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Volumn 21, Issue 24, 2013, Pages 29462-29487

Three dimensional single molecule localization using a phase retrieved pupil function

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL STRUCTURES; FITTING ALGORITHMS; GRAPHICS PROCESSING UNIT; LOCALIZATION ACCURACY; POINT-SPREAD FUNCTIONS; SINGLE-MOLECULE LOCALIZATIONS; SUPER RESOLUTION IMAGING; THREE DIMENSIONAL IMAGING;

EID: 84890076034     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.21.029462     Document Type: Article
Times cited : (71)

References (43)
  • 1
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • M. J. Rust, M. Bates, and X. Zhuang, "Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)," Nat. Methods 3, 793-796 (2006).
    • (2006) Nat. Methods , vol.3 , pp. 793-796
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 3
    • 33845360042 scopus 로고    scopus 로고
    • Ultra-high resolution imaging by fluorescence photoactivation localization microscopy
    • S. T. Hess, T. P. K. Girirajan, and M. D. Mason, "Ultra-high resolution imaging by fluorescence photoactivation localization microscopy," Biophys. J. 91, 4258-4272 (2006).
    • (2006) Biophys. J. , vol.91 , pp. 4258-4272
    • Hess, S.T.1    Girirajan, T.P.K.2    Mason, M.D.3
  • 5
    • 38949147781 scopus 로고    scopus 로고
    • Fluorescence nanoscopy with optical sectioning by two-photon induced molecular switching using continuous-wave lasers
    • J. Fölling, V. Belov, D. Riedel, A. Schönle, A. Egner, C. Eggeling, M. Bossi, and S. W. Hell, "Fluorescence Nanoscopy with Optical Sectioning by Two-Photon Induced Molecular Switching using Continuous-Wave Lasers," Chem. Phys. Chem 9, 321-326 (2008).
    • (2008) Chem. Phys. Chem , vol.9 , pp. 321-326
    • Fölling, J.1    Belov, V.2    Riedel, D.3    Schönle, A.4    Egner, A.5    Eggeling, C.6    Bossi, M.7    Hell, S.W.8
  • 7
    • 78649686697 scopus 로고    scopus 로고
    • Accuracy of the gaussian point spread function model in 2D localization microscopy
    • S. Stallinga and B. Rieger, "Accuracy of the gaussian point spread function model in 2D localization microscopy," Opt. Express 18, 24461-24476 (2010).
    • (2010) Opt. Express , vol.18 , pp. 24461-24476
    • Stallinga, S.1    Rieger, B.2
  • 9
    • 58749095862 scopus 로고    scopus 로고
    • High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells
    • S. Ram, P. Prabhat, J. Chao, E. S.Ward, and R. J. Ober, "High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells," Biophys. J. 95, 6025-6043 (2008).
    • (2008) Biophys. J. , vol.95 , pp. 6025-6043
    • Ram, S.1    Prabhat, P.2    Chao, J.3    Ward, E.S.4    Ober, R.J.5
  • 10
    • 38949216802 scopus 로고    scopus 로고
    • Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy
    • B. Huang, W. Wang, M. Bates, and X. Zhuang, "Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy," Science 319, 810-813 (2008).
    • (2008) Science , vol.319 , pp. 810-813
    • Huang, B.1    Wang, W.2    Bates, M.3    Zhuang, X.4
  • 11
    • 62649175269 scopus 로고    scopus 로고
    • Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function
    • S. R. P. Pavani, M. A. Thompson, J. S. Biteen, S. J. Lord, N. Liu, R. J. Twieg, R. Piestun, and W. E. Moerner, "Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function," Proc. Natl. Acad. Sci. USA. 106, 2995-2999 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA. , vol.106 , pp. 2995-2999
    • Pavani, S.R.P.1    Thompson, M.A.2    Biteen, J.S.3    Lord, S.J.4    Liu, N.5    Twieg, R.J.6    Piestun, R.7    Moerner, W.E.8
  • 12
    • 84870953047 scopus 로고    scopus 로고
    • 3-D PSF fitting for fluorescence microscopy: Implementation and localization application
    • H. Kirshner, F. Aguet, D. Sage, and D. Unser, "3-D PSF fitting for fluorescence microscopy: implementation and localization application," J. Microsc. 249, 13-25 (2012).
