메뉴 건너뛰기




Volumn 25, Issue 2, 2014, Pages

Patchiness of ion-exchanged mica revealed by DNA binding dynamics at short length scales

Author keywords

atomic force microscopy; DNA; mica; nickel; phase separation

Indexed keywords

BINDING MECHANISMS; END-TO-END DISTANCES; INORGANIC SURFACES; KINETIC TRAPPING; LENGTH DEPENDENCE; LINEAR FRAGMENTS; RELATIVE ABUNDANCE; THEORETICAL VALUES;

EID: 84890642444     PISSN: 09574484     EISSN: 13616528     Source Type: Journal    
DOI: 10.1088/0957-4484/25/2/025704     Document Type: Article
Times cited : (10)

References (33)
  • 1
    • 33748885827 scopus 로고    scopus 로고
    • A chlorite mineral surface actively drives the deposition of DNA molecules in stretched conformations
    • DOI 10.1088/0957-4484/17/15/047, PII S0957448406227867, 047
    • Antognozzi M, Wotherspoon A, Hayes J M, Miles M J, Szczelkun M D and Valdre G 2006 A chlorite mineral surface actively drives the deposition of DNA molecules in stretched conformations Nanotechnology 17 3897-902 (Pubitemid 44424431)
    • (2006) Nanotechnology , vol.17 , Issue.15 , pp. 3897-3902
    • Antognozzi, M.1    Wotherspoon, A.2    Hayes, J.M.3    Miles, M.J.4    Szczelkun, M.D.5    Valdre, G.6
  • 2
    • 40449107397 scopus 로고    scopus 로고
    • The effect of surface ions on water adsorption to mica
    • 10.1021/la702391m
    • Balmer T E, Christenson H K, Spencer N D and Heuberger M 2007 The effect of surface ions on water adsorption to mica Langmuir 24 1566-9
    • (2007) Langmuir , vol.24 , pp. 1566-1569
    • Balmer, T.E.1    Christenson, H.K.2    Spencer, N.D.3    Heuberger, M.4
  • 3
    • 0000740498 scopus 로고
    • Vapor adsorption on mica and silicon - Entropy effects, layering, and surface forces
    • 10.1021/j100187a040
    • Beaglehole D and Christenson H K 1992 Vapor adsorption on mica and silicon - entropy effects, layering, and surface forces J. Phys. Chem. 96 3395-403
    • (1992) J. Phys. Chem. , vol.96 , pp. 3395-3403
    • Beaglehole, D.1    Christenson, H.K.2
  • 4
    • 0024734216 scopus 로고
    • Adsorption of carbon dioxide on mica surfaces
    • 10.1021/la00089a005
    • Bhattacharyya K G 1989 Adsorption of carbon dioxide on mica surfaces Langmuir 5 1155-62
    • (1989) Langmuir , vol.5 , pp. 1155-1162
    • Bhattacharyya, K.G.1
  • 5
    • 78149240402 scopus 로고    scopus 로고
    • Atomic force microscopy of DNA at high humidity: Irreversible conformational switching of supercoiled molecules
    • 10.1039/c0cp01347a 1463-9076
    • Billingsley D J, Kirkham J, Bonass W A and Thomson N H 2010 Atomic force microscopy of DNA at high humidity: irreversible conformational switching of supercoiled molecules Phys. Chem. Chem. Phys. 12 14727-34
    • (2010) Phys. Chem. Chem. Phys. , vol.12 , pp. 14727-14734
    • Billingsley, D.J.1    Kirkham, J.2    Bonass, W.A.3    Thomson, N.H.4
  • 6
    • 0028071373 scopus 로고
    • Entropic elasticity of lambda-phage DNA
    • 10.1126/science.8079175
    • Bustamante C, Marko J F, Siggia E D and Smith S 1994 Entropic elasticity of lambda-phage DNA Science 265 1599-600
    • (1994) Science , vol.265 , pp. 1599-1600
    • Bustamante, C.1    Marko, J.F.2    Siggia, E.D.3    Smith, S.4
  • 8
    • 0032140985 scopus 로고    scopus 로고
