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Volumn 18, Issue 4, 2013, Pages 707-723

Thinking Dynamically About Biological Mechanisms: Networks of Coupled Oscillators

Author keywords

Circadian rhythms; Computational modeling; Dynamic mechanistic explanation; Endogenously active mechanisms; Mechanistic explanation; Oscillatory mechanisms; Recomposing mechanisms

Indexed keywords

COMPUTATION THEORY; COMPUTATIONAL METHODS; DIFFERENTIAL EQUATIONS; NETWORK ARCHITECTURE; PHILOSOPHICAL ASPECTS; SYNCHRONIZATION;

EID: 84890434713     PISSN: 12331821     EISSN: 15728471     Source Type: Journal    
DOI: 10.1007/s10699-012-9301-z     Document Type: Article
Times cited : (52)

References (45)
  • 1
    • 20044362444 scopus 로고    scopus 로고
    • Vasoactive intestinal polypeptide mediates circadian rhythmicity and synchrony in mammalian clock neurons
    • Aton S. J., Colwell C. S., Harmar A. J., Waschek J., Herzog E. D. (2005) Vasoactive intestinal polypeptide mediates circadian rhythmicity and synchrony in mammalian clock neurons. Nature Neuroscience 8: 476-483.
    • (2005) Nature Neuroscience , vol.8 , pp. 476-483
    • Aton, S.J.1    Colwell, C.S.2    Harmar, A.J.3    Waschek, J.4    Herzog, E.D.5
  • 2
    • 77249107876 scopus 로고    scopus 로고
    • Generalization and discovery by assuming conserved mechanisms: Cross species research on circadian oscillators
    • Bechtel W. (2009) Generalization and discovery by assuming conserved mechanisms: Cross species research on circadian oscillators. Philosophy of Science 76: 762-773.
    • (2009) Philosophy of Science , vol.76 , pp. 762-773
    • Bechtel, W.1
  • 4
    • 74949109096 scopus 로고    scopus 로고
    • Decomposing, recomposing, and situating circadian mechanisms: Three tasks in developing mechanistic explanations
    • H. Leitgeb and A. Hieke (Eds.), Frankfurt: Ontos Verlag
    • Bechtel W., Abrahamsen A. (2009) Decomposing, recomposing, and situating circadian mechanisms: Three tasks in developing mechanistic explanations. In: Leitgeb H., Hieke A. (Eds.) Reduction and elimination in philosophy of mind and philosophy of neuroscience. Ontos Verlag, Frankfurt, pp 173-186.
    • (2009) Reduction and Elimination in Philosophy of Mind and Philosophy of Neuroscience , pp. 173-186
    • Bechtel, W.1    Abrahamsen, A.2
  • 5
    • 77957135953 scopus 로고    scopus 로고
    • Dynamic mechanistic explanation: Computational modeling of circadian rhythms as an exemplar for cognitive science
    • Bechtel, W., & Abrahamsen, A. (2010). Dynamic mechanistic explanation: Computational modeling of circadian rhythms as an exemplar for cognitive science. Studies in History and Philosophy of Science Part A, 41, 321-333.
    • (2010) Studies in History and Philosophy of Science Part A , vol.41 , pp. 321-333
    • Bechtel, W.1    Abrahamsen, A.2
  • 9
    • 34247622366 scopus 로고    scopus 로고
    • Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus
    • Bernard S., Gonze D., Čajavec B., Herzel H., Kramer A. (2007) Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Computational Biology 3(4): e68.
    • (2007) PLoS Computational Biology , vol.3 , Issue.4
    • Bernard, S.1    Gonze, D.2    Čajavec, B.3    Herzel, H.4    Kramer, A.5
  • 10
    • 0000733534 scopus 로고
    • Organization of physiological homeostasis
    • Cannon W. B. (1929) Organization of physiological homeostasis. Physiological Reviews 9: 399-431.
    • (1929) Physiological Reviews , vol.9 , pp. 399-431
    • Cannon, W.B.1
  • 11
    • 78651154664 scopus 로고
    • Damped sinusoidal oscillations of cytoplasmic reduced pyridine nucleotide in yeast cells
    • Chance B., Estabrook R. W., Ghosh A. (1964) Damped sinusoidal oscillations of cytoplasmic reduced pyridine nucleotide in yeast cells. Proceedings of the National Academy of Sciences 51(6): 1244-1251.
    • (1964) Proceedings of the National Academy of Sciences , vol.51 , Issue.6 , pp. 1244-1251
    • Chance, B.1    Estabrook, R.W.2    Ghosh, A.3
  • 12
    • 2342588784 scopus 로고    scopus 로고
    • Forced desynchronization of dual circadian oscillators within the rat suprachiasmatic nucleus
