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Volumn 9, Issue 2, 2013, Pages 431-448

Veillonella, Firmicutes: Microbes disguised as Gram negatives

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM LIPOPOLYSACCHARIDE; PROTEOME; RNA 16S;

EID: 84890614712     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.2981345     Document Type: Article
Times cited : (49)

References (31)
  • 1
    • 0021780723 scopus 로고
    • The veillonellae: Gram-negative cocci with a unique physiology
    • [doi:10.1146/annurev.mi.39.100185.001135] [pmid:3904599]
    • Delwiche EA, Pestka JJ, Tortorello ML. The veillonellae: gram-negative cocci with a unique physiology. Annu Rev Microbiol 1985; 39:175-193. [doi:10.1146/annurev.mi.39.100185.001135] [pmid:3904599]
    • (1985) Annu Rev Microbiol , vol.39 , pp. 175-193
    • Delwiche, E.A.1    Pestka, J.J.2    Tortorello, M.L.3
  • 2
    • 33646086251 scopus 로고    scopus 로고
    • Molecular Characterization of Subject-Specific Oral Microflora during Initial Colonization of Enamel
    • [doi:10.1128/AEM.72.4.2837-2848.2006] [pmid:16597990]
    • Diaz PI, Chalmers NI, Rickard AH, Kong C, Milburn CL, Palmer RJ, Kolenbrander PE. Molecular Characterization of Subject-Specific Oral Microflora during Initial Colonization of Enamel. Appl Environ Microbiol 2006; 72:2837-2848. [doi:10.1128/AEM.72.4.2837-2848.2006] [pmid:16597990]
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2837-2848
    • Diaz, P.I.1    Chalmers, N.I.2    Rickard, A.H.3    Kong, C.4    Milburn, C.L.5    Palmer, R.J.6    Kolenbrander, P.E.7
  • 3
    • 27744573022 scopus 로고    scopus 로고
    • Defining the Normal Bacterial Flora of the Oral Cavity
    • [doi:10.1128/JCM.43.11.5721-5732.2005] [pmid:16272510]
    • Aas JA, Paster BJ, Stokes LN, Olsen I, Dewhirst FE. Defining the Normal Bacterial Flora of the Oral Cavity. J Clin Microbiol 2005; 43:5721-5732. [doi:10.1128/JCM.43.11.5721-5732.2005] [pmid:16272510]
    • (2005) J Clin Microbiol , vol.43 , pp. 5721-5732
    • Aas, J.A.1    Paster, B.J.2    Stokes, L.N.3    Olsen, I.4    Dewhirst, F.E.5
  • 4
    • 0141673379 scopus 로고    scopus 로고
    • Distribution of selected bacterial species on intraoral surfaces
    • [doi:10.1034/j.1600-051X.2003.00376.x] [pmid:12834503]
    • Mager DL, Ximenez-Fyvie LA, Haffajee AD, Socransky SS. Distribution of selected bacterial species on intraoral surfaces. J Clin Periodontol 2003; 30:644-654. [doi:10.1034/j.1600-051X.2003.00376.x] [pmid:12834503]
    • (2003) J Clin Periodontol , vol.30 , pp. 644-654
    • Mager, D.L.1    Ximenez-Fyvie, L.A.2    Haffajee, A.D.3    Socransky, S.S.4
  • 5
    • 79952076532 scopus 로고    scopus 로고
    • Use of 16S ribosomal RNA gene analyses to characterize the bacterial signature associated with poor oral health in West Virginia
    • [doi:10.1186/1472-6831-11-7] [pmid:21362199]
