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Volumn 12, Issue 12, 2013, Pages 5609-5615

Analysis of N-glycoproteins using genomic N-glycosite prediction

Author keywords

accurate mass matching; genome wide; glycosite prediction; glycosylation; mass spectrometry; ovarian cancer; SILAC

Indexed keywords

GLYCOPROTEIN;

EID: 84890020874     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400575f     Document Type: Article
Times cited : (8)

References (31)
  • 2
    • 0027519943 scopus 로고
    • Protein glycosylation
    • Lis, H.; Sharon, N. Protein glycosylation Eur. J. Biochem. 1993, 218, 1-27
    • (1993) Eur. J. Biochem. , vol.218 , pp. 1-27
    • Lis, H.1    Sharon, N.2
  • 3
    • 77951930076 scopus 로고    scopus 로고
    • Glycoproteomics and clinical applications
    • Tian, Y.; Zhang, H. Glycoproteomics and clinical applications Proteom. Clin. Appl. 2010, 4, 124-132
    • (2010) Proteom. Clin. Appl. , vol.4 , pp. 124-132
    • Tian, Y.1    Zhang, H.2
  • 4
  • 5
    • 79960872741 scopus 로고    scopus 로고
    • Glycosylation site alteration in the evolution of influenza A (H1N1) viruses
    • e22844
    • Sun, S.; Wang, Q.; Zhao, F.; Chen, W.; Li, Z. Glycosylation site alteration in the evolution of influenza A (H1N1) viruses PLoS One 2011, 6 e22844
    • (2011) PLoS One , vol.6
    • Sun, S.1    Wang, Q.2    Zhao, F.3    Chen, W.4    Li, Z.5
  • 6
    • 33748195979 scopus 로고    scopus 로고
    • Glycosylation in cellular mechanisms of health and disease
    • Ohtsubo, K.; Marth, J. D. Glycosylation in cellular mechanisms of health and disease Cell 2006, 126, 855-867
    • (2006) Cell , vol.126 , pp. 855-867
    • Ohtsubo, K.1    Marth, J.D.2
  • 7
    • 0034131162 scopus 로고    scopus 로고
    • Protein glycosylation and diseases: Blood and urinary oligosaccharides as markers for diagnosis and therapeutic monitoring
    • Durand, G.; Seta, N. Protein glycosylation and diseases: Blood and urinary oligosaccharides as markers for diagnosis and therapeutic monitoring Clin. Chem. 2000, 46, 795-805
    • (2000) Clin. Chem. , vol.46 , pp. 795-805
    • Durand, G.1    Seta, N.2
  • 8
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold, R.; Mann, M. Mass spectrometry-based proteomics Nature 2003, 422, 198-207
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 10
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags Nat. Biotechnol. 1999, 17, 994-999
    • (1999) Nat. Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 12
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S.-E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics Mol. Cell. Proteomics 2002, 1, 376-386
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.-E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 13
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J.; McCormack, A.; Yates, J. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J. Am. Soc. Mass Spectrom. 1994, 5, 976-989
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.1    McCormack, A.2    Yates, J.3
  • 14
    • 0344737959 scopus 로고    scopus 로고
    • Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry
    • Li, X.-j.; Zhang, H.; Ranish, J. A.; Aebersold, R. Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry Anal. Chem. 2003, 75, 6648-6657
    • (2003) Anal. Chem. , vol.75 , pp. 6648-6657
    • Li, X.-J.1    Zhang, H.2    Ranish, J.A.3    Aebersold, R.4
  • 15
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N.; Pappin, D. J. C.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20, 3551-3567
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 17
    • 33646264529 scopus 로고    scopus 로고
    • Advances in proteomics data analysis and display using an accurate mass and time tag approach