    • de la Iglesia H. O., Cambras T., Schwartz W. J., Díez-Noguera A. (2004) Forced desynchronization of dual circadian oscillators within the rat suprachiasmatic nucleus. Current Biology 14(9): 796-800.
    • (2004) Current Biology , vol.14 , Issue.9 , pp. 796-800
    • de la Iglesia, H.O.1    Cambras, T.2    Schwartz, W.J.3    Díez-Noguera, A.4
  • 14
    • 0000747853 scopus 로고
    • Frequency plateaus in a chain of weakly coupled oscillators. 1
    • Ermentrout G. B., Kopell N. (1984) Frequency plateaus in a chain of weakly coupled oscillators. 1. SIAM Journal on Mathematical Analysis 15(2): 215-237.
    • (1984) SIAM Journal on Mathematical Analysis , vol.15 , Issue.2 , pp. 215-237
    • Ermentrout, G.B.1    Kopell, N.2
  • 15
    • 0025718412 scopus 로고
    • Distributed hierarchical processing in the primate cerebral cortex
    • Felleman D. J., van Essen D. C. (1991) Distributed hierarchical processing in the primate cerebral cortex. Cerebral Cortex 1: 1-47.
    • (1991) Cerebral Cortex , vol.1 , pp. 1-47
    • Felleman, D.J.1    van Essen, D.C.2
  • 18
    • 0013823048 scopus 로고
    • Oscillatory behavior in enzymatic control processes
    • Goodwin B. C. (1965) Oscillatory behavior in enzymatic control processes. Advances in Enzyme Regulation 3: 425-428.
    • (1965) Advances in Enzyme Regulation , vol.3 , pp. 425-428
    • Goodwin, B.C.1
  • 19
    • 0014319313 scopus 로고
    • Mathematics of cellular control processes I. Negative feedback to one gene
    • Griffith J. S. (1968) Mathematics of cellular control processes I. Negative feedback to one gene. Journal of Theoretical Biology 20(2): 202-208.
    • (1968) Journal of Theoretical Biology , vol.20 , Issue.2 , pp. 202-208
    • Griffith, J.S.1
  • 20
    • 0025044560 scopus 로고
    • Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels
    • Hardin P. E., Hall J. C., Rosbash M. (1990) Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels. Nature 343(6258): 536-540.
    • (1990) Nature , vol.343 , Issue.6258 , pp. 536-540
    • Hardin, P.E.1    Hall, J.C.2    Rosbash, M.3
  • 21
    • 0345826009 scopus 로고    scopus 로고
    • Temporal precision in the mammalian circadian system: A reliable clock from less reliable neurons
    • Herzog E. D., Aton S. J., Numano R., Sakaki Y., Tei H. (2004) Temporal precision in the mammalian circadian system: A reliable clock from less reliable neurons. Journal of Biological Rhythms 19(1): 35-46.
    • (2004) Journal of Biological Rhythms , vol.19 , Issue.1 , pp. 35-46
    • Herzog, E.D.1    Aton, S.J.2    Numano, R.3    Sakaki, Y.4    Tei, H.5
  • 25
    • 0031990984 scopus 로고    scopus 로고
    • A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins
    • Leloup J.-C., Goldbeter A. (1998) A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins. Journal of Biological Rhythms 13(1): 70-87.
    • (1998) Journal of Biological Rhythms , vol.13 , Issue.1 , pp. 70-87
    • Leloup, J.-C.1    Goldbeter, A.2
  • 26
    • 0037795575 scopus 로고    scopus 로고
    • Toward a detailed computational model for the mammalian circadian clock
    • Leloup J.-C., Goldbeter A. (2003) Toward a detailed computational model for the mammalian circadian clock. Proceedings of the National Academy of Sciences 100(12): 7051-7056.
    • (2003) Proceedings of the National Academy of Sciences , vol.100 , Issue.12 , pp. 7051-7056
    • Leloup, J.-C.1    Goldbeter, A.2
  • 27
    • 4444301677 scopus 로고    scopus 로고
    • Modeling the mammalian circadian clock: Sensitivity analysis and multiplicity of oscillatory mechanisms
    • Leloup J.-C., Goldbeter A. (2004) Modeling the mammalian circadian clock: Sensitivity analysis and multiplicity of oscillatory mechanisms. Journal of Theoretical Biology 230(4): 541-562.
    • (2004) Journal of Theoretical Biology , vol.230 , Issue.4 , pp. 541-562
    • Leloup, J.-C.1    Goldbeter, A.2
  • 30
    • 0015504847 scopus 로고
    • Loss of a circadian adrenal corticosterone rhythm following suprachiasmatic lesions in the rat
    • Moore R. Y., Eichler V. B. (1972) Loss of a circadian adrenal corticosterone rhythm following suprachiasmatic lesions in the rat. Brain Research 42: 201-206.
    • (1972) Brain Research , vol.42 , pp. 201-206
    • Moore, R.Y.1    Eichler, V.B.2
  • 31