    • (2012) J. Microsc. , vol.249 , pp. 13-25
    • Kirshner, H.1    Aguet, F.2    Sage, D.3    Unser, D.4
  • 13
    • 66449129815 scopus 로고    scopus 로고
    • Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy
    • M. J. Mlodzianoski, M. F. Juette, G. L. Beane, and J. Bewersdorf, "Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy," Opt. Express 17, 8264-8277 (2009).
    • (2009) Opt. Express , vol.17 , pp. 8264-8277
    • Mlodzianoski, M.J.1    Juette, M.F.2    Beane, G.L.3    Bewersdorf, J.4
  • 14
    • 79953289031 scopus 로고    scopus 로고
    • Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes
    • A. G. York, A. Ghitani, A. Vaziri, M. W. Davidson, and H. Shroff, "Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes," Nat. Methods 8, 327-333 (2011).
    • (2011) Nat. Methods , vol.8 , pp. 327-333
    • York, A.G.1    Ghitani, A.2    Vaziri, A.3    Davidson, M.W.4    Shroff, H.5
  • 15
    • 34547611047 scopus 로고    scopus 로고
    • Three-dimensional particle tracking via bifocal imaging
    • E. Toprak, H. Balci, B. H. Blehm, and P. R. Selvin, "Three- dimensional particle tracking via bifocal imaging," Nano Lett. 7, 2043-2045 (2007)
    • (2007) Nano Lett , vol.7 , pp. 2043-2045
    • Toprak, E.1    Balci, H.2    Blehm, B.H.3    Selvin, P.R.4
  • 16
    • 77952215650 scopus 로고    scopus 로고
    • Optimized localization analysis for singlemolecule tracking and super-resolution microscopy
    • K. I. Mortensen, L. S. Churchman, J. A. Spudich, and H. Flyvbjerg, "Optimized localization analysis for singlemolecule tracking and super-resolution microscopy," Nat. Methods 7, 377-381 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 377-381
    • Mortensen, K.I.1    Churchman, L.S.2    Spudich, J.A.3    Flyvbjerg, H.4
  • 17
    • 0001106323 scopus 로고
    • Electromagnetic diffraction in optical systems. II. Structure of the image field in an aplanatic system
    • B. Richards and E. Wolf, "Electromagnetic diffraction in optical systems. II. structure of the image field in an aplanatic system," Proc. R. Soc. Lond. A Math. Phys. Sci. 253, 358-379 (1959).
    • (1959) Proc. R. Soc. Lond. A Math. Phys. Sci. , vol.253 , pp. 358-379
    • Richards, B.1    Wolf, E.2
  • 18
    • 0037572308 scopus 로고    scopus 로고
    • Phase retrieval for high-numerical-aperture optical systems
    • B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, "Phase retrieval for high-numerical-aperture optical systems," Opt. Lett. 28, 801-803 (2003).
    • (2003) Opt. Lett. , vol.28 , pp. 801-803
    • Hanser, B.M.1    Gustafsson, M.G.L.2    Agard, D.A.3    Sedat, J.W.4
  • 19
    • 4744366699 scopus 로고    scopus 로고
    • Phase-retrieved pupil functions in wide-field fluorescence microscopy
    • B. M. Hanser, M. G. L. Gustafsson, D. A. Agard, and J. W. Sedat, "Phase-retrieved pupil functions in wide-field fluorescence microscopy," J. Microsc. 216, 32-48 (2004).
    • (2004) J. Microsc. , vol.216 , pp. 32-48
    • Hanser, B.M.1    Gustafsson, M.G.L.2    Agard, D.A.3    Sedat, J.W.4
  • 20
    • 84863689159 scopus 로고    scopus 로고
    • Quantitative pupil analysis in sted microscopy using phase retrieval
    • E. B. Kromann, T. J. Gould, M. F. Juette, J. E. Wilhjelm, and J. Bewersdorf, "Quantitative Pupil Analysis in STED Microscopy Using Phase Retrieval," Opt. Lett. 37, 1805-1807 (2012).
