Utilization of endophytic strain bacillus sp. SBER3 for biodegradation of polyaromatic hydrocarbons (PAH) in soil model system

European Journal of Soil Biology

Volumn 60, Issue , 2014, Pages 67-76

  Bisht, S ^a   Pandey, P ^b   Kaur, G ^c   Aggarwal, H ^d   Sood, A ^e   Sharma, S ^f   Kumar, V ^g   Bisht, N S ^h  

^a Uttarakhand University of Horticulture and Forestry   (India)

^b ASSAM UNIVERSITY   (India)

^c DEFENCE INSTITUTE OF PHYSIOLOGY AND ALLIED SCIENCES   (India)

^d MAHARISHI MARKANDESHWAR DEEMED TO BE UNIVERSITY   (India)

^e Dolphin (PG) College   (India)

^f MOTILAL NEHRU NATIONAL INSTITUTE OF TECHNOLOGY   (India)

^g AMITY UNIVERSITY   (India)

^h H N B GARHWAL UNIVERSITY   (India)

Author keywords

Bacillus; Endophytes; PAH; PGP; Rhizoremediation

Indexed keywords

EID: 84890157948     PISSN: 11645563     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejsobi.2013.10.009     Document Type: Article

References (76)

1. Menzie C.A., Potokib B. Exposure to carcinogenic PAHs in the environment. Environ. Sci. Technol. 1992, 26:1278-1284.
2. Wilson S.C., Joins K.C. Bioremediation of soil contaminated with polycyclic aromatic hydrocarbons (PAHs): a review. Environ. Pollut. 1993, 81:229-249.
3. Wingfors H., Sjodin A., Haglund P., Lunden E.B. Characterization and determination of profiles of polycyclic aromatic hydrocarbons in traffic tunnel in Gothenburg, Sweden. Atmos. Environ. 2001, 35:6361-6369.
4. EPA TEST METHOD Polynuclear Aromatic Hydrocarbons, Method 610, US EPA 1992, Environmental Monitoring and Support Laboratory.
5. Ruma R., Raja R., Ranjana C., Pinaki B. Degradation of polyaromatic hydrocarbons by mixed culture isolated from oil contaminated soil - a bioprocess engineering study. Indian J. Biotechnol. 2007, 6:107-113.
6. Cunningham S.D., Ow D.W. Promises and prospects of phytoremediation. Plant Physiol. 1996, 110:715-719.
7. Cunningham S.D., Anderson T.A., Schwab A.P., Hsu F.C. Phytoremediation of soils contaminated with organic pollutants. Adv. Agron. 1996, 56:55-114.
8. Doty S.L. Enhancing phytoremediation through the use of transgenics and endophytes. New Phytol. 2008, 179:318-333.
9. Glick B.R., Karaturovic D.M., Newell P.C. Anovel procedure for rapid isolationof plant growth promoting pseudomonads. Can. J. Microbiol. 1995, 41:533-536.
10. Chabot R., Antoun H., Cescas M.P. Growth promotion of maize and lettuce by phosphate-solubilizing Rhizobium leguminosarum biovar phaseoli. Plant Soil 1996, 184:311-321.
11. Rajkumar M., Nagendran R., Lee K.J., Lee W.H., Kim S.Z. Influence of plant growth promoting bacteria and Cr (vi) on the growth of Indian mustard. Chemosphere 2006, 62:741-748.
12. Hallmann J., Berg G. Spectrum and population dynamics of bacterial root endophytes. Microbial Root Endophytes 2006, 15-31. Springer-Verlag, Berlin. B.J.E. Schulz, C.J.C. Boyle, T.N. Sieber (Eds.).
13. Ryan R.P., Germain K., Franks A., Ryan D.J., Dowling D.N. Bacterial endophytes: recent developments and applications. FEMS Microbiol. Lett. 2008, 278:1-9.
14. Reiter B., Pfeifer U., Schwab H., Sessitsch A. Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. Atroseptica. Appl. Environ. Microbiol. 2002, 68:2261-2268.
15. Kumar V., Aggarwal N.K., Singh B.P. Performance and persistence of P-solubilizing Azotobacter chroococcum in wheat rhizosphere. Folia Microbiol. 2000, 45(4):342-346.
16. Schulz B., Boyle C. What are endophytes?. Microbial Root Endophytes 2006, Sieber TN. B.J.E. Schulz, C.J.C. Boyle (Eds.).
17. Lodewyckx C., Taghavi S., Mergeay M., Vangronsveld J., Clijsters H., van der Lelie D. The effect of recombinant heavy metal resistant endophytic bacteria on heavy metal uptake by their host plant. Int. J. Phytorem. 2001, 3:173-187.
