Exploiting genes and functional diversity of chlorogenic acid and luteolin biosyntheses in Lonicera japonica and their substitutes

Gene

Volumn 534, Issue 2, 2014, Pages 408-416

  Yuan, Yuan ^a   Wang, Zhouyong ^a   Jiang, Chao ^a   Wang, Xumin ^b   Huang, Luqi ^a  

^a INSTITUTE OF CHINESE MATERIA MEDICA   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Chlorogenic acid; Gene expression; Honeysuckle; Luteolin; Othologous genes

Indexed keywords

CHLOROGENIC ACID; LUTEOLIN; TRANSCRIPTOME;

ARTICLE; BIOINFORMATICS; ENZYME ACTIVITY; GENE EXPRESSION; GENE SEQUENCE; GENE SYNTHESIS; GENETIC VARIABILITY; LONICERA; LONICERA HYPOGLAUCA; LONICERA JAPONICA; LONICERA MACRANTHOIDES; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENOME; PRIORITY JOURNAL;

LONICERA; LONICERA JAPONICA;

CDNA; CHLOROGENIC ACID; COMPLEMENTARY DNA; DEGENERATE PRIMER; DEOXYRIBONUCLEIC ACIDS; DNA; DP; GENE EXPRESSION; HONEYSUCKLE; LUTEOLIN; OPEN READING FRAME; ORF; OTHOLOGOUS GENES; PCR; POLYMERASE CHAIN REACTION; RACE; RAID AMPLIFICATION OF CDNA ENDS; RIBONUCLEIC ACIDS; RNA; SELAGINELLA PULVINTA; SP; TPP; TPS; TREHALOSE-6-PHOSPHATE PHOSPHATASE; TREHALOSE-6-PHOSPHATE SYNTHASE; TREHALOSE-6-PHOSPHATE SYNTHASE GENE;

CHLOROGENIC ACID; COMPUTATIONAL BIOLOGY; DNA, COMPLEMENTARY; GENE EXPRESSION; GENES, PLANT; LONICERA; LUTEOLIN; MEDICINE, CHINESE TRADITIONAL; PHYLOGENY; PLANT LEAVES; TRANSCRIPTOME;

EID: 84890427183     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.09.051     Document Type: Article

References (43)