    • Atomic force microscopy evidence for K+ domains on freshly cleaved mica
    • 10.1016/S0039-6028(98)00409-9 0039-6028
    • Campbell P A, Sinnamon L J, Thompson C E and Walmsley D G 1998 Atomic force microscopy evidence for K+ domains on freshly cleaved mica Surf. Sci. 410 768-72
    • (1998) Surf. Sci. , vol.410 , pp. 768-772
    • Campbell, P.A.1    Sinnamon, L.J.2    Thompson, C.E.3    Walmsley, D.G.4
  • 9
    • 0022025512 scopus 로고
    • Capillary condensation in systems of immiscible liquids
    • DOI 10.1016/0021-9797(85)90028-1
    • Christenson H K 1985 Capillary condensation in systems of immiscible liquids J. Colloid Interface Sci. 104 234-49 (Pubitemid 15539565)
    • (1985) Journal of Colloid and Interface Science , vol.104 , Issue.1 , pp. 234-249
    • Christenson Hugo, K.1
  • 10
    • 33751385277 scopus 로고
    • Adhesion and surface energy of mica in air and water
    • 10.1021/j100148a032
    • Christenson H K 1993 Adhesion and surface energy of mica in air and water J. Phys. Chem. 97 12034-41
    • (1993) J. Phys. Chem. , vol.97 , pp. 12034-12041
    • Christenson, H.K.1
  • 11
    • 0023364247 scopus 로고
    • Growth of ionic crystallites on exposed surfaces
    • 10.1016/0021-9797(87)90420-6
    • Christenson H K and Israelachvili J N 1987 Growth of ionic crystallites on exposed surfaces J. Colloid Interface Sci. 117 576-7
    • (1987) J. Colloid Interface Sci. , vol.117 , pp. 576-577
    • Christenson, H.K.1    Israelachvili, J.N.2
  • 12
    • 84884179095 scopus 로고    scopus 로고
    • Self-assembly of 50 bp poly(dA) ṡ poly(dT) DNA on highly oriented pyrolytic graphite via atomic force microscopy observation and molecular dynamics simulation
    • 10.1063/1.4818595 085102
    • Doi K, Takeuchi H, Nii R, Akamatsu S, Kakizaki T and Kawano S 2013 Self-assembly of 50 bp poly(dA) ṡ poly(dT) DNA on highly oriented pyrolytic graphite via atomic force microscopy observation and molecular dynamics simulation J. Chem. Phys. 139 085102
    • (2013) J. Chem. Phys. , vol.139
    • Doi, K.1    Takeuchi, H.2    Nii, R.3    Akamatsu, S.4    Kakizaki, T.5    Kawano, S.6
  • 13
    • 33947474324 scopus 로고
    • The ion-exchange properties of muscovite mica
    • 10.1021/j150556a033
    • Gaines G L 1957 The ion-exchange properties of muscovite mica J. Phys. Chem. 61 1408-13
    • (1957) J. Phys. Chem. , vol.61 , pp. 1408-1413
    • Gaines, G.L.1
  • 14
    • 0017494807 scopus 로고
    • Thermal-conductivity of mica at low-temperatures
    • 10.1007/BF00540978 0022-2461
    • Gray A S and Uher C 1977 Thermal-conductivity of mica at low-temperatures J. Mater. Sci. 12 959-65
    • (1977) J. Mater. Sci. , vol.12 , pp. 959-965
    • Gray, A.S.1    Uher, C.2
  • 15
    • 0342338458 scopus 로고
    • The electric strength of mica and its variation with temperature
    • 0367-7559 1
    • Hackett W and Thomas A M 1941 The electric strength of mica and its variation with temperature J. Inst. Electr. Eng. 1 88 295-303
    • (1941) J. Inst. Electr. Eng. , vol.88 , pp. 295-303
    • Hackett, W.1    Thomas, A.M.2
  • 16
    • 0034743149 scopus 로고    scopus 로고
    • Surface biology of DNA by atomic force microscopy
    • DOI 10.1146/annurev.physchem.52.1.71
