-
1
-
-
77957118887
-
Conical intersection dynamics of the primary photoisomerization event in vision
-
Polli D, Altoe P, Weingart O, Spillane KM, Manzoni C, Brida D, Tomasello G, Orlandi G, Kukura P, Mathies RA, et al. Conical intersection dynamics of the primary photoisomerization event in vision. Nature 2010, 467:440-443.
-
(2010)
Nature
, vol.467
, pp. 440-443
-
-
Polli, D.1
Altoe, P.2
Weingart, O.3
Spillane, K.M.4
Manzoni, C.5
Brida, D.6
Tomasello, G.7
Orlandi, G.8
Kukura, P.9
Mathies, R.A.10
-
2
-
-
78650725840
-
Relaxation mechanisms of UV-photoexcited DNA and RNA nucleobases
-
Barbatti M, Aquino AJA, Szymczak JJ, Nachtigallová D, Hobza P, Lischka H. Relaxation mechanisms of UV-photoexcited DNA and RNA nucleobases. Proc Natl Acad Sci U S A 2010, 107:21453-21458.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 21453-21458
-
-
Barbatti, M.1
Aquino, A.J.A.2
Szymczak, J.J.3
Nachtigallová, D.4
Hobza, P.5
Lischka, H.6
-
3
-
-
77957748543
-
Unraveling a chemically enhanced photoswitch: bridged Azobenzene
-
Böckmann M, Doltsinis NL, Marx D. Unraveling a chemically enhanced photoswitch: bridged Azobenzene. Angew Chem 2010, 122:3454-3456.
-
(2010)
Angew Chem
, vol.122
, pp. 3454-3456
-
-
Böckmann, M.1
Doltsinis, N.L.2
Marx, D.3
-
4
-
-
1842502916
-
Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis isomerization of the chromophore in the protein
-
Groenhof G, Bouxin-Cademartory M, Hess B, deVisser SP, Berendsen HJC, Olivucci M, Mark AE, Robb MA. Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis isomerization of the chromophore in the protein. J Am Chem Soc 2004, 126:4228-4233.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 4228-4233
-
-
Groenhof, G.1
Bouxin-Cademartory, M.2
Hess, B.3
deVisser, S.P.4
Berendsen, H.J.C.5
Olivucci, M.6
Mark, A.E.7
Robb, M.A.8
-
5
-
-
84855513583
-
Electronically excited states and photodynamics: a continuing challenge
-
Plasser F, Barbatti M, Aquino A, Lischka H. Electronically excited states and photodynamics: a continuing challenge. Theor Chem Acc 2012, 131:1073.
-
(2012)
Theor Chem Acc
, vol.131
, pp. 1073
-
-
Plasser, F.1
Barbatti, M.2
Aquino, A.3
Lischka, H.4
-
6
-
-
3342939360
-
Beyond Born-Oppenheimer: molecular dynamics through a conical intersection
-
Worth GA, Cederbaum LS. Beyond Born-Oppenheimer: molecular dynamics through a conical intersection. Annu Rev Phys Chem 2004, 55:127-158.
-
(2004)
Annu Rev Phys Chem
, vol.55
, pp. 127-158
-
-
Worth, G.A.1
Cederbaum, L.S.2
-
7
-
-
13044304431
-
Molecular-dynamics with electronic-transitions
-
Tully JC. Molecular-dynamics with electronic-transitions. J Chem Phys 1990, 93:1061-1071.
-
(1990)
J Chem Phys
, vol.93
, pp. 1061-1071
-
-
Tully, J.C.1
-
8
-
-
80053997931
-
Nonadiabatic dynamics with trajectory surface hopping method
-
Barbatti M. Nonadiabatic dynamics with trajectory surface hopping method. WIREs: Comp Mol Sci 2011, 1:620-633.
-
(2011)
WIREs: Comp Mol Sci
, vol.1
, pp. 620-633
-
-
Barbatti, M.1
-
9
-
-
66049137239
-
Laser-field-induced surface-hopping method for the simulation and control of ultrafast photodynamics
-
Mitric R, Petersen J, Bonacic-Koutecky V. Laser-field-induced surface-hopping method for the simulation and control of ultrafast photodynamics. Phys Rev A 2009, 79:053416.