18. Dalton D., Kramer S., Azios N., Fusaro S., Cahill E., Kennedy C. Endophytic nitrogen fixation in dune grasses (Ammophila arenaria and Elymus mollis) from Oregon. FEMS Microbiol. Ecol. 2004, 49:469-479.
19. Porteous M.F., Barac T., Borremans B., Oeyen L., Vangronsveld J., van der Lelie D., Campbell D., Moore E.R.B. Endophytic bacterial diversity in poplar trees growing on a BTEX-contaminated site: the characterization of isolates withpotential to enhance phytoremediation. Syst. Appl. Microbiol. 2006, 29:539-556.
20. Mastretta C., Barac T., Vangronsveld J., Newman L., Taghavi S., van der Lelie D. Endophytic bacteria and their potential application to improve the phytoremediation of contaminated environments. Biotechnol. Genet. Eng. Rev. 2006, 23:175-207.
21. Weyens N., van der Lelie D., Taghavi S., Vangronsveld J. Phytoremediation: plant-endophyte partnerships take the challenge. Curr. Opin. Biotechnol. 2009, 20:1-7.
22. D. van der Lelie, D. Haene, S. Dowling, D.N. Karlson, U. Moore, E.R.B. Taghavi, S. Trapp, J. Vangronsveld, Methods of improving phytoremediation treatment of contaminated medium, Application No. 60/291, 344, US Patent Office, 2001.
23. Newman L., Reynolds C. Bacteria and phyto-remediation: new uses for endophytic bacteria in plants. Trends Biotechnol. 2005, 23:6-8.
24. Germaine K., Liu X., Cabellos G., Hogan J., Ryan D., Dowling D.N. Bacterial endophyte-enhanced phyto-remediation of the organochlorine herbicide 2,4-dichlorophenoxyacetic acid. FEMS Microbiol. Ecol. 2006, 57:302-310.
25. Ryan R.P., Ryan D.J., Sun Y.C., Li F.M., Wang Y., Dowling D.N. An acquired efflux system is responsible for copper resistance in Xanthomonas strain IG-8 isolated from China. FEMS Microbiol. Lett. 2007, 268:40-46.
26. Bisht S., Pandey P., Sood A., Sharma S., Bisht N.S. Biodegradation of anthracene and naphthalene by chemotactically active rhizobacteria of Populus deltoids. Braz. J. Microbiol. 2010, 41:922-930.
27. Heinonsalo J., Jorgensen K.S., Haahtela K., Sen R. Effects of Pinus sylvestris root growth and mycorrhizosphere development on bacterial carbon source utilization and hydrocarbon oxidation in forest and petroleum contaminated soils. Can. J. Microbiol. 2000, 46(5):451-464.
28. Mueller J.G., Devereux R., Santavy D.L., Lantz S.E., Willis S.G., Pritchard P.H. Phylogenetic and physiological comparisons of PAH-degrading bacteria fromgeographically diverse soils. Antonie Van Leeuwenhoek 1997, 71(4):329-343.
29. Gang X., Dean G., Doty S.L. Characterization of three endophytic, indole-3-acetic acid producing yeasts occurring in Populus trees. Mycol. Res. 2009, 113:973-980.
30. Cho J.C., Kim S.J. Detection of mega plasmid from poly cyclic aromatic hydrocarbon degrading Sphingomonas sp. Strain K14. J.Mol. Microbiol. Biotechnol. 2001, 3(4):503-506.
31. Nwanna I.M., George O.G., Olusoji I.M. Growth study on chrysene degraders isolated from polycyclic aromatic hydrocarbon polluted soils in Nigeria. African J. Biotechnol. 2006, 5(10):823-828.
32. Na K.S., Kuroda A., Takiguchi N., Ikeda T., Ohtake H., Kato J. Isolation and characterization of benzene tolerant Rhodococcus opacus strains. J.Biosci. Bioeng. 2005, 99(4):378-382.
33. Rodriguez A.H., Perez M.Y., Guerrero Y.A., Valle M.G.V., Lauzardo A.N.N.H. Antagonistic activity of Cuban native rhizobacteria against Fusarium verticilides (Sacc.) Nirenb. in maize (Zea-mays L. Appl. Soil Ecol. 2008, 39:180-186.
34. Kumar V., Narula N. Solubilization of inorganic phosphates by Azotobacter chroococcum mutants and their effect on seed emergence of wheat. Biol. Fertil. Soils 1999, 28:301-305.
35. Pandey A., Trivedi P., Kumar B., Palni L.M.S. Characterization of a phosphate solubilizing and antagonistic strain of Pseudomonas putida (B0) isolated from a sub-Alpine location in the Indian central Himalayas. Curr. Microbiol. 1996, 53:102-107.