    • Hansma H G 2001 Surface biology of DNA by atomic force microscopy Annu. Rev. Phys. Chem. 52 71-92 (Pubitemid 33655117)
    • (2001) Annual Review of Physical Chemistry , vol.52 , pp. 71-92
    • Hansma, H.G.1
  • 17
    • 0029863919 scopus 로고    scopus 로고
    • DNA binding to mica correlates with cationic radius: Assay by atomic force microscopy
    • Hansma H G and Laney D E 1996 DNA binding to mica correlates with cationic radius: assay by atomic force microscopy Biophys. J. 70 1933-9 (Pubitemid 26103965)
    • (1996) Biophysical Journal , vol.70 , Issue.4 , pp. 1933-1939
    • Hansma, H.G.1    Laney, D.E.2
  • 19
    • 79151475560 scopus 로고    scopus 로고
    • Localized nanoscopic surface measurements of nickel-modified mica for single-molecule DNA sequence sampling
    • 10.1021/am100697z
    • Hsueh C, Chen H, Gimzewski J K, Reed J and Abdel-Fattah T M 2001 Localized nanoscopic surface measurements of nickel-modified mica for single-molecule DNA sequence sampling ACS Appl. Mater. Interfaces 2 3249-56
    • (2001) ACS Appl. Mater. Interfaces , vol.2 , pp. 3249-3256
    • Hsueh, C.1    Chen, H.2    Gimzewski, J.K.3    Reed, J.4    Abdel-Fattah, T.M.5
  • 20
    • 77955528815 scopus 로고    scopus 로고
    • Visualization of ion distribution at the mica electrolyte interface
    • 10.1021/la1011378
    • Loh S-H and Jarvis S P 2010 Visualization of ion distribution at the mica electrolyte interface Langmuir 26 9176-8
    • (2010) Langmuir , vol.26 , pp. 9176-9178
    • Loh, S.-H.1    Jarvis, S.P.2
  • 21
    • 0000120855 scopus 로고    scopus 로고
    • Icelike water monolayer adsorbed on mica at room temperature
    • Miranda P B, Xu L, Shen Y R and Salmeron M 1998 Icelike water monolayer adsorbed on mica at room temperature Phys. Rev. Lett. 81 5876-9 (Pubitemid 128628283)
    • (1998) Physical Review Letters , vol.81 , Issue.26 , pp. 5876-5879
    • Miranda, P.B.1    Xu, L.2    Shen, Y.R.3    Salmeron, M.4
  • 22
    • 0002611356 scopus 로고
    • Electric dipoles on clean mica surfaces
    • 10.1016/0039-6028(69)90044-2 0039-6028
    • Muller K and Chang C C 1969 Electric dipoles on clean mica surfaces Surf. Sci. 14 39-51
    • (1969) Surf. Sci. , vol.14 , pp. 39-51
    • Muller, K.1    Chang, C.C.2
  • 23
    • 0028758166 scopus 로고
    • Molecular-scale structure of the cation modified muscovite mica basal-plane
    • 10.1021/la00024a028
    • Nishimura S, Biggs S, Scales P J, Healy T W, Tsunematsu K and Tateyama T 1994 Molecular-scale structure of the cation modified muscovite mica basal-plane Langmuir 10 4554-9
    • (1994) Langmuir , vol.10 , pp. 4554-4559
    • Nishimura, S.1    Biggs, S.2    Scales, P.J.3    Healy, T.W.4    Tsunematsu, K.5    Tateyama, T.6
  • 24
    • 0013444854 scopus 로고
    • DLVO and hydration forces between mica surfaces in Li+, Na+, K+, and Cs+ electrolyte solutions: A correlation of double-layer and hydration forces with surface cation exchange properties
    • 10.1016/0021-9797(81)90348-9
    • Pashley R M 1981 DLVO and hydration forces between mica surfaces in Li+, Na+, K+, and Cs+ electrolyte solutions: a correlation of double-layer and hydration forces with surface cation exchange properties J. Colloid Interface Sci. 83 531-46
