Utilization of atmospheric ammonia by an extremely oligotrophic bacterium, Rhodococcus erythropolis N9T-4

Journal of Bioscience and Bioengineering

Volumn 117, Issue 1, 2014, Pages 28-32

  Yoshida, Nobuyuki ^a   Inaba, Satoshi ^a   Takagi, Hiroshi ^a  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

Ammonia; AmtB; Nitrogen metabolism; Oligotroph; Rhodococcus erythropolis; Transporter

Indexed keywords

AMTB; NITROGEN METABOLISM; OLIGOTROPH; RHODOCOCCUS ERYTHROPOLIS; TRANSPORTER;

AMMONIA; BACTERIA; CARBON; CARBON DIOXIDE; GENE ENCODING; SILICA GEL; VAPORS;

NITROGEN;

AMMONIA; BACTERIAL ENZYME; GLUTAMATE AMMONIA LIGASE; GLUTAMATE DEHYDROGENASE; GLUTAMATE SYNTHASE; NITRATE; NITRITE REDUCTASE; NITROGEN; NITROGENASE; BACTERIAL DNA; BACTERIAL PROTEIN; CATION TRANSPORT PROTEIN;

ARTICLE; ATMOSPHERE; BACTERIAL CELL; BACTERIAL GROWTH; CARBON SOURCE; CELL GROWTH; DNA MICROARRAY; ENERGY RESOURCE; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE EXPRESSION; NITROGEN METABOLISM; NONHUMAN; RHODOCOCCUS ERYTHROPOLIS; CHEMISTRY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; OXIDATION REDUCTION REACTION; POLYMERASE CHAIN REACTION; RHODOCOCCUS;

BACTERIA (MICROORGANISMS); OLIGOTROPHIC BACTERIUM; RHODOCOCCUS ERYTHROPOLIS;

AMMONIA; ATMOSPHERE; BACTERIAL PROTEINS; CATION TRANSPORT PROTEINS; DNA, BACTERIAL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; NITROGEN; NITROGENASE; OXIDATION-REDUCTION; POLYMERASE CHAIN REACTION; RHODOCOCCUS;

EID: 84890124837     PISSN: 13891723     EISSN: 13474421     Source Type: Journal    
DOI: 10.1016/j.jbiosc.2013.06.005     Document Type: Article

References (17)

1. Kuznetsov S.I., Dubinina G.A., Lapteva N.A. Biology of oligotrophic bacteria. Annu. Rev. Microbiol. 1979, 33:377-387.
2. Yoshida N., Yagi K., Sato D., Watanabe N., Kuroishi T., Nishimoto K., Yanagida A., Katsuragi T., Kanagawa T., Kurane R., Tani Y. Bacterial communities in petroleum oil in stockpiles. J.Biosci. Bioeng. 2005, 99:143-149.
3. Ohhata N., Yoshida N., Egami H., Katsuragi T., Tani Y., Takagi H. An extremely oligotrophic bacterium, Rhodococcus erythropolis N9T-4 isolated from crude oil. J.Bacteriol. 2007, 189:6824-6831.
4. Yoshida N., Ohhata N., Yoshino Y., Katsuragi T., Tani Y., Takagi H. Screening of carbon dioxide-requiring extreme oligotrophs from soil. Biosci. Biotechnol. Biochem. 2007, 71:2830-2832.
5. 2 fixation pathways. Appl. Environ. Microbiol. 2011, 77:1925-1936.
6. Yoshida N., Hayasaki T., Takagi H. Gene expression analysis of methylotrophic oxidoreductases involved in the oligotrophic growth of Rhodococcus erythropolis N9T-4. Biosci. Biotechnol. Biochem. 2011, 75:123-127.
7. Bystrykh L.V., Govorukhina N.I., Van Ophem P.W., Hektor H.J., Dijkhuizen L., Duine J.A. Formaldehyde dismutase activities in gram-positive bacteria oxidizing methanol. J.Gen. Microbiol. 1993, 139:1979-1985.
8. Yano T., Yoshida N., Takagi H. Carbon monoxide utilization of an extremely oligotrophic bacterium, Rhodococcus erythropolis N9T-4. J.Biosci. Bioeng. 2012, 586:53-55.
9. Radwan S., Mahmoud H., Khanafer M., Al-Habib A., Al-Hasan R. Identities of epilithic hydrocarbon-utilizing diazotrophic bacteria from the Arabian gulf coasts, and their potential for oil bioremediation without nitrogen supplementation. Microb. Ecol. 2010, 60:354-363.
10. Schäfer A., Tauch A., Jäger W., Kalinowski J., Thierbach G., Pühler A. Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 1994, 145:69-73.
11. Sallam K.I., Mitani Y., Tamura T. Construction of random transposition mutagenesis system in Rhodococcus erythropolis using IS1415. J.Biotechnol. 2006, 121:13-22.
12. Pei Y., Nicholson V., Woods K., Prescott J.F. Immunization by intrabronchial administration to 1-week-old foals of unmarked double gene disruption strain of Rhodococcus equi strain 103+. Vet. Microbiol. 2007, 125:100-110.
13. Leigh J.A., Dodsworth J.A. Nitrogen regulation in bacteria and archaea. Annu. Rev. Microbiol. 2007, 61:349-377.
14. Lu N., Gao N.Y., Deng Y., Li Q.S. Nitrite formation during low pressure ultraviolet lamp irradiation of nitrate. Water Sci. Technol. 2009, 60:1393-1400.
15. Walter A., Gutknecht J. Permeability of small nonelectrolytes through lipid bilayer membranes. J.Membr. Biol. 1986, 90:207-217.
16. Matsumoto M., Ueda N., Ono H. Precise measurements of acidic and alkaline gaseous and particulate species in the atmosphere using annular denuder system. Annual Report of Nara Prefectural Institute of Public Health 1998, vol. 32:39-46. Nara Prefectural Institute of Public Health, Nara.
17. Kim M., Zhang Z., Okano H., Yan D., Groisman A., Hwa T. Need-based activation of ammonium uptake in Escherichia coli. Mol. Syst. Biol. 2012, 8:616.