    • Zimmer, J. S. D.; Monroe, M. E.; Qian, W.-J.; Smith, R. D. Advances in proteomics data analysis and display using an accurate mass and time tag approach Mass Spectrom. Rev. 2006, 25, 450-482
    • (2006) Mass Spectrom. Rev. , vol.25 , pp. 450-482
    • Zimmer, J.S.D.1    Monroe, M.E.2    Qian, W.-J.3    Smith, R.D.4
  • 18
    • 0038699625 scopus 로고    scopus 로고
    • Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
    • Zhang, H.; Li, X.-j.; Martin, D. B.; Aebersold, R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry Nat. Biotechnol. 2003, 21, 660-666
    • (2003) Nat. Biotechnol. , vol.21 , pp. 660-666
    • Zhang, H.1    Li, X.-J.2    Martin, D.B.3    Aebersold, R.4
  • 20
    • 0020713174 scopus 로고
    • Structural requirements of N-glycosylation of proteins. Studies with proline peptides as conformational probes
    • Bause, E. Structural requirements of N-glycosylation of proteins. Studies with proline peptides as conformational probes Biochem. J. 1983, 209, 331-336
    • (1983) Biochem. J. , vol.209 , pp. 331-336
    • Bause, E.1
  • 22
    • 18744375196 scopus 로고    scopus 로고
    • Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
    • Ong, S.-E.; Mittler, G.; Mann, M. Identifying and quantifying in vivo methylation sites by heavy methyl SILAC Nat. Meth. 2004, 1, 119-126
    • (2004) Nat. Meth. , vol.1 , pp. 119-126
    • Ong, S.-E.1    Mittler, G.2    Mann, M.3
  • 23
    • 77952226764 scopus 로고    scopus 로고
    • Super-SILAC mix for quantitative proteomics of human tumor tissue
    • Geiger, T.; Cox, J.; Ostasiewicz, P.; Wisniewski, J. R.; Mann, M. Super-SILAC mix for quantitative proteomics of human tumor tissue Nat. Meth. 2010, 7, 383-385
    • (2010) Nat. Meth. , vol.7 , pp. 383-385
    • Geiger, T.1    Cox, J.2    Ostasiewicz, P.3    Wisniewski, J.R.4    Mann, M.5
  • 24
    • 79961014854 scopus 로고    scopus 로고
    • Large-scale phosphosite quantification in tissues by a spike-in SILAC method
    • Monetti, M.; Nagaraj, N.; Sharma, K.; Mann, M. Large-scale phosphosite quantification in tissues by a spike-in SILAC method Nat. Meth. 2011, 8, 655-658
    • (2011) Nat. Meth. , vol.8 , pp. 655-658
    • Monetti, M.1    Nagaraj, N.2    Sharma, K.3    Mann, M.4
  • 25
    • 84871860708 scopus 로고    scopus 로고
    • Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood samples
    • Boersema, P. J.; Geiger, T.; Wiśniewski, J. R.; Mann, M. Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood samples Mol. Cell. Proteomics 2013, 12, 158-171
    • (2013) Mol. Cell. Proteomics , vol.12 , pp. 158-171
    • Boersema, P.J.1    Geiger, T.2    Wiśniewski, J.R.3    Mann, M.4
  • 27
    • 61449097424 scopus 로고    scopus 로고
    • High-efficiency labeling of sialylated glycoproteins on living cells
    • Zeng, Y.; Ramya, T. N. C.; Dirksen, A.; Dawson, P. E.; Paulson, J. C. High-efficiency labeling of sialylated glycoproteins on living cells Nat. Meth. 2009, 6, 207-209
    • (2009) Nat. Meth. , vol.6 , pp. 207-209
    • Zeng, Y.1    Ramya, T.N.C.2    Dirksen, A.3    Dawson, P.E.4    Paulson, J.C.5
  • 30
    • 0020200302 scopus 로고
    • Periodate oxidation of methionine in proteins
    • Yamasaki, R. B.; Osuga, D. T.; Feeney, R. E. Periodate oxidation of methionine in proteins Anal. Biochem. 1982, 126, 183-189
    • (1982) Anal. Biochem. , vol.126 , pp. 183-189
    • Yamasaki, R.B.1    Osuga, D.T.2    Feeney, R.E.3
  • 31
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt, K. D.; Tatusova, T.; Maglott, D. R. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins Nucleic Acids Res. 2007, 35, D61-D65
    • (2007) Nucleic Acids Res. , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.