    • (1981) J. Colloid Interface Sci. , vol.83 , pp. 531-546
    • Pashley, R.M.1
  • 25
    • 33746588552 scopus 로고    scopus 로고
    • Anionic polyelectrolyte adsorption on mica mediated by multivalent cations: A solution to DNA imaging by atomic force microscopy under high ionic strengths
    • DOI 10.1021/la053387y
    • Pastre D, Hamon L, Landousy F, Sorel I, David M O, Zozime A, Le Cam E and Pietrement O 2006 Anionic polyelectrolyte adsorption on mica mediated by multivalent cations: a solution to DNA imaging by atomic force microscopy under high ionic strengths Langmuir 22 6651-60 (Pubitemid 44146901)
    • (2006) Langmuir , vol.22 , Issue.15 , pp. 6651-6660
    • Pastre, D.1    Hamon, L.2    Landousy, F.3    Sorel, I.4    David, M.-O.5    Zozime, A.6    Le Cam, E.7    Pietrement, O.8
  • 27
    • 12144249124 scopus 로고    scopus 로고
    • Study of the DNA/ethidium bromide interactions on mica surface by atomic force microscope: Influence of the surface friction
    • DOI 10.1002/bip.20185
    • Pastre D, Pietrement O, Zozime A and Le Cam E 2005 Study of the DNA/ethidium bromide interactions on mica surface by atomic force microscope: influence of the surface friction Biopolymers 77 53-62 (Pubitemid 40110950)
    • (2005) Biopolymers , vol.77 , Issue.1 , pp. 53-62
    • Pastre, D.1    Pietrement, O.2    Zozime, A.3    Le Cam, E.4
  • 28
    • 0030596081 scopus 로고    scopus 로고
    • Scanning force microscopy of DNA deposited onto mica: Equilibration versus kinetic trapping studied by statistical polymer chain analysis
    • DOI 10.1006/jmbi.1996.0687
    • Rivetti C, Guthold M and Bustamante C 1996 Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis J. Mol. Biol. 264 919-32 (Pubitemid 27019483)
    • (1996) Journal of Molecular Biology , vol.264 , Issue.5 , pp. 919-932
    • Rivetti, C.1    Guthold, M.2    Bustamante, C.3
  • 29
    • 0346325754 scopus 로고    scopus 로고
    • Single DNA molecule analysis of transcription complexes
    • DOI 10.1016/S0076-6879(03)71003-9
    • Rivetti C and Guthold M 2003 Single DNA molecule analysis of transcription complexes Methods Enzymol. 371 34-50 (Pubitemid 37542719)
    • (2003) Methods in Enzymology , vol.371 , pp. 34-50
    • Rivetti, C.1    Guthold, M.2
  • 30
    • 33748600676 scopus 로고    scopus 로고
    • Simple model for DNA adsorption onto a mica surface in 1:1 and 2:1 electrolyte solutions
    • DOI 10.1021/la060356+
    • Sushko M L, Shluger A L and Rivetti C 2006 Simple model for DNA adsorption onto a mica surface in 1:1 and 2:1 electrolyte solutions Langmuir 22 7678-88 (Pubitemid 44376334)
    • (2006) Langmuir , vol.22 , Issue.18 , pp. 7678-7688
    • Sushko, M.L.1    Shluger, A.L.2    Rivetti, C.3
  • 31
    • 0036354825 scopus 로고    scopus 로고
    • A direct measurement of the ion-exchange capacity of muscovite mica using a Mettler ultramicrobalance
    • DOI 10.1006/jcis.2001.7984
    • Terashima H 2002 A direct measurement of the ion-exchange capacity of muscovite mica using a mettler ultramicrobalance J. Colloid Interface Sci. 245 81-5 (Pubitemid 34953369)
    • (2002) Journal of Colloid and Interface Science , vol.245 , Issue.1 , pp. 81-85
    • Terashima, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.