36. Miller R.L., Higgins B.B. Association of cyanide with infection of birds foot trefoil by Stemphylium loti. Phytopathology 1970, 60:104-110.
37. Schwyn B., Neilands J.B. Universal assay for the detection and determination of siderophores. Anal. Biochem. 1987, 160:47-56.
38. Honma M., Shimomura T. Metabolism of 1-aminocyclopropane-1-carboxylic acid. Agric. Biol. Chem. 1978, 42:1825-1831.
39. Verma S., Kumar V., Narula N., Merbach W. Studies on invitro production of antimicrobial substances by Azotobacter chroococcum isolates/mutants. J.Plant Dis. Prot. 2001, 108(2):152-165.
40. Walczak M., Donderski W., Mudryk Z., Skorczewski P. Aromatic hydrocarbons decomposition by neustonic bacteria biodegradation. Pol. J. Environ. Stud. 2001, 10(1):33-36.
41. Zhang Y., Miller R.M. Effect of Pseudomonas rhamnolipid biosurfactant on cell hydrophobicity and biodegradation of octadecane. Appl. Environ. Microbiol. 1994, 60:2101-2106.
42. El-Sheikh E.A.E., Wood M. Rhizobia and bradyrhizobia under salt stress: possible role of trehalose in osmoregulation. Lett. Appl. Microbiol. 1990, 10:27-129.
43. Bauer A.W., Kirby W.M.M., Sheris J.C., Turck M. Antibiotic susceptibility by standardized single disc method. Am. J. Clin. Pathol. 1966, 45:493-496.
44. Sambrook J., Russel D.W. Rapid isolation of yeast DNA. Molecular Cloning, a Laboratory Manual 2001, 631-632. Cold Spring Harbor Laboratory, New York. J. Sambrook, D.W. Russel (Eds.).
45. Weisberg W.G., Barns S.M., Pelletier D.A., Lane D.J. 16S Ribosomal DNA amplification for phylogenetic study. J.Bacteriol. 1991, 173:697-703.
46. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zang I., Miller W., Lipmann D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res. 1997, 25(17):3389-3402.
47. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
48. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
49. Shim H., Chauhan S., Ryoo D., Bowers K., Thomas S.M., Canada K.A., Burken J.G., Wood T.K. Rhizosphere competitiveness of trichloroethylene-degrading, poplar-colonizing recombinant bacteria. Appl. Environ. Microbiol. 2000, 66(11):4673-4678.
50. Nautiyal C.S. Selection of Chickpea-rhizosphere-competent Pseudomonas. fluorescens NBRI1303 antagonistic to Fusarium oxysporum f. sp. ciceri, Rhizoctonia bataticola and Pythium sp. Curr. Microbiol. 1997, 35:52-58.
51. Gao Y.Z., Zhu L.H. Plant uptake, accumulation and translocation of phenanthrene and pyrene in soils. Chemosphere 2004, 55:1169-1178.
52. Filonov A.E., Puntus I.F., Karpov A.V., Kosheleva I.A., Akhmetov L.I., Yonge D.R., Petersen J.N., Boronin A.M. Assessment of naphthalene biodegradation efficiency of Pseudomonas and Burkholderia strains tested in soil model systems. J.Chem. Technol. Biotechnol. 2006, 81:216-224.
53. Holt J.G., Krieg N.R., Sneathm P.H.A., Staley J.T., Williams S.T. Bergey's Manual of Determinative Bacteriology 1994, Williams and Williams, Baltimore, MD. ninth ed.
54. Doty S.L., Dosher M.R., Singleton G.L., Moore A.L., Van Aken B., Stettler R.F., Strand S.E., Gordon M.P. Identification of an endophytic Rhizobium in stems of Populus. Symbiosis 2005, 39:27-36.
55. Siciliano S.D., Fortin N., Mihoc A., Wisse G., Labelle S., Beaumier D. Selection of specific endophytic bacterial genotypes by plants in response to soil contamination. Appl. Environ. Microbiol. 2002, 67:2469-2475.
56. Bacilio-Jimeâneza M., Aguilar-Floresc S., Del Valled M.V., Peâreze A., Zepedae A., Zentenof E. Endophytic bacteria in rice seeds inhibit early colonization of roots by Azospirillum brasilense. Soil Biol. Biochem. 2001, 33:167-172.