    • Olson JC, Cuff CF, Lukomski S, Lukomska E, Canizales Y, Wu B, Crout RJ, Thomas JG, McNeil DW, Weyant RJ, et al. Use of 16S ribosomal RNA gene analyses to characterize the bacterial signature associated with poor oral health in West Virginia. BMC Oral Health 2011; 11:7. [doi:10.1186/1472-6831-11-7] [pmid:21362199]
    • (2011) BMC Oral Health , vol.11 , pp. 7
    • Olson, J.C.1    Cuff, C.F.2    Lukomski, S.3    Lukomska, E.4    Canizales, Y.5    Wu, B.6    Crout, R.J.7    Thomas, J.G.8    McNeil, D.W.9    Weyant, R.J.10
  • 6
    • 57349084107 scopus 로고    scopus 로고
    • Characterization of a Streptococcus sp.-Veillonella sp. Community Micromanipulated from Dental Plaque
    • [doi:10.1128/JB.00983-08] [pmid:18805978]
    • Chalmers NI, Palmer RJ, Cisar JO, Kolenbrander PE. Characterization of a Streptococcus sp.-Veillonella sp. Community Micromanipulated from Dental Plaque. J Bacteriol 2008; 190:8145-8154. [doi:10.1128/JB.00983-08] [pmid:18805978]
    • (2008) J Bacteriol , vol.190 , pp. 8145-8154
    • Chalmers, N.I.1    Palmer, R.J.2    Cisar, J.O.3    Kolenbrander, P.E.4
  • 7
    • 76149087423 scopus 로고    scopus 로고
    • Diversity of Veillonella spp. from subgingival plaque by polyphasic approach
    • [doi:10.1111/j.1600-0463.2009.02584.x] [pmid:20132189]
    • Leuckfeld I, Paster BJ, Kristoffersen AK, Olsen I. Diversity of Veillonella spp. from subgingival plaque by polyphasic approach. APMIS 2010; 118:230-242. [doi:10.1111/j.1600-0463.2009.02584.x] [pmid:20132189]
    • (2010) APMIS , vol.118 , pp. 230-242
    • Leuckfeld, I.1    Paster, B.J.2    Kristoffersen, A.K.3    Olsen, I.4
  • 9
    • 84874005935 scopus 로고    scopus 로고
    • Gut microbiota in children with type I diabetes differs from that in healthy children: A case-control study
    • [doi:10.1186/1741-7015-11-46] [pmid:23433344]
    • Murri M, Leiva I, Gomez-Zumaquero JM, Tinahones FJ, Cardona F, Soriguer F, Quepo-Ortuño MI. Gut microbiota in children with type I diabetes differs from that in healthy children: a case-control study. BMC Med 2013; 11:46. [doi:10.1186/1741-7015-11-46] [pmid:23433344]
    • (2013) BMC Med , vol.11 , pp. 46
    • Murri, M.1    Leiva, I.2    Gomez-Zumaquero, J.M.3    Tinahones, F.J.4    Cardona, F.5    Soriguer, F.6    Quepo-Ortuño, M.I.7
  • 10
    • 0005372734 scopus 로고
    • The genus Veillonella
    • in: H.G. Balows, M. Trüper, W. Dworkin, W. Harder, K.H. Schleifer (Eds.), (2nd ed.), Springer, New York
    • Kolenbrander PE, Moore LVH. The genus Veillonella. in: H.G. Balows, M. Trüper, W. Dworkin, W. Harder, K.H. Schleifer (Eds.), The prokaryotes (2nd ed.), Springer, New York (1992), pp. 2034-2047.
    • (1992) The prokaryotes , pp. 2034-2047
    • Kolenbrander, P.E.1    Moore, L.V.H.2
  • 11
    • 84880747268 scopus 로고    scopus 로고
    • Identification of Veillonella tobetsuensis in tongue biofilm by using a species-specific primer pair
    • Mashima I, Nakazawa F. Identification of Veillonella tobetsuensis in tongue biofilm by using a species-specific primer pair. Anaerobe 2013; 22:77_81.
