Hum Mutat , vol.31 , pp. 1326-1342
    • Boone, P.M.1    Bacino, C.A.2    Shaw, C.A.3
  • 17
    • 85027952885 scopus 로고    scopus 로고
    • Exon deletions of the EP300 and CREBBP genes in two children with Rubinstein-Taybi syndrome detected by aCGH
    • Tsai AC, Dossett CJ, Walton CS et al: Exon deletions of the EP300 and CREBBP genes in two children with Rubinstein-Taybi syndrome detected by aCGH. Eur J Hum Genet 2011; 19: 43-49.
    • (2011) Eur J Hum Genet , vol.19 , pp. 43-49
    • Tsai, A.C.1    Dossett, C.J.2    Walton, C.S.3
  • 18
    • 77951702768 scopus 로고    scopus 로고
    • Mechanisms of mosaicism, chimerism and uniparental disomy identified by single nucleotide polymorphism array analysis
    • Conlin LK, Thiel BD, Bonnemann CG et al: Mechanisms of mosaicism, chimerism and uniparental disomy identified by single nucleotide polymorphism array analysis. Hum Mol Genet 2010; 19: 1263-1275.
    • (2010) Hum Mol Genet , vol.19 , pp. 1263-1275
    • Conlin, L.K.1    Thiel, B.D.2    Bonnemann, C.G.3
  • 19
    • 83455246303 scopus 로고    scopus 로고
    • SNP array analysis in constitutional and cancer genome diagnostics-copy number variants, genotyping and quality control
    • de Leeuw N, Hehir-Kwa JY, Simons A et al: SNP array analysis in constitutional and cancer genome diagnostics-copy number variants, genotyping and quality control. Cytogenet Genome Res 2011; 135: 212-221.
    • (2011) Cytogenet Genome Res , vol.135 , pp. 212-221
    • De Leeuw, N.1    Hehir-Kwa, J.Y.2    Simons, A.3
  • 21
    • 22844445143 scopus 로고    scopus 로고
    • A rapid microarray based whole genome analysis for detection of uniparental disomy
    • Altug-Teber O, Dufke A, Poths S et al: A rapid microarray based whole genome analysis for detection of uniparental disomy. Hum Mutat 2005; 26: 153-159.
    • (2005) Hum Mutat , vol.26 , pp. 153-159
    • Altug-Teber, O.1    Dufke, A.2    Poths, S.3
  • 22
    • 79953321196 scopus 로고    scopus 로고
    • UPD detection using homozygosity profiling with a SNP genotyping microarray
    • Papenhausen P, Schwartz S, Risheg H et al: UPD detection using homozygosity profiling with a SNP genotyping microarray. Am J Med Genet A 2011; 155A: 757-768.
    • (2011) Am J Med Genet A , vol.155 A , pp. 757-768
    • Papenhausen, P.1    Schwartz, S.2    Risheg, H.3
  • 23
    • 0018939994 scopus 로고
    • A new genetic concept: Uniparental disomy and its potential effect, isodisomy
    • Engel E: A new genetic concept: uniparental disomy and its potential effect, isodisomy. Am J Med Genet 1980; 6: 137-143.
    • (1980) Am J Med Genet , vol.6 , pp. 137-143
    • Engel, E.1
  • 24
    • 0023897290 scopus 로고
    • Uniparental disomy as a mechanism for human genetic disease
    • Spence JE, Perciaccante RG, Greig GM et al: Uniparental disomy as a mechanism for human genetic disease. Am J Hum Genet 1988; 42: 217-226.
    • (1988) Am J Hum Genet , vol.42 , pp. 217-226
    • Spence, J.E.1    Perciaccante, R.G.2    Greig, G.M.3
  • 25
    • 0034096456 scopus 로고    scopus 로고
    • Somatic segregation errors predominantly contribute to the gain or loss of a paternal chromosome leading to uniparental disomy for chromosome 15
    • Robinson WP, Christian SL, Kuchinka BD et al: Somatic segregation errors predominantly contribute to the gain or loss of a paternal chromosome leading to uniparental disomy for chromosome 15. Clin Genet 2000; 57: 349-358.
    • (2000) Clin Genet , vol.57 , pp. 349-358
    • Robinson, W.P.1    Christian, S.L.2    Kuchinka, B.D.3
  • 26
    • 51849158675 scopus 로고    scopus 로고
    • Complex and segmental uniparental disomy updated
    • Kotzot D: Complex and segmental uniparental disomy updated. J Med Genet 2008; 45: 545-556.
    • (2008) J Med Genet , vol.45 , pp. 545-556
    • Kotzot, D.1
  • 27
    • 42149187072 scopus 로고    scopus 로고
    • Bacterial artificial chromosome-emulation oligonucleotide arrays for targeted clinical array-comparative genomic hybridization analyses
    • Ou Z, Kang SH, Shaw CA et al: Bacterial artificial chromosome-emulation oligonucleotide arrays for targeted clinical array-comparative genomic hybridization analyses. Genet Med 2008; 10: 278-289.
    • (2008) Genet Med , vol.10 , pp. 278-289
    • Ou, Z.1    Kang, S.H.2    Shaw, C.A.3
  • 28
    • 84872073998 scopus 로고    scopus 로고
    • Incidental copy-number variants identified by routine genome testing in a clinical population
    • Boone PM, Soens ZT, Campbell IM et al: Incidental copy-number variants identified by routine genome testing in a clinical population. Genet Med 2012; 15: 45-54.