-
(2009)
Phys Rev A
, vol.79
, pp. 053416
-
-
Mitric, R.1
Petersen, J.2
Bonacic-Koutecky, V.3
-
10
-
-
34447622847
-
The on-the-fly surface-hopping program system Newton-X: application to ab initio simulation of the nonadiabatic photodynamics of benchmark systems
-
Barbatti M, Granucci G, Persico M, Ruckenbauer M, Vazdar M, Eckert-Maksić M, Lischka H. The on-the-fly surface-hopping program system Newton-X: application to ab initio simulation of the nonadiabatic photodynamics of benchmark systems. J Photochem Photobiol, A 2007, 190:228-240.
-
(2007)
J Photochem Photobiol, A
, vol.190
, pp. 228-240
-
-
Barbatti, M.1
Granucci, G.2
Persico, M.3
Ruckenbauer, M.4
Vazdar, M.5
Eckert-Maksić, M.6
Lischka, H.7
-
11
-
-
84890789358
-
-
NEWTON-X: a package for Newtonian dynamics close to the crossing seam. Available at:. (Accessed May 31, 2013).
-
Barbatti M, Granucci G, Ruckenbauer M, Plasser F, Pittner J, Persico M, Lischka H. NEWTON-X: a package for Newtonian dynamics close to the crossing seam. 2012. Available at: www.newtonx.org. (Accessed May 31, 2013).
-
(2012)
-
-
Barbatti, M.1
Granucci, G.2
Ruckenbauer, M.3
Plasser, F.4
Pittner, J.5
Persico, M.6
Lischka, H.7
-
12
-
-
84861901787
-
Spectrum simulation and decomposition with nuclear ensemble: formal derivation and application to benzene, furan and 2-phenylfuran
-
Crespo-Otero R, Barbatti M. Spectrum simulation and decomposition with nuclear ensemble: formal derivation and application to benzene, furan and 2-phenylfuran. Theor Chem Acc 2012, 131:1237.
-
(2012)
Theor Chem Acc
, vol.131
, pp. 1237
-
-
Crespo-Otero, R.1
Barbatti, M.2
-
13
-
-
84862567766
-
ONIOM approach for non-adiabatic on-the-fly molecular dynamics demonstrated for the backbone controlled Dewar valence isomerization
-
Fingerhut BP, Oesterling S, Haiser K, Heil K, Glas A, Schreier WJ, Zinth W, Carell T, de Vivie-Riedle R. ONIOM approach for non-adiabatic on-the-fly molecular dynamics demonstrated for the backbone controlled Dewar valence isomerization. J Chem Phys 2012, 136:204307-204310.
-
(2012)
J Chem Phys
, vol.136
, pp. 204307-204310
-
-
Fingerhut, B.P.1
Oesterling, S.2
Haiser, K.3
Heil, K.4
Glas, A.5
Schreier, W.J.6
Zinth, W.7
Carell, T.8
de Vivie-Riedle, R.9
-
14
-
-
84861919195
-
H-abstraction is more efficient than cis-trans isomerization in (4-methylcyclohexylidene) fluoromethane. An ab initio molecular dynamics study
-
Kinzel D, Gonzalez-Vazquez J, Gonzalez L. H-abstraction is more efficient than cis-trans isomerization in (4-methylcyclohexylidene) fluoromethane. An ab initio molecular dynamics study. Phys Chem Chem Phys 2012, 14:6241-6249.
-
(2012)
Phys Chem Chem Phys
, vol.14
, pp. 6241-6249
-
-
Kinzel, D.1
Gonzalez-Vazquez, J.2
Gonzalez, L.3
-
15
-
-
72449139076
-
Trajectory surface-hopping study of methane photodissociation dynamics
-
Lodriguito MD, Lendvay G, Schatz GC. Trajectory surface-hopping study of methane photodissociation dynamics. J Chem Phys 2009, 131:224320.