    • (2012) Opt. Lett. , vol.37 , pp. 1805-1807
    • Kromann, E.B.1    Gould, T.J.2    Juette, M.F.3    Wilhjelm, J.E.4    Bewersdorf, J.5
  • 21
    • 84878989404 scopus 로고    scopus 로고
    • Phase-retrieved pupil function and coherent transfer function in confocal microscopy
    • M. R. Foreman, C. L. Giusca, P. Török, and R. K. Leach, "Phase-retrieved pupil function and coherent transfer function in confocal microscopy,"J. Microsc. 251, 99-107 (2013).
    • (2013) J. Microsc. , vol.251 , pp. 99-107
    • Foreman, M.R.1    Giusca, C.L.2    Török, P.3    Leach, R.K.4
  • 22
    • 84856386755 scopus 로고    scopus 로고
    • Optimal 3D single-molecule localization for superresolution microscopy with aberrations and engineered point spread functions
    • S. Quirin, S. R. P. Pavani, and R. Piestun, "Optimal 3D single-molecule localization for superresolution microscopy with aberrations and engineered point spread functions," Proc. Natl. Acad. Sci. USA. 109, 675-679 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA. , vol.109 , pp. 675-679
    • Quirin, S.1    Pavani, S.R.P.2    Piestun, R.3
  • 23
    • 33750309885 scopus 로고    scopus 로고
    • Third Edition (Roberts & Company Publishers
    • J.W. Goodman, Introduction to Fourier Optics, Third Edition (Roberts & Company Publishers, 2005), pp.31-50.
    • (2005) Introduction to Fourier Optics , pp. 31-50
    • Goodman, J.W.1
  • 24
    • 0015327061 scopus 로고
    • A practical algorithm for the determination of the phase from image and diffraction plane pictures
    • R. W. Gerchberg and W. O. Saxton, "A practical algorithm for the determination of the phase from image and diffraction plane pictures," Optik 35, 237-246 (1972).
    • (1972) Optik , vol.35 , pp. 237-246
    • Gerchberg, R.W.1    Saxton, W.O.2
  • 25
    • 0011060250 scopus 로고
    • Basic wavefront aberration theory for optical metrology
    • Academic Press
    • J. C. Wyant and K. Creath, "Basic wavefront aberration theory for optical metrology," in Applied Optics and Optical Engineering, VOL. XI (Academic Press, 1992), pp.27-39.
    • (1992) Applied Optics and Optical Engineering , vol.11 , pp. 27-39
    • Wyant, J.C.1    Creath, K.2
  • 26
    • 0036765114 scopus 로고    scopus 로고
    • Monte Carlo methods in geophysical inverse problems
    • M. Sambridge and K. Mosegaard, "Monte Carlo methods in geophysical inverse problems," Reviews of Geophysics 40, 1-29 (2002).
    • (2002) Reviews of Geophysics , vol.40 , pp. 1-29
    • Sambridge, M.1    Mosegaard, K.2
  • 27
    • 84950590103 scopus 로고
    • Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy
    • S. F. Gibson and F. Lanni, "Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy," J. Opt. Soc. Am. A 19, 1601-1613 (1991)
    • (1991) J. Opt. Soc. Am. A , vol.19 , pp. 1601-1613
    • Gibson, S.F.1    Lanni, F.2
  • 28
    • 84863860300 scopus 로고    scopus 로고
    • Fluorescence excitation and imaging of single molecules near dielectric coated and bare surfaces: A theoretical study
    • D. Axelrod, "Fluorescence excitation and imaging of single molecules near dielectric coated and bare surfaces: a theoretical study," J. Microsc. 247, 147-160 (2012).
    • (2012) J. Microsc. , vol.247 , pp. 147-160
    • Axelrod, D.1
  • 29
    • 84875879502 scopus 로고    scopus 로고
    • Evanescent excitation and emission in fluorescence microscopy
    • D. Axelrod, "Evanescent Excitation and Emission in Fluorescence Microscopy," Biophys. J. 7, 1401-1409 (2013).
    • (2013) Biophys. J. , vol.7 , pp. 1401-1409
    • Axelrod, D.1
  • 30
    • 0001356789 scopus 로고    scopus 로고
    • Highly efficient optical detection of surface-generated fluorescence
    • J. Enderlein, T. Ruckstuhl, and S. Seeger, "Highly efficient optical detection of surface-generated fluorescence," Appl. Opt. 38, 724-732 (1999).
