Localized nanoscopic surface measurements of nickel-modified Mica for single-molecule DNA sequence sampling

ACS Applied Materials and Interfaces

Volumn 2, Issue 11, 2010, Pages 3249-3256

  Hsueh, Carlin ^a   Chen, Haijian ^b   Gimzewski, James K ^a,c,e   Reed, Jason ^c   Abdel Fattah, Tarek M ^d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Dept of Economics and Thomas Jefferson Program in Public Policy at the College of William and Mary   (United States)

^c CALIFORNIA NANOSYSTEMS INSTITUTE   (United States)

^d CHRISTOPHER NEWPORT UNIVERSITY   (United States)

^e NATIONAL INSTITUTE FOR MATERIALS SCIENCE   (Japan)

Author keywords

AFM and surface analysis; single molecule DNA sequencing; surface modified mica; ToF SIMS

Indexed keywords

AFM; AFM AND SURFACE ANALYSIS; BINDING AFFINITIES; CLEAVAGE PLANE; DNA BINDING; DNA MOLECULES; DNA NANOSTRUCTURES; DOUBLE HELIX; IN-SITU; MICA SUBSTRATES; MUSCOVITE MICA; NANO SCALE; NEUTRAL PH; NUCLEOTIDE SEQUENCES; PHYSICOCHEMICAL PROPERTY; PHYSIOLOGICAL PH RANGE; ROOT MEAN SQUARE ROUGHNESS; SINGLE-MOLECULE; SURFACE-MODIFIED MICA; THERMODYNAMIC SIMULATIONS; TOF SIMS; ULTRAFLAT;

ADSORPTION; ATOMIC FORCE MICROSCOPY; BINDING ENERGY; CAPILLARITY; DESORPTION; DNA; DNA SEQUENCES; MICA; MOLECULES; PH EFFECTS; SECONDARY ION MASS SPECTROMETRY; SILICATE MINERALS; SURFACE ANALYSIS; SURFACE CHEMISTRY; SURFACE MEASUREMENT;

GENE ENCODING;

ALUMINUM SILICATE; DNA; MICA; NICKEL;

ARTICLE; CHEMISTRY; DNA SEQUENCE; METHODOLOGY; NANOTECHNOLOGY; PH; SURFACE PROPERTY; THERMODYNAMICS;

ALUMINUM SILICATES; DNA; HYDROGEN-ION CONCENTRATION; NANOTECHNOLOGY; NICKEL; SEQUENCE ANALYSIS, DNA; SURFACE PROPERTIES; THERMODYNAMICS;

EID: 79151475560     PISSN: 19448244     EISSN: 19448252     Source Type: Journal    
DOI: 10.1021/am100697z     Document Type: Article

References (22)

1. Hansma, H. G. and Laney, D. E. Biophys. J. 1996, 70, 1933-1939
2. Guthold, M., Zhu, X. S., Rivetti, C., Yang, G. L., Thomson, N. H., Kasas, S., Hansma, H. G., Smith, B., Hansma, P. K., and Bustamante, C. Biophys. J. 1999, 77, 2284-2294
3. McMaster, T. J., Miles, M. J., Shewry, P. R., and Tatham, A. S. Langmuir 2000, 16, 1463-1468
4. Pietrement, O., Pastre, D., Fusil, S., Jeusset, J., David, M. O., Landousy, F., Hamon, L., Zozime, A., and Le Cam, E. Langmuir 2003, 19, 2536-2539
5. Sushko, M. L., Shluger, A. L., and Rivetti, C. Langmuir 2006, 22, 7678-7688
6. Pastre, D., Hamon, L., Landousy, F., Sorel, I., David, M. O., Zozime, A., Le Cam, E., and Pietrement, O. Langmuir 2006, 22, 6651-6660
7. Cheng, H., Zhang, K., Libera, J. A., de la Cruz, M. O., and Bedzyk, M. J. Biophys. J. 2006, 90, 1164-1174
8. Pastre, D., Pietrement, O., Fusil, P., Landousy, F., Jeusset, J., David, M. O., Hamon, C., Le Cam, E., and Zozime, A. Biophys. J. 2003, 85, 2507-2518
9. Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y. J., Chen, Z. T., Dewell, S. B., Du, L., Fierro, J. M., Gomes, X. V., Godwin, B. C., He, W., Helgesen, S., Ho, C. H., Irzyk, G. P., Jando, S. C., Alenquer, M. L. I., Jarvie, T. P., Jirage, K. B., Kim, J. B., Knight, J. R., Lanza, J. R., Leamon, J. H., Lefkowitz, S. M., Lei, M., Li, J., Lohman, K. L., Lu, H., Makhijani, V. B., McDade, K. E., McKenna, M. P., Myers, E. W., Nickerson, E., Nobile, J. R., Plant, R., Puc, B. P., Ronan, M. T., Roth, G. T., Sarkis, G. J., Simons, J. F., Simpson, J. W., Srinivasan, M., Tartaro, K. R., Tomasz, A., Vogt, K. A., Volkmer, G. A., Wang, S. H., Wang, Y., Weiner, M. P., Yu, P. G., Begley, R. F., and Rothberg, J. M. Nature 2005, 437, 376-380
10. Holt, R. A. and Jones, S. J. M. Genome Res. 2008, 18, 839-846
11. Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X. C., Stern, D., Winkler, J., Lockhart, D. J., Morris, M. S., and Fodor, S. P. A. Science 1996, 274, 610-614
12. Oshannessy, D. J., Brighamburke, M., and Peck, K. Anal. Biochem. 1992, 205, 132-136
13. Reed, J., Hsueh, C., Mishra, B., and Gimzewski, J. K. Nanotechnology 2008, 19
14. Pashley, R. M. and Quirk, J. P. Colloids Surf. 1984, 9, 1-17
15. Pashley, R. M. and Israelachvili, J. N. J. Colloid Interface Sci. 1984, 97, 446-455
16. Burgess, J. Metal ions in solution; Halsted Press: New York, 1978; p 481.
17. Reed, J., Mishra, B., Pittenger, B., Magonov, S., Troke, J., Teitell, M. A., and Gimzewski, J. K. Nanotechnology 2007, 18 044032 (15 pp)
18. Pingoud, A., Fuxreiter, M., Pingoud, V., and Wende, W. Cell. Mol. Life Sci. 2005, 62, 685-707
19. Radoslovich, E. W. Acta Crystallogr. 1960, 13, 919-932
20. Puigdomenech, I. Abstr. Pap. Am. Chem. Soc. 2000, 219, 248-IEC
21. Puigdomenech, I. INPUT, SED, and PREDOM: Computer programs drawing equilibrium diagrams; TRITA-OOK-3010; Department of Inorganic Chemistry, Royal Institute of Technology: Stockholm, Sweden, 1983; p 12 pp.
22. Jing, J. P., Reed, J., Huang, J., Hu, X. H., Clarke, V., Edington, J., Housman, D., Anantharaman, T. S., Huff, E. J., Mishra, B., Porter, B., Shenker, A., Wolfson, E., Hiort, C., Kantor, R., Aston, C., and Schwartz, D. C. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 8046-8051