-
(2009)
J Chem Phys
, vol.131
, pp. 224320
-
-
Lodriguito, M.D.1
Lendvay, G.2
Schatz, G.C.3
-
16
-
-
0030126484
-
Quantum decoherence and the isotope effect in condensed phase nonadiabatic molecular dynamics simulations
-
Schwartz BJ, Bittner ER, Prezhdo OV, Rossky PJ. Quantum decoherence and the isotope effect in condensed phase nonadiabatic molecular dynamics simulations. J Chem Phys 1996, 104:5942-5955.
-
(1996)
J Chem Phys
, vol.104
, pp. 5942-5955
-
-
Schwartz, B.J.1
Bittner, E.R.2
Prezhdo, O.V.3
Rossky, P.J.4
-
17
-
-
8444240480
-
Coherent switching with decay of mixing: an improved treatment of electronic coherence for non-Born-Oppenheimer trajectories
-
Zhu CY, Nangia S, Jasper AW, Truhlar DG. Coherent switching with decay of mixing: an improved treatment of electronic coherence for non-Born-Oppenheimer trajectories. J Chem Phys 2004, 121:7658-7670.
-
(2004)
J Chem Phys
, vol.121
, pp. 7658-7670
-
-
Zhu, C.Y.1
Nangia, S.2
Jasper, A.W.3
Truhlar, D.G.4
-
18
-
-
34047252010
-
Critical appraisal of the fewest switches algorithm for surface hopping
-
Granucci G, Persico M. Critical appraisal of the fewest switches algorithm for surface hopping. J Chem Phys 2007, 126:134114-134111.
-
(2007)
J Chem Phys
, vol.126
, pp. 134114-134111
-
-
Granucci, G.1
Persico, M.2
-
19
-
-
79952115747
-
Including quantum decoherence in surface hopping
-
Granucci G, Persico M, Zoccante A. Including quantum decoherence in surface hopping. J Chem Phys 2010, 133:134111-134119.
-
(2010)
J Chem Phys
, vol.133
, pp. 134111-134119
-
-
Granucci, G.1
Persico, M.2
Zoccante, A.3
-
20
-
-
44749083639
-
Implementation of surface hopping molecular dynamics using semiempirical methods
-
Fabiano E, Keal TW, Thiel W. Implementation of surface hopping molecular dynamics using semiempirical methods. Chem Phys 2008, 349:334-347.
-
(2008)
Chem Phys
, vol.349
, pp. 334-347
-
-
Fabiano, E.1
Keal, T.W.2
Thiel, W.3
-
21
-
-
32544458965
-
Classical description of nonadiabatic quantum dynamics
-
Stock G, Thoss M. Classical description of nonadiabatic quantum dynamics. Adv Chem Phys 2005, 131:243-375.
-
(2005)
Adv Chem Phys
, vol.131
, pp. 243-375
-
-
Stock, G.1
Thoss, M.2
-
22
-
-
0035933398
-
Direct semiclassical simulation of photochemical processes with semiempirical wave functions
-
Granucci G, Persico M, Toniolo A. Direct semiclassical simulation of photochemical processes with semiempirical wave functions. J Chem Phys 2001, 114:10608-10615.
-
(2001)
J Chem Phys
, vol.114
, pp. 10608-10615
-
-
Granucci, G.1
Persico, M.2
Toniolo, A.3
-
23
-
-
84871254147
-
Surface hopping dynamics using a locally diabatic formalism: charge transfer in the ethylene dimer cation and excited state dynamics in the 2-pyridone dimer
-
Plasser F, Granucci G, Pittner J, Barbatti M, Persico M, Lischka H. Surface hopping dynamics using a locally diabatic formalism: charge transfer in the ethylene dimer cation and excited state dynamics in the 2-pyridone dimer. J Chem Phys 2012, 137:22A514-513.
-
(2012)
J Chem Phys
, vol.137
-
-
Plasser, F.1
Granucci, G.2
Pittner, J.3
Barbatti, M.4
Persico, M.5
Lischka, H.6
-
24
-
-
36449005418
-
Proton-transfer in solution-molecular-dynamics with quantum transitions
-
Hammes-Schiffer S, Tully JC. Proton-transfer in solution-molecular-dynamics with quantum transitions. J Chem Phys 1994, 101:4657-4667.
