Selectivity analysis of single binder assays used in plasma protein profiling

Proteomics

Volumn 13, Issue 23-24, 2013, Pages 3406-3410

  Neiman, Maja ^a   Fredolini, Claudia ^a   Johansson, Henrik ^b   Lehtiö, Janne ^b   Nygren, Per Åke ^a   Uhlén, Mathias ^a   Nilsson, Peter ^a   Schwenk, Jochen M ^a  

^a ROYAL INSTITUTE OF TECHNOLOGY   (Sweden)

^b KAROLINSKA INSTITUTE   (Sweden)

Author keywords

Antibodies; Plasma profiling; Protein arrays; Suspension bead arrays; Verification

Indexed keywords

CHEMOKINE; CHEMOKINE C C MOTIF LIGAND 16; COMPLEMENT COMPONENT C2; FIBRINOGEN; FIBRINOGEN ALPHA; FIBULIN; FIBULIN 1; NEUTROPHIL GELATINASE ASSOCIATED LIPOCALIN; PLASMA PROTEIN; UNCLASSIFIED DRUG;

ANTIBODY COMBINING SITE; ANTIGEN BINDING; ARTICLE; BINDING ASSAY; FLOW CYTOMETRY; HEAT TREATMENT; HUMAN; MASS SPECTROMETRY; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MICROARRAY; SELECTIVITY ANALYSIS; SINGLE BINDER ASSAY; WESTERN BLOTTING;

ANTIBODIES; PLASMA PROFILING; PROTEIN ARRAYS; SUSPENSION BEAD ARRAYS; VERIFICATION;

ACUTE-PHASE PROTEINS; ANTIBODIES, IMMOBILIZED; ANTIBODY SPECIFICITY; BLOOD PROTEINS; CHEMOKINES, CC; DATABASES, PROTEIN; HUMANS; LIPOCALINS; PROTEOMICS; PROTO-ONCOGENE PROTEINS;

EID: 84890306435     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201300030     Document Type: Article

References (19)

1. Stoevesandt, O., Taussig, M. J., Affinity proteomics: the role of specific binding reagents in human proteome analysis. Expert. Rev. Proteomics 2012, 9, 401-414.
2. Stoevesandt, O., Taussig, M. J., European and international collaboration in affinity proteomics. N. Biotechnol. 2012, 29, 511-514.
3. Uhlen, M., Oksvold, P., Fagerberg, L., Lundberg, E. et al., Towards a knowledge-based Human Protein Atlas. Nat. Biotechnol. 2010, 28, 1248-1250.
4. Fagerberg, L., Oksvold, P., Skogs, M., Algenas, C. et al., Contribution of antibody-based protein profiling to the human chromosome-centric proteome project (C-HPP). J. Proteome Res. 2013, 12, 2439-2448.
5. Schwenk, J. M., Gry, M., Rimini, R., Uhlen, M., Nilsson, P., Antibody suspension bead arrays within serum proteomics. J. Proteome Res. 2008, 7, 3168-3179.
6. Haggmark, A., Neiman, M., Drobin, K., Zwahlen, M. et al., Classification of protein profiles from antibody microarrays using heat and detergent treatment. N. Biotechnol. 2012, 29, 564-570.
7. Neiman, M., Hedberg, J. J., Donnes, P. R., Schuppe-Koistinen, I. et al., Plasma profiling reveals human fibulin-1 as candidate marker for renal impairment. J. Proteome Res. 2011, 10, 4925-4934.
8. Schwenk, J. M., Igel, U., Neiman, M., Langen, H. et al., Toward next generation plasma profiling via heat-induced epitope retrieval and array-based assays. Mol. Cell Proteomics 2010, 9, 2497-2507.
9. Wu, W., Slastad, H., de la Rosa Carrillo, D., Frey, T. et al., Antibody array analysis with label-based detection and resolution of protein size. Mol. Cell Proteomics 2009, 8, 245-257.
10. Slaastad, H., Wu, W., Goullart, L., Kanderova, V. et al., Multiplexed immuno-precipitation with 1725 commercially available antibodies to cellular proteins. Proteomics 2011, 11, 4578-4582.
11. Poetz, O., Henzler, T., Hartmann, M., Kazmaier, C. et al., Sequential multiplex analyte capturing for phosphoprotein profiling. Mol. Cell Proteomics 2010, 9, 2474-2481.
12. Landegren, U., Vanelid, J., Hammond, M., Nong, R. Y. et al., Opportunities for sensitive plasma proteome analysis. Anal. Chem. 2012, 84, 1824-1830.
13. Lind, P., Hedblad, B., Stavenow, L., Janzon, L. et al., Influence of plasma fibrinogen levels on the incidence of myocardial infarction and death is modified by other inflammation-sensitive proteins: a long-term cohort study. Arterioscler. Thromb. Vasc. Biol. 2001, 21, 452-458.
14. Argraves, W. S., Tran, H., Burgess, W. H., Dickerson, K., Fibulin is an extracellular matrix and plasma glycoprotein with repeated domain structure. J. Cell Biol. 1990, 111, 3155-3164.
15. Borte, S., Wang, N., Oskarsdottir, S., von Dobeln, U., Hammarstrom, L., Newborn screening for primary immunodeficiencies: beyond SCID and XLA. Annal. NY Acad. Sci. 2011, 1246, 118-130.
16. Murase, K., Mori, K., Yoshimura, C., Aihara, K. et al., Association between plasma neutrophil gelatinase associated lipocalin level and obstructive sleep apnea or nocturnal intermittent hypoxia. PLoS One 2013, 8, e54184.
17. Del Valle-Pinero, A. Y., Martino, A. C., Taylor, T. J., Majors, B. L. et al., Pro-inflammatory chemokine C-C motif ligand 16 (CCL-16) dysregulation in irritable bowel syndrome (IBS): a pilot study. Neurogastroenterol. Motility 2011, 23, 1092-1097.
18. Finckh, P., Berger, H., Karl, J., Eichenlaub, U. et al., Microspot-an ultrasensitive microarray-based ligand assay system. A practical application of ambient analyte assay theory. Proc. UK NEQAS Meeting 1998, 3, 155-165.
19. Meszaros, K., Aberle, S., White, M., Parent, J. B., Immunoreactivity and bioactivity of lipopolysaccharide-binding protein in normal and heat-inactivated sera. Infect Immun. 1995, 63, 363-365.