57. Priha O., Grayston S.J., Hiukka R., Pennanen T., Smolander A. Microbial community structure and characteristics of the organic matter in soils under Pinus sylvestris, Picea abies and Betula pendula at two forest sites. Biol. Fertil. Soils 2001, 33:17-24.
58. Siciliano S.D., Germida J.J., Banks K., Greer C.W. Changes in microbial community composition and function during a polyaromatic hydrocarbon phytoremediation field trial. Appl. Environ. Microbiol. 2003, 69:483-489.
59. Kieran G., Elaine K., Guiomar G.C., Brigitte B., Daniel V.L., Tanja B., Licy O., Jaco V., Fiona P.M., Edward R.B., Colin D.C., David R., Dowling D.N. Colonization of poplar trees by gfp expressing bacterial endophytes. FEMS Microbiol. Ecol. 2004, 48:109-118.
60. Ahmad F., Ahmad I., Khan M.S. Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities. Microbiol. Res. 2008, 163:173-181.
61. Khan M.S., Zaidi A., Aamil M. Biocontrol of fungal pathogens by the use of plant growth promoting rhizobacteria and nitrogen fixing microorganisms. Indian J. Bot. Soc. 2002, 81:255-263.
62. Wani P.A., Khan M.S., Zaidi A. Chromium reducing and plant growth promoting Mesorhizobium improves chickpea growth in chromium amended soil. Biotechnol. Lett. 2008, 30:159-163.
63. Xiafang S., Xiaobing C., Linyan H. Characteristics of an endophytic pyrene-degrading bacterium of Enterobacter sp. 12J1 from Allium macrostemon Bunge. Int. Biodeterior. Biodegrad. 2008, 62:88-95.
64. Siddiqui Z.A. PGPR: prospective biocontrol agents of plant pathogens. PGPR: Biocontrol and Biofertilization 2005, 111-142. Springer, Dordrecht, Netherlands (Z.A. Siddiqui (Ed.).
65. Buard G.I., Dixon D.G., Glick B.R. Plant growth promoting bacteria that decrease heavy metal toxicity in plants. Can. J. Microbiol. 2000, 46:237-245.
66. Glick B.R. Phytoremediation: synergistic use of plants and bacteria to clean up the environment. Biotechnol. Adv. 2001, 21:383-393.
67. Byrd J.J., Xu H.S. Viable but non-culturable bacteria in drinking water. Appl. Environ. Microbiol. 1999, 57:875-878.
68. Sziderics A.H., Rasche F., Trognitz F., Sessitsch A., Wilhelm E. Bacterial endophyte contributes to abiotic stress adaptation in pepper plants (Capsicum annum L.). Can. J. Microbiol. 2007, 53:1195-1202.
69. Mulder H., Breure A.M., Van-Andel J.G., Grotenhuis J.T.C., Rulkens W.H. Influence of hydrodynamic conditions on naphthalene dissolution and subsequent biodegradation. Biotechnol. Bioeng. 1998, 57:145-154.
70. Wick L.Y., Colangelo T., Harms H. Kinetics of mass transfer limited bacterial growth on solid PAHs. Environ. Sci. Technol. 2001, 35:354-361.
71. Barac T., Taghavi S., Borremans B., Provoost A., Oeyen L., Colpaert J.J., Vangronsveld V., Der D.L. Engineered endophytic bacteria improve phytoremediation of water-soluble, volatile, organic pollutants. Nat. Biotechnol. 2004, 22:583-588.
72. Kaczorek E., Moszyńska S., Olszanowsk A. Modification of cell surface properties of Pseudomonas alcaligenes S22 during hydrocarbon biodegradation. Biodegradation 2011, 22:359-366.
73. Kuiper E.L., Lagendijk G.V., Lugtenberg B. Rhizoremediation: a beneficial plant microbe interaction. Mol. Plant Microbe Interact. 2004, 17:6-15.
74. Chaudhry Q., Blom-Zandstra M., Gupta S., Joner E.J. Utilizing the synergy between plants and rhizosphere microorganisms to enhance breakdown of organic pollutants in the environment. Environ. Sci. Pollut. Res. 2005, 12:34-48.
75. Zhuang X., Chen J., Shim H., Bai Z. New advances in plant growth-promoting rhizobacteria for bioremediation. Environ. Int. 2007, 33:406-413.
76. Maoa J., Luoa Y., Tenga Y., Lia Z. Bioremediation of polycyclic aromatic hydrocarbon-contaminated soil by a bacterial consortium and associated microbial community changes. Int. Biodeterior. Biodegrad. 2012, 70:141-147.