    • (2012) Genet Med , vol.15 , pp. 45-54
    • Boone, P.M.1    Soens, Z.T.2    Campbell, I.M.3
  • 29
    • 79960812993 scopus 로고    scopus 로고
    • American College of Medical Genetics standards and guidelines for interpretation and reporting of postnatal constitutional copy number variants
    • Kearney HM, Thorland EC, Brown KK, Quintero-Rivera F, South ST: American College of Medical Genetics standards and guidelines for interpretation and reporting of postnatal constitutional copy number variants. Genet Med 2011; 13: 680-685.
    • (2011) Genet Med , vol.13 , pp. 680-685
    • Kearney, H.M.1    Thorland, E.C.2    Brown, K.K.3    Quintero-Rivera, F.4    South, S.T.5
  • 30
    • 84864879854 scopus 로고    scopus 로고
    • Diagnostic interpretation of array data using public databases and internet sources
    • de Leeuw N, Dijkhuizen T, Hehir-Kwa JY et al: Diagnostic interpretation of array data using public databases and internet sources. Hum Mutat 2012; 33: 930-940.
    • (2012) Hum Mutat , vol.33 , pp. 930-940
    • De Leeuw, N.1    Dijkhuizen, T.2    Hehir-Kwa, J.Y.3
  • 32
    • 84866498243 scopus 로고    scopus 로고
    • De novo interstitial duplication of 15q11.2-q13.1 with complex maternal uniparental trisomy for the 15q11-q13 region in a patient with Prader-Willi syndrome
    • Burrage LC, Person RE, Flores A et al: De novo interstitial duplication of 15q11.2-q13.1 with complex maternal uniparental trisomy for the 15q11-q13 region in a patient with Prader-Willi syndrome. Am J Med Genet A 2012; 158A: 2557-2563.
    • (2012) Am J Med Genet A , vol.158 A , pp. 2557-2563
    • Burrage, L.C.1    Person, R.E.2    Flores, A.3
  • 33
    • 82355181986 scopus 로고    scopus 로고
    • Genome-wide mapping of copy number variation in humans: Comparative analysis of high resolution array platforms
    • Haraksingh RR, Abyzov A, Gerstein M, Urban AE, Snyder M: Genome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms. PLoS One 2011; 6: e27859.
    • (2011) PLoS One , vol.6
    • Haraksingh, R.R.1    Abyzov, A.2    Gerstein, M.3    Urban, A.E.4    Snyder, M.5
  • 34
    • 84856005830 scopus 로고    scopus 로고
    • Pathogenic aberrations revealed exclusively by single nucleotide polymorphism (SNP) genotyping data in 5000 samples tested by molecular karyotyping
    • Bruno DL, White SM, Ganesamoorthy D et al: Pathogenic aberrations revealed exclusively by single nucleotide polymorphism (SNP) genotyping data in 5000 samples tested by molecular karyotyping. J Med Genet 2011; 48: 831-839.
    • (2011) J Med Genet , vol.48 , pp. 831-839
    • Bruno, D.L.1    White, S.M.2    Ganesamoorthy, D.3
  • 35
    • 84869235517 scopus 로고    scopus 로고
    • Phenotypic spectrum and genotype-phenotype correlations of NRXN1 exon deletions
    • Schaaf CP, Boone PM, Sampath S et al: Phenotypic spectrum and genotype-phenotype correlations of NRXN1 exon deletions. Eur J Hum Genet 2012; 20: 1240-1247.
    • (2012) Eur J Hum Genet , vol.20 , pp. 1240-1247
    • Schaaf, C.P.1    Boone, P.M.2    Sampath, S.3
  • 36
    • 24944480082 scopus 로고    scopus 로고
    • Molecular characterization of the spectrum of genomic deletions in the mismatch repair genes MSH2, MLH1, MSH6, and PMS2 responsible for hereditary nonpolyposis colorectal cancer (HNPCC)
    • van der Klift H, Wijnen J, Wagner A et al: Molecular characterization of the spectrum of genomic deletions in the mismatch repair genes MSH2, MLH1, MSH6, and PMS2 responsible for hereditary nonpolyposis colorectal cancer (HNPCC). Genes Chromosomes Cancer 2005; 44: 123-138.
    • (2005) Genes Chromosomes Cancer , vol.44 , pp. 123-138
    • Van Der Klift, H.1    Wijnen, J.2    Wagner, A.3
  • 37
    • 69549118484 scopus 로고    scopus 로고
    • Deletions in the VPS13B (COH1) gene as a cause of Cohen syndrome
    • Balikova I, Lehesjoki AE, de Ravel TJ et al: Deletions in the VPS13B (COH1) gene as a cause of Cohen syndrome. Hum Mutat 2009; 30: E845-E854.
    • (2009) Hum Mutat , vol.30
    • Balikova, I.1    Lehesjoki, A.E.2    De Ravel, T.J.3
  • 38
    • 84867884099 scopus 로고    scopus 로고
    • Clinical significance of large rearrangements in BRCA1 and BRCA2
    • Judkins T, Rosenthal E, Arnell C et al: Clinical significance of large rearrangements in BRCA1 and BRCA2. Cancer 2012; 118: 5210-5216.
    • (2012) Cancer , vol.118 , pp. 5210-5216
    • Judkins, T.1    Rosenthal, E.2    Arnell, C.3


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