    • (1999) Appl. Opt. , vol.38 , pp. 724-732
    • Enderlein, J.1    Ruckstuhl, T.2    Seeger, S.3
  • 31
    • 79955376305 scopus 로고    scopus 로고
    • Imaging properties of supercritical angle fluorescence optics
    • J. Enderlein, I. Gregor, and T. Ruckstuhl, "Imaging properties of supercritical angle fluorescence optics," Opt. Express 19, 8011-8018 (2011).
    • (2011) Opt. Express , vol.19 , pp. 8011-8018
    • Enderlein, J.1    Gregor, I.2    Ruckstuhl, T.3
  • 32
    • 14844324001 scopus 로고    scopus 로고
    • Compact description of substrate-related aberrations in high numerical-aperture optical disk readout
    • S. Stallinga, "Compact description of substrate-related aberrations in high numerical-aperture optical disk readout," Appl. Opt. 44, 849-858 (2005).
    • (2005) Appl. Opt. , vol.44 , pp. 849-858
    • Stallinga, S.1
  • 33
    • 57049139281 scopus 로고    scopus 로고
    • Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution
    • B. Huang, S. A. Jones, B. Brandenburg, and X. Zhuang, "Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution," Nat. Methods 5, 1047-1052 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 1047-1052
    • Huang, B.1    Jones, S.A.2    Brandenburg, B.3    Zhuang, X.4
  • 35
    • 77952216273 scopus 로고    scopus 로고
    • Fast, single-molecule localization that achieves theoretically minimum uncertainty
    • C. S. Smith, N. Joseph, B. Rieger, and K. A. Lidke, "Fast, single-molecule localization that achieves theoretically minimum uncertainty," Nat. Methods 7, 373-375 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 373-375
    • Smith, C.S.1    Joseph, N.2    Rieger, B.3    Lidke, K.A.4
  • 36
    • 80052253107 scopus 로고    scopus 로고
    • Simultaneous multiple-emitter fitting for single molecule super-resolution imaging
    • F. Huang, S. L. Schwartz, J. M. Byars, and K. A. Lidke, "Simultaneous multiple-emitter fitting for single molecule super-resolution imaging," Biomed. Opt. Express 2, 1377-1393 (2011).
    • (2011) Biomed. Opt. Express , vol.2 , pp. 1377-1393
    • Huang, F.1    Schwartz, S.L.2    Byars, J.M.3    Lidke, K.A.4
  • 37
    • 29244439892 scopus 로고    scopus 로고
    • A maximum-likelihood formalism for sub-resolution axial localization of fluorescent nanoparticles
    • F. Aguet, D. Van De Ville, and M. Unser, "A maximum-likelihood formalism for sub-resolution axial localization of fluorescent nanoparticles," Opt. Express 13, 10503-10522 (2005).
    • (2005) Opt. Express , vol.13 , pp. 10503-10522
    • Aguet, F.1    Ville De D.Van2    Unser, M.3
  • 38
    • 78449299706 scopus 로고    scopus 로고
    • Three-dimensional tracking of single fluorescent particles with submillisecond temporal resolution
    • M. F. Juette and J. Bewersdorf, "Three-dimensional tracking of single fluorescent particles with submillisecond temporal resolution," Nano Lett. 10, 4657-4663 (2010).
    • (2010) Nano Lett. , vol.10 , pp. 4657-4663
    • Juette, M.F.1    Bewersdorf, J.2
  • 39
    • 26444610684 scopus 로고    scopus 로고
    • The role of photon statistics in fluorescence anisotropy imaging
    • K. A. Lidke, B. Rieger, D. S. Lidke, and T. M. Jovin, "The role of photon statistics in fluorescence anisotropy imaging," IEEE T. Image Process. 14, 1237-1245 (2005).
    • (2005) IEEE T. Image Process. , vol.14 , pp. 1237-1245
    • Lidke, K.A.1    Rieger, B.2    Lidke, D.S.3    Jovin, T.M.4
  • 42
    • 34247344904 scopus 로고    scopus 로고
    • A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking
    • S. Ram, J. Chao, P. Prabhat, E. S. Ward, and R. J. Ober, "A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking," Proc. SPIE 6443, D295-D300 (2007).
    • (2007) Proc. SPIE , vol.6443
    • Ram, S.1    Chao, J.2    Prabhat, P.3    Ward, E.S.4    Ober, R.J.5


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