-
(1994)
J Chem Phys
, vol.101
, pp. 4657-4667
-
-
Hammes-Schiffer, S.1
Tully, J.C.2
-
25
-
-
59349094466
-
Optimization of mixed quantum-classical dynamics: time-derivative coupling terms and selected couplings
-
Pittner J, Lischka H, Barbatti M. Optimization of mixed quantum-classical dynamics: time-derivative coupling terms and selected couplings. Chem Phys 2009, 356:147-152.
-
(2009)
Chem Phys
, vol.356
, pp. 147-152
-
-
Pittner, J.1
Lischka, H.2
Barbatti, M.3
-
26
-
-
77954018078
-
Nonadiabatic excited-state dynamics with hybrid ab initio quantum-mechanical/molecular-mechanical methods: solvation of the pentadieniminium cation in apolar media
-
Ruckenbauer M, Barbatti M, Muller T, Lischka H. Nonadiabatic excited-state dynamics with hybrid ab initio quantum-mechanical/molecular-mechanical methods: solvation of the pentadieniminium cation in apolar media. J Phys Chem A 2010, 114:6757-6765.
-
(2010)
J Phys Chem A
, vol.114
, pp. 6757-6765
-
-
Ruckenbauer, M.1
Barbatti, M.2
Muller, T.3
Lischka, H.4
-
27
-
-
67650721755
-
Dynamics starting at a conical intersection: application to the photochemistry of pyrrole
-
Sellner B, Barbatti M, Lischka H. Dynamics starting at a conical intersection: application to the photochemistry of pyrrole. J Chem Phys 2009, 131:024312.
-
(2009)
J Chem Phys
, vol.131
, pp. 024312
-
-
Sellner, B.1
Barbatti, M.2
Lischka, H.3
-
28
-
-
36749110571
-
A computer-simulation method for the calculation of equilibrium-constants for the formation of physical clusters of molecules-application to small water clusters
-
Swope WC, Andersen HC, Berens PH, Wilson KR. A computer-simulation method for the calculation of equilibrium-constants for the formation of physical clusters of molecules-application to small water clusters. J Chem Phys 1982, 76:637-649.
-
(1982)
J Chem Phys
, vol.76
, pp. 637-649
-
-
Swope, W.C.1
Andersen, H.C.2
Berens, P.H.3
Wilson, K.R.4
-
29
-
-
0042711317
-
A modified multistep method for the numerical integration of ordinary differential equations
-
Butcher J. A modified multistep method for the numerical integration of ordinary differential equations. J Assoc Comp Mach 1965, 12:124-135.
-
(1965)
J Assoc Comp Mach
, vol.12
, pp. 124-135
-
-
Butcher, J.1
-
30
-
-
36749107785
-
Molecular-dynamics simulations at constant pressure and-or temperature
-
Andersen HC. Molecular-dynamics simulations at constant pressure and-or temperature. J Chem Phys 1980, 72:2384-2393.
-
(1980)
J Chem Phys
, vol.72
, pp. 2384-2393
-
-
Andersen, H.C.1
-
31
-
-
0035111450
-
High-level multireference methods in the quantum-chemistry program system COLUMBUS: analytic MR-CISD and MR-AQCC gradients and MR-AQCC-LRT for excited states, GUGA spin-orbit CI and parallel CI density
-
Lischka H, Shepard R, Pitzer RM, Shavitt I, Dallos M, Müller T, Szalay PG, Seth M, Kedziora GS, Yabushita S, et al. High-level multireference methods in the quantum-chemistry program system COLUMBUS: analytic MR-CISD and MR-AQCC gradients and MR-AQCC-LRT for excited states, GUGA spin-orbit CI and parallel CI density. Phys Chem Chem Phys 2001, 3:664-673.
-
(2001)
Phys Chem Chem Phys
, vol.3
, pp. 664-673
-
-
Lischka, H.1
Shepard, R.2
Pitzer, R.M.3
Shavitt, I.4
Dallos, M.5
Müller, T.6
Szalay, P.G.7
Seth, M.8
Kedziora, G.S.9
Yabushita, S.10
-
32
-
-
84890794941
-
-
COLUMBUS, an ab initio electronic structure program, release 7.0 Available at: (Accessed May 31, 2013).