1. Adato A., et al. Fruit-surface flavonoid accumulation in tomato is controlled by a SlMYB12-regulated transcriptional network. PLoS Genet. 2009, 5:e1000777.
2. Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
3. Bai G.B., Peng X.X., Li W.D., Wang W.Q. Cloning and characterization of a cDNA coding a hydroxycinnamoyl-CoA quinate hydroxycinnamoyl transferase involved in chlorogenic acid biosynthesis in Lonicera japonica. Planta Med. 2010, 76:1921-1926.
4. Bjellqvist B., Basse B., Olsen E., Celis J.E. Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions. Electrophoresis 1994, 15:529-539.
5. Brueske C.H. Phenylalanine ammonia lyase activity in tomatoroots infected and resistant to the root-knot nematode, Meloidogyne incognita. Physiol. Plant Pathol. 1980, 16:409-414.
6. Burge C.B., Karlin S. Finding the genes in genomic DNA. Curr. Opin. Struct. Biol. 1998, 8:346-354.
7. Cao S., Hu Z., Zheng Y., Lu B. Effect of BTH on anthocyanin content and activities of related enzymes in strawberry after harvest. J. Agric. Food Chem. 2010, 58:5801-5805.
8. Chen Q.Z., Lin R.C., Wang G.L., Li F.M. Studies on chemical constituents of the extract of Lonicera japonica. Zhong Yao Cai 2010, 33:920-922.
9. Chinese Pharmacopoeia Commission The Pharmacopoeia of the People's Republic of China 2010, 205-206. China Medical Science Press, Beijing. 2010 ed.
10. Chu C., Liu H.J., Qi L.W., Liu E.H., Li P. Combination of normal light and fluorescence microscopy for authentication of five Lonicera species flower buds. Microsc. Res. Tech. 2011, 74:133-141.
11. Clifford M.N. Chlorogenic acids and other cinnamates-nature, occurrence and dietary burden. J. Sci. Food Agric. 1999, 79:362-372.
12. Deng L.J., Zhao X.Z., Huang S.M., Huang S.J., Ou S.S., Wu Q.H. Chlorogenic acid content determination in branches, leaves and flowers of Lonricera japonica from Xincheng County. J. Guangxi Agric. 2007, 22:34-36.
13. Emanuelsson O., Brunak S., von Heijne G., Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2007, 2:953-971.
14. Ferrer J.L., Austin M.B., Stewart C., Noel J.P. Structure and function of enzymes involved in the biosynthesis of phenylpropanoids. Plant Physiol. Biochem. 2008, 46:356-370.
15. Fraser C.M., Chapple C. The phenylpropanoid pathway in Arabidopsis. Arabidopsis Book. 2011, 9:e0152.
16. Hittinger C.T., Carroll S.B. Gene duplication and the adaptive evolution of a classic genetic switch. Nature 2007, 449:677-681.
17. Kashmir S., Sanjay K., Arti R., Ashu G., Paramvir S. Phenylalanine ammonia-lyase (PAL) and cinnamate 4-hydroxylase (C4H) and catechins (flavan-3-ols) accumulation in tea. Funct. Integr. Genomics 2009, 9(1):125-134.
18. Kovacik J., Klejdus B., Repčáková K. Phenolic metabolites in carnivorous plants: inter-specific comparison and physiological studies. Plant Physiol. Biochem. 2012, 52:21-27.
19. Ku S., et al. Effect of Lonicerae Flos extracts on reflux esophagitis with antioxidant activity. World J. Gastroenterol. 2009, 15:4799-4805.
20. Kumar S., Dudley J., Nei M., Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 2008, 9:299-306.
21. Li Y., Ogita S., Keya C.A., Ashihara H. Expression of caffeine biosynthesis genes in tea (Camellia sinensis). Z. Naturforsch. C 2008, 63:267-270.
22. Lim D., Cho H., Kim J., Nho C., Lee K., Park J. Luteolin decreases IGF-II production and downregulates insulin-like growth factor-I receptor signaling in HT-29 human colon cancer cells. BMC Gastroenterol. 2012, 12:9.
23. Lowry O.H., Rosebrough N.R., Farr A.L. Protein measurement with the Folin-phenol reagent. J. Biol. Chem. 1951, 193:265-269.
24. Lu S., Zhou Y., Li L., Chiang V. Distinct roles of cinnamate 4-hydroxylase genes in populus. Plant Cell Physiol. 2006, 47:905-914.
25. Molgaard P., Ravn H. Evolutionary aspects of caffeoyl ester distribution in dicotyledons. Phytochemistry 1988, 27:2411-2421.
26. Olsen K.M., Lea U.S., Slimestad R., Verheul M., Lillo C. Differential expression of four Arabidopsis PAL genes; PAL1 and PAL2 have functional specialization in abiotic environmental-triggered flavonoid synthesis. J. Plant Physiol. 2008, 165:1491-1499.
27. Peng X., Li W., Wang W., Bai G. Cloning and characterization of a cDNA coding a hydroxycinnamoyl-CoA quinate hydroxycinnamoyl transferase involved in chlorogenic acid biosynthesis in Lonicera japonica. Planta Med. 2010, 76:1921-1926.
28. Pierantoni L., Dondini L., De Franceschi P., Musacchi S., Winkel B.S., Sansavini S. Mapping of an anthocyanin-regulating MYB transcription factor and its expression in red and green pear. Pyrus communis. Plant Physiol. Biochem. 2010, 48:1020-1026.
29. Quevillon E., et al. InterProScan: protein domains identifier. Nucleic Acids Res. 2005, 33:W116-W120.
30. Raes J., Rohde A., Christensen J.H., Van de Peer Y., Boerjan W. Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol. 2003, 133:1051-1071.
31. Rani A., Singh K., Ahuja P.S., Kumar S. Molecular regulation of catechins biosynthesis in tea [Camellia sinensis (L.) O. Kuntze]. Gene 2012, 495:205-210.
32. Roslan N.D., et al. Flavonoid biosynthesis genes putatively identified in the aromatic plant polygonum minus via expressed sequences tag (EST) analysis. Int. J. Mol. Sci. 2012, 13:2692-2706.
33. Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
34. Shang X., Pan H., Li M., Miao X., Ding H. Lonicera japonica Thunb.: ethnopharmacology, phytochemistry and pharmacology of an important traditional Chinese medicine. J. Ethnopharmacol. 2011, 138:1-21.
35. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
36. Tatusov R.L., Koonin E.V., Lipman D.J. A genomic perspective on protein families. Science 1997, 278:631-637.
37. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
38. Ververidis F., Trantas E., Douglas C., Vollmer G., Kretzschmar G., Panopoulos N. Biotechnology of flavonoids and other phenylpropanoid-derived natural products. Part I: Chemical diversity, impacts on plant biology and human health. Biotechnol. J. 2007, 2(10):1214-1234.
39. Vogt T. Phenylpropanoid biosynthesis. Mol. Plant 2010, 3:2-20.
40. Voo K.S., Whetten R.W., O'Malley D.M., Sederoff R.R. 4-Coumarate: coenzyme A ligase from loblolly pine xylem (isolation, characterization, and complementary DNA cloning). Plant Physiol. 1995, 108:85-97.
41. Yuan Y., et al. Genetic variation and metabolic pathway intricacy govern the active compound content and quality of the Chinese medicinal plant Lonicera japonica Thunb. BMC Genomics 2012, 13:195.
42. Zhang C., et al. Chemical constituents from stems of Lonicera japonica. Zhongguo Zhong Yao Za Zhi 2009, 34:3051-3053.
43. Zhao X., Ge Y., Wang D., Li S., Liu J., Wang X. Determination of extracted Chlorogenic acid and Luteolin-7-O-glucoside in Flos lonicerae by HPLC-DAD. Chin. J. Anal. Lab. 2010, 29s:77-80.