    • (2013) Anaerobe , vol.22 , pp. 77-81
    • Mashima, I.1    Nakazawa, F.2
  • 13
    • 34250665888 scopus 로고    scopus 로고
    • RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
    • [doi:10.1093/nar/gkm160] [pmid:17452365]
    • Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007; 35:3100-3108. [doi:10.1093/nar/gkm160] [pmid:17452365]
    • (2007) Nucleic Acids Res , vol.35 , pp. 3100-3108
    • Lagesen, K.1    Hallin, P.2    Rødland, E.A.3    Staerfeldt, H.H.4    Rognes, T.5    Ussery, D.W.6
  • 14
    • 77955019084 scopus 로고    scopus 로고
    • Parallelization of the MAFFT multiple sequence alignment program
    • [doi:10.1093/bioinformatics/btq224] [pmid:20427515]
    • Katoh K, Toh H. Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 2010;26:1899-1900. [doi:10.1093/bioinformatics/btq224] [pmid:20427515]
    • (2010) Bioinformatics , vol.26 , pp. 1899-1900
    • Katoh, K.1    Toh, H.2
  • 15
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • [doi:10.1093/molbev/msr121] [pmid:21546353]
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 2011; 28:2731-2739. [doi:10.1093/molbev/msr121] [pmid:21546353]
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 16
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • [pmid:3447015]
    • Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406-425. [pmid:3447015]
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 17
    • 67849101838 scopus 로고    scopus 로고
    • CVTree update: A newly designed phylogenetic study platform using composition vectors and whole genomes
    • [doi:10.1093/nar/gkp278] [pmid:19398429]
    • Xu Z, Hao B. CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes. Nucleic Acids Res 2009; 37(suppl 2):W174-W178. [doi:10.1093/nar/gkp278] [pmid:19398429]
    • (2009) Nucleic Acids Res , vol.37 , Issue.SUPPL. 2
    • Xu, Z.1    Hao, B.2
  • 18
    • 33644700003 scopus 로고    scopus 로고
    • Toward automatic reconstruction of a highly resolved tree of life
    • [doi:10.1126/science.1123061] [pmid:16513982]
    • Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P. Toward automatic reconstruction of a highly resolved tree of life. Science 2006; 311:1283-1287. [doi:10.1126/science.1123061] [pmid:16513982]
    • (2006) Science , vol.311 , pp. 1283-1287
    • Ciccarelli, F.D.1    Doerks, T.2    von Mering, C.3    Creevey, C.J.4    Snel, B.5    Bork, P.6
  • 19
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • [doi:10.1093/nar/gkh340] [pmid:15034147]
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792-1797. [doi:10.1093/nar/gkh340] [pmid:15034147]
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 20
    • 0022806029 scopus 로고
    • Microcomputers and phylogenetic analysis
    • [doi:10.1126/science.234.4780.1135] [pmid:17778959]
    • Fink WL. Microcomputers and phylogenetic analysis. Science 1986; 234:1135-1139. [doi:10.1126/science.234.4780.1135] [pmid:17778959]
    • (1986) Science , vol.234 , pp. 1135-1139
    • Fink, W.L.1
  • 21
    • 0033990046 scopus 로고    scopus 로고
    • Phylogenetic analysis using PHYLIP
    • [pmid:10547839]
    • Retief JD. Phylogenetic analysis using PHYLIP. Methods Mol Biol 2000; 132:243-258. [pmid:10547839]
    • (2000) Methods Mol Biol , vol.132 , pp. 243-258
    • Retief, J.D.1
  • 22
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: A genomic signature
    • [doi:10.1016/S0168-9525(00)89076-9] [pmid:7482779]
    • Karlin S, Burge C. Dinucleotide relative abundance extremes: a genomic signature. Trends Genet 1995;11:283-290. [doi:10.1016/S0168-9525(00)89076-9] [pmid:7482779]
    • (1995) Trends Genet , vol.11 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 23
    • 77749296886 scopus 로고    scopus 로고
    • ggplot2: Springer New York, ISBN-10: 0387981403 {pipe} ISBN-13: 978-0387981406
    • Wickham H: ggplot2: Elegant Graphics for Data Analysis (Use R!). Springer New York, 2009. ISBN-10: 0387981403 {pipe} ISBN-13: 978-0387981406
    • (2009) Elegant Graphics for Data Analysis (Use R!)