-
Lischka H, Shepard R, Shavitt I, Pitzer RM, Dallos M, Müller T, Szalay PG, Brown FB, Ahlrichs R, Böhm HJ, et al. COLUMBUS, an ab initio electronic structure program, release 7.0 2012. Available at: www.univie.ac.at/columbus. (Accessed May 31, 2013).
-
(2012)
-
-
Lischka, H.1
Shepard, R.2
Shavitt, I.3
Pitzer, R.M.4
Dallos, M.5
Müller, T.6
Szalay, P.G.7
Brown, F.B.8
Ahlrichs, R.9
Böhm, H.J.10
-
33
-
-
4243539377
-
Electronic-structure calculations on workstation computers-the program system turbomole
-
Ahlrichs R, Bär M, Häser M, Horn H, Kölmel C. Electronic-structure calculations on workstation computers-the program system turbomole. Chem Phys Lett 1989, 162:165-169.
-
(1989)
Chem Phys Lett
, vol.162
, pp. 165-169
-
-
Ahlrichs, R.1
Bär, M.2
Häser, M.3
Horn, H.4
Kölmel, C.5
-
34
-
-
84885102778
-
Advances in electronic structure theory: GAMESS a decade later
-
Dykstra CE, Frenking G, Kim KS, Scuseria GE, eds. Amsterdam: Elsevier;
-
Gordon MS, Schmidt MW. Advances in electronic structure theory: GAMESS a decade later. In: Dykstra CE, Frenking G, Kim KS, Scuseria GE, eds. Theory and Applications of Computational Chemistry the first forty years. Amsterdam: Elsevier; 2005, 1167-1189.
-
(2005)
Theory and Applications of Computational Chemistry the first forty years
, pp. 1167-1189
-
-
Gordon, M.S.1
Schmidt, M.W.2
-
35
-
-
84890801377
-
-
Gaussian 03, Revision C.02. Gaussian, Inc., Wallingford CT .
-
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Montgomery JA Jr, Vreven T, Kudin KN, Burant JC, et al. Gaussian 03, Revision C.02. Gaussian, Inc., Wallingford CT 2004.
-
(2004)
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery, J.J.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
-
36
-
-
84988112508
-
An efficient Newton-like method for molecular mechanics energy minimization of large molecules
-
Ponder JW, Richards FM. An efficient Newton-like method for molecular mechanics energy minimization of large molecules. J Comput Chem 1987, 8:1016-1024.
-
(1987)
J Comput Chem
, vol.8
, pp. 1016-1024
-
-
Ponder, J.W.1
Richards, F.M.2
-
37
-
-
33748283200
-
The SCC-DFTB method and its application to biological systems
-
Elstner M. The SCC-DFTB method and its application to biological systems. Theor Chem Acc 2006, 116:316-325.
-
(2006)
Theor Chem Acc
, vol.116
, pp. 316-325
-
-
Elstner, M.1
-
38
-
-
0000230721
-
A combination of Kohn-Sham density functional theory and multi-reference configuration interaction methods
-
Grimme S, Waletzke M. A combination of Kohn-Sham density functional theory and multi-reference configuration interaction methods. J Chem Phys 1999, 111:5645-5655.
-
(1999)
J Chem Phys
, vol.111
, pp. 5645-5655
-
-
Grimme, S.1
Waletzke, M.2
-
39
-
-
67651166800
-
Excited-state diproton transfer in [2,2 '-Bipyridyl]-3,3 '-diol: the mechanism is sequential, not concerted
-
Plasser F, Barbatti M, Aquino AJA, Lischka H. Excited-state diproton transfer in [2, 2 '-Bipyridyl]-3, 3 '-diol: the mechanism is sequential, not concerted. J Phys Chem A 2009, 113:8490-8499.
-
(2009)
J Phys Chem A
, vol.113
, pp. 8490-8499
-
-
Plasser, F.1
Barbatti, M.2
Aquino, A.J.A.3
Lischka, H.4
-
40
-
-
84890802356
-
-
Program download, documentation, tutorial, and user-discussion forum can be accessed at the Newton-X website:
-
Program download, documentation, tutorial, and user-discussion forum can be accessed at the Newton-X website: www.newtonx.org.
-
-
-
|