Gene pools and the genetic architecture of domesticated cowpea

Plant Genome

Volumn 6, Issue 3, 2013, Pages 6-

  Huynh, Bao Lam ^a   Close, Timothy J ^a   Roberts, Philip A ^a   Hu, Zhiqiu ^a,b   Wanamaker, Steve ^a   Lucas, Mitchell R ^a   Chiulele, Rogerio ^c   Cissé, Ndiaga ^d   David, Antonio ^e   Hearne, Sarah ^f,g   Fatokun, Christian ^f   Diop, Ndeye N ^a,g   Ehlers, Jeffrey D ^a,h  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF ALBERTA   (Canada)

^c EDUARDO MONDLANE UNIVERSITY   (Mozambique)

^d CRODT ISRA Centre de recherche océanographique de Dakar Thiaroye Institut sénégalais de recherche agricole   (Senegal)

^e Ministério da Agricultura e Desenvolvimento Rural   (Angola)

^f INTERNATIONAL INSTITUTE OF TROPICAL AGRICULTURE   (Nigeria)

^g INTERNATIONAL MAIZE AND WHEAT IMPROVEMENT CENTER CIMMYT   (Mexico)

^h BILL AND MELINDA GATES FOUNDATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84890661625     PISSN: None     EISSN: 19403372     Source Type: Journal    
DOI: 10.3835/plantgenome2013.03.0005     Document Type: Article

References (27)

1. Bowcock, A.M., A. Ruizlinares, J. Tomfohrde, E. Minch, J.R. Kidd, and L.L. Cavallisforza. 1994. High-resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457. doi:10.1038/368455a0.
2. Chacón S, M.I., B. Pickersgill, and D.G. Debouck. 2005. Domestication patterns in common bean (Phaseolus vulgaris L.) and the origin of the Mesoamerican and Andean cultivated races. Theor. Appl. Genet. 110:432-444. doi:10.1007/s00122-004-1842-2.
3. Coulibaly, S., R.S. Pasquet, R. Papa, and P. Gepts. 2002. AFLP analysis of the phenetic organization and genetic diversity of Vigna unguiculata L. Walp. reveals extensive gene flow between wild and domesticated types. Theor. Appl. Genet. 104:358-366. doi:10.1007/s001220100740.
4. Earl, D., and B. vonHoldt. 2012. STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4:359-361. doi:10.1007/s12686-011-9548-7.
5. Ehlers, J.D., and K.W. Foster. 1993. Introgression of agronomic characters from exotic cowpea germplasm into blackeye bean. Field Crops Res. 35:43-50. doi:10.1016/0378-4290(93)90135-A.
6. Ehlers, J.D., and A.E. Hall. 1997. Cowpea (Vigna unguiculata L. Walp.). Field Crops Res. 53:187-204. doi:10.1016/S0378-4290(97)00031-2.
7. Evanno, G., S. Regnaut, and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol. Ecol. 14:2611-2620. doi:10.1111/j.1365-294X.2005.02553.x.
8. Excoffier, L., and H.E.L. Lischer. 2010. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10:564-567. doi:10.1111/j.1755-0998.2010.02847.x.
9. Fang, J., C.-C. Chao, P.A. Roberts, and J.D. Ehlers. 2007. Genetic diversity of cowpea [Vigna unguiculata (L.) Walp.] in four West African and USA breeding programs as determined by AFLP analysis. Genet. Resour. Crop Evol. 54:1197-1209. doi:10.1007/s10722-006-9101-9.
10. Faris, D.G. 1965. The origin and evolution of the cultivated forms of Vigna Sinensis. Can. J. Genet. Cytol. 7:433-452. doi:10.1139/g65-058.
11. Gepts, P. 1998. Origin and evolution of common bean: Past events and recent trends. HortScience 33:1124-1130.
12. Jakobsson, M., and N.A. Rosenberg. 2007. CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801-1806. doi:10.1093/bioinformatics/btm233.
13. Lucas, M.R., N.-N. Diop, S. Wanamaker, J.D. Ehlers, P.A. Roberts, and T.J. Close. 2011. Cowpea-soybean synteny clarified through an improved genetic map. Plant Gen. 4:218-225. doi:10.3835/plantgenome2011.06.0019.
14. Mahalakshmi, V., Q. Ng, M. Lawson, and R. Ortiz. 2007. Cowpea [Vigna unguiculata (L.) Walp.] core collection defined by geographical, agronomical and botanical descriptors. Plant Genet. Resour. 5:113-119. doi:10.1017/S1479262107837166.
15. Muchero, W., N.N. Diop, P.R. Bhat, R.D. Fenton, S. Wanamaker, M. Pottorff, S. Hearne, N. Cisse, C. Fatokun, J.D. Ehlers, P.A. Roberts, and T.J. Close. 2009. A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs. Proc. Natl. Acad. Sci. USA 106:18159-18164. doi:10.1073/pnas.0905886106.
16. Pant, K., K. Chandel, and B. Joshi. 1982. Analysis of diversity in Indian cowpea genetic resources. SABRAO J. 14:103-111.
17. Pasquet, R.S. 1999. Genetic relationships among subspecies of Vigna unguiculata (L.) Walp. based on allozyme variation. Theor. Appl. Genet. 98:1104-1119. doi:10.1007/s001220051174.
18. Pritchard, J.K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
19. Rawal, K.M. 1975. Natural hybridization among wild, weedy and cultivated Vigna unguiculata (L.) Walp. Euphytica 24:699-707. doi:10.1007/BF00132908.
20. Rosenberg, N.A. 2004. DISTRUCT: A program for the graphical display of population structure. Mol. Ecol. Notes 4:137-138. doi:10.1046/j.1471-8286.2003.00566.x.
21. Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
22. Steele, W. 1976. Cowpea, Vigna unguiculata (Leguminosae-Papillionatae). In: N. Simmonds, editor, Evolution of crop plants. Longman, London, UK.
23. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. doi:10.1093/molbev/msr121.
24. Tosti, N., and V. Negri. 2002. Efficiency of three PCR-based markers in assessing genetic variation among cowpea (Vigna unguiculata subsp. unguiculata) landraces. Genome 45:268-275. doi:10.1139/g01-146.
25. van Berloo, R. 2008. GGT 2.0: Versatile software for visualization and analysis of genetic data. J. Hered. 99:232-236. doi:10.1093/jhered/esm109.
26. Whit, W.C. 2007. Soul food as cultural creation. In: A. Bower, editor, African American foodways: Explorations of history and culture. University of Illinois Press, Urbana, IL. p. 45-58.
27. Xu, P., X. Wu, B. Wang, J. Luo, Y. Liu, J.D. Ehlers, T.J. Close, P.A. Roberts, Z. Lu, S. Wang, and G. Li. 2012. Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna unguiculata ssp. sesquipedialis) germplasm: Implications for domestication history and genome wide association studies. Heredity 109:34-40. doi:10.1038/hdy.2012.8.