    • 14544270956 scopus 로고    scopus 로고
    • Constant light desynchronizes mammalian clock neurons
    • Ohta H., Yamazaki S., McMahon D. G. (2005) Constant light desynchronizes mammalian clock neurons. Nature Neuroscience 8: 267-269.
    • (2005) Nature Neuroscience , vol.8 , pp. 267-269
    • Ohta, H.1    Yamazaki, S.2    McMahon, D.G.3
  • 33
  • 34
    • 18044383304 scopus 로고    scopus 로고
    • Highly nonrandom features of synaptic connectivity in local cortical circuits
    • Song S., Sjöström P. J., Reigl M., Nelson S., Chklovskii D. B. (2005) Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biology 3(3): e68.
    • (2005) PLoS Biology , vol.3 , Issue.3
    • Song, S.1    Sjöström, P.J.2    Reigl, M.3    Nelson, S.4    Chklovskii, D.B.5
  • 35
    • 4444229670 scopus 로고    scopus 로고
    • The small world of the cerebral cortex
    • Sporns O., Zwi J. D. (2004) The small world of the cerebral cortex. Neuroinformatics 2(2): 145-162.
    • (2004) Neuroinformatics , vol.2 , Issue.2 , pp. 145-162
    • Sporns, O.1    Zwi, J.D.2
  • 36
    • 0035826155 scopus 로고    scopus 로고
    • Exploring complex networks
    • Strogatz S. H. (2001) Exploring complex networks. Nature 410(6825): 268-276.
    • (2001) Nature , vol.410 , Issue.6825 , pp. 268-276
    • Strogatz, S.H.1
  • 37
    • 1542498607 scopus 로고    scopus 로고
    • Pathways to biomedical discovery
    • Thagard P. (2003) Pathways to biomedical discovery. Philosophy of Science 70: 235-254.
    • (2003) Philosophy of Science , vol.70 , pp. 235-254
    • Thagard, P.1
  • 38
    • 34250367538 scopus 로고    scopus 로고
    • A molecular model for intercellular synchronization in the mammalian circadian clock
    • To T.-L., Henson M. A., Herzog E. D., Doyle F. J. III (2007) A molecular model for intercellular synchronization in the mammalian circadian clock. Biophysical Journal 92(11): 3792-3803.
    • (2007) Biophysical Journal , vol.92 , Issue.11 , pp. 3792-3803
    • To, T.-L.1    Henson, M.A.2    Herzog, E.D.3    Doyle III, F.J.4
  • 40
    • 66149190669 scopus 로고    scopus 로고
    • Small-world network models of intercellular coupling predict enhanced synchronization in the suprachiasmatic nucleus
    • Vasalou C., Herzog E. D., Henson M. A. (2009) Small-world network models of intercellular coupling predict enhanced synchronization in the suprachiasmatic nucleus. Journal of Biological Rhythms 24(3): 243-254.
    • (2009) Journal of Biological Rhythms , vol.24 , Issue.3 , pp. 243-254
    • Vasalou, C.1    Herzog, E.D.2    Henson, M.A.3
  • 41
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of small worlds
    • Watts D., Strogratz S. (1998) Collective dynamics of small worlds. Nature 393: 440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.1    Strogratz, S.2
  • 42
    • 0028904194 scopus 로고
    • Individual neurons dissociated from rat suprachiasmatic nucleus express independently phased circadian firing rhythms
    • Welsh D. K., Logothetis D. E., Meister M., Reppert S. M. (1995) Individual neurons dissociated from rat suprachiasmatic nucleus express independently phased circadian firing rhythms. Neuron 14(4): 697-706.
    • (1995) Neuron , vol.14 , Issue.4 , pp. 697-706
    • Welsh, D.K.1    Logothetis, D.E.2    Meister, M.3    Reppert, S.M.4
  • 44
    • 0002813857 scopus 로고
    • Reductionism, levels of organization, and the mind-body problem
    • G. Globus, G. Maxwell, and I. Savodnik (Eds.), New York: Plenum Press
    • Wimsatt W. C. (1976) Reductionism, levels of organization, and the mind-body problem. In: Globus G., Maxwell G., Savodnik I. (Eds.) Consciousness and the brain: A scientific and philosophical inquiry. Plenum Press, New York, pp 202-267.
    • (1976) Consciousness and the Brain: A Scientific and Philosophical Inquiry , pp. 202-267
    • Wimsatt, W.C.1
  • 45
    • 0014108715 scopus 로고
    • Biological rhythms and the behavior of populations of coupled oscillators
    • Winfree A. T. (1967) Biological rhythms and the behavior of populations of coupled oscillators. Journal of Theoretical Biology 16(1): 15-42.
    • (1967) Journal of Theoretical Biology , vol.16 , Issue.1 , pp. 15-42
    • Winfree, A.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.