    • Wickham, H.1
  • 24
    • 0345863935 scopus 로고    scopus 로고
    • The KEGG resource for deciphering the genome
    • [doi:10.1093/nar/gkh063] [pmid:14681412]
    • Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. The KEGG resource for deciphering the genome. Nucleic Acids Res 2004; 32:277-280. [doi:10.1093/nar/gkh063] [pmid:14681412]
    • (2004) Nucleic Acids Res , vol.32 , pp. 277-280
    • Kanehisa, M.1    Goto, S.2    Kawashima, S.3    Okuno, Y.4    Hattori, M.5
  • 25
    • 0031743421 scopus 로고    scopus 로고
    • BIOINFORMATICS REVIEW Profile hidden Markov models. [Pub Med]
    • [doi:10.1093/bioinformatics/14.9.755] [pmid:9918945]
    • Eddy SR. BIOINFORMATICS REVIEW Profile hidden Markov models. [Pub Med]. Bioinformatics 1998; 14:755-763. [doi:10.1093/bioinformatics/14.9.755] [pmid:9918945]
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 26
    • 0028205447 scopus 로고
    • Enlarged representative set of protein structures
    • [doi:10.1002/pro.5560030317] [pmid:8019422]
    • Hobohm U, Sander C. Enlarged representative set of protein structures. Protein Sci 1994; 3:522-524. [doi:10.1002/pro.5560030317] [pmid:8019422]
    • (1994) Protein Sci , vol.3 , pp. 522-524
    • Hobohm, U.1    Sander, C.2
  • 28
    • 79960739830 scopus 로고    scopus 로고
    • Origin of diderm (Gram-negative) bacteria: Antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes
    • [doi:10.1007/s10482-011-9616-8] [pmid:21717204]
    • Gupta RS. Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes. Antonie van Leeuwenhoek 2011; 100:171-182. [doi:10.1007/s10482-011-9616-8] [pmid:21717204]
    • (2011) Antonie van Leeuwenhoek , vol.100 , pp. 171-182
    • Gupta, R.S.1
  • 29
    • 0037315735 scopus 로고    scopus 로고
    • Evolutionary implications of microbial genome tetranucleotide frequency biases
    • [doi:10.1101/gr.335003] [pmid:12566393]
    • Pride DT, Meinersmann RJ, Wassenaar TM, Blaser MJ. Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res 2003; 13:145-158. [doi:10.1101/gr.335003] [pmid:12566393]
    • (2003) Genome Res , vol.13 , pp. 145-158
    • Pride, D.T.1    Meinersmann, R.J.2    Wassenaar, T.M.3    Blaser, M.J.4
  • 30
    • 84860265013 scopus 로고    scopus 로고
    • Microbial lifestyle and genome signatures
    • [doi:10.2174/138920212799860698] [pmid:23024607]
    • Dutta C, Paul S. Microbial lifestyle and genome signatures. Curr Genomics 2012; 13:153-162. [doi:10.2174/138920212799860698] [pmid:23024607]
    • (2012) Curr Genomics , vol.13 , pp. 153-162
    • Dutta, C.1    Paul, S.2
  • 31
    • 61449201423 scopus 로고    scopus 로고
    • Island Viewer: An integrated interface for computational identification and visualization of genomic islands
    • [doi:10.1093/bioinformatics/btp030] [pmid:19151094]
    • Langille MG, Brinkman FS. Island Viewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 2009; 25:664-665. [doi:10.1093/bioinformatics/btp030] [pmid:19151094]
    • (2009) Bioinformatics , vol.25 , pp. 664-665
    • Langille, M.G.1    Brinkman, F.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.