-
1
-
-
0031743421
-
Profile hidden Markov models
-
S. Eddy, Profile hidden Markov models, Bioinformatics 14(9), 755-763, 1998.
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 755-763
-
-
Eddy, S.1
-
2
-
-
0003516147
-
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
Cambridge University Press, New York
-
R. Durbin, S. Eddy, A. Krogh, A. Mitchison, Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press, New York, 1998.
-
(1998)
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, A.4
-
3
-
-
34548407113
-
Altivec-accelerated HMM algorithms
-
E. Lindahl, Altivec-accelerated HMM algorithms, 2005. http://lindahl.sbc.su.se/.
-
(2005)
-
-
Lindahl, E.1
-
4
-
-
33845425948
-
ClawHmmer:Astreaming HMMer-search implementation. in: IEEE International Conference on High Performance
-
Computing, Networking Storage, and Analysis, Seattle
-
D.R. Horn, M. Houston, P. Hanarahan, ClawHmmer:Astreaming HMMer-search implementation. in: IEEE International Conference on High Performance, Computing, Networking Storage, and Analysis, Seattle, 2005.
-
(2005)
-
-
Horn, D.R.1
Houston, M.2
Hanarahan, P.3
-
5
-
-
33751102936
-
Accelerating Hmmer searches on Opteron processors with minimally invasive recoding, AINA'06
-
AINA'06, IEEE Computer Society,Washington, DC
-
J. Landman, J. Ray, J.P.Walters. Accelerating Hmmer searches on Opteron processors with minimally invasive recoding, AINA'06, in: Proceedings of the 20th International Conference on Advanced Information Networking and Applications, Vol. 2 (AINA'06), IEEE Computer Society,Washington, DC, pp. 628-636, 2006.
-
(2006)
Proceedings of the 20th International Conference on Advanced Information Networking and Applications
, vol.2
, pp. 628-636
-
-
Landman, J.1
Ray, J.2
Walters, J.P.3
-
6
-
-
33751092578
-
Accelerating the Hmmer sequence analysis suite using conventional processors
-
AINA'06, AINA'06, IEEE Computer Society,Washington, DC
-
J.P. Walters, B. Qudah, V. Chaudhary, Accelerating the Hmmer sequence analysis suite using conventional processors, AINA'06, in: Proceedings of the 20th International Conference on Advanced Information Networking and Applications, Vol. 1 (AINA'06), IEEE Computer Society,Washington, DC, pp. 289-294, 2006.
-
(2006)
Proceedings of the 20th International Conference on Advanced Information Networking and Applications
, vol.1
, pp. 289-294
-
-
Walters, J.P.1
Qudah, B.2
Chaudhary, V.3
-
7
-
-
84935113569
-
Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
-
A.J.Viterbi, Error bounds for convolutional codes and an asymptotically optimum decoding algorithm, IEEE Transactions on Information Theory IT-13, 260-269, 1967.
-
(1967)
IEEE Transactions on Information Theory
, vol.IT-13
, pp. 260-269
-
-
Viterbi, A.J.1
-
9
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two sequences
-
S. Needleman, C. Wunsch, A general method applicable to the search for similarities in the amino acid sequence of two sequences, Journal of Molecular Biology 48(3), 443-453, 1970.
-
(1970)
Journal of Molecular Biology
, vol.48
, Issue.3
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.2
-
10
-
-
1642330037
-
HMMER: Profile HMMs for Protein Sequence Analysis
-
S. Eddy, HMMER: Profile HMMs for Protein Sequence Analysis, 2006. http://hmmer.wustl.edu.
-
(2006)
-
-
Eddy, S.1
-
12
-
-
84889954666
-
-
TimeLogic BioComputing Solutions, DecypherHMM
-
TimeLogic BioComputing Solutions, DecypherHMM, 2006. http://www.timelogic.com/.
-
(2006)
-
-
-
13
-
-
3242891670
-
SledgeHMMER: A web server for batch searching the Pfam database
-
Web server issue
-
G. Chukkapalli, C. Guda, S. Subramaniam. SledgeHMMER: A web server for batch searching the Pfam database, Nucleic Acids Research, 32, W542-544, 2004 (Web server issue).
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Chukkapalli, G.1
Guda, C.2
Subramaniam, S.3
-
14
-
-
33747856166
-
The MPI bioinformatics toolkit for protein sequence analysis
-
Web server issue
-
A. Biegert, C. Mayer, M. Remmert, J. Soding, A. Lupas, The MPI bioinformatics toolkit for protein sequence analysis, Nucleic Acids Research 34, W335-339, 2006 (Web server issue).
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Biegert, A.1
Mayer, C.2
Remmert, M.3
Soding, J.4
Lupas, A.5
-
15
-
-
0025183708
-
Basic local alignment search tool
-
S.F. Altschul,W. Gish,W. Miller, E.W. Myers, D.J. Lipman, Basic local alignment search tool, Journal of Molecular Biology 215(3), 403-410, 1990.
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
16
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, D.J. Lipman, Gapped blast and psi-blast: A new generation of protein database search programs, Nucleic Acids Research 25(17), 3389-3402, 1997.
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
17
-
-
0027968068
-
Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
J.D. Thompson, D.G. Higgins,T.J. Gibson, Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research 22(22), 4673-4680, 1994.
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
18
-
-
3042666256
-
Muscle: Multiple sequence alignment with high accuracy and high throughput
-
R.C. Edgar, Muscle: Multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-1797, 2004.
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
19
-
-
84889984726
-
-
Argonne National Lab MPICH-A Portable Implementation of MPI
-
Argonne National Lab MPICH-A Portable Implementation of MPI, 2006. http://www-unix.mcs.anl.gov/mpi/mpich/.
-
(2006)
-
-
-
20
-
-
0030243005
-
A high-performance, portable implementation of the MPI message passing interface standard
-
W. Gropp, E. Lusk, N. Doss, A. Skjellum. A high-performance, portable implementation of the MPI message passing interface standard, Parallel Computing 22(6), 789-828, 1996.
-
(1996)
Parallel Computing
, vol.22
, Issue.6
, pp. 789-828
-
-
Gropp, W.1
Lusk, E.2
Doss, N.3
Skjellum, A.4
-
21
-
-
84990637885
-
PVM: a framework for parallel distributed computing
-
V.S. Sunderam, PVM: a framework for parallel distributed computing, Concurrency: Practice and Experience 2(4), 315-339, 1990.
-
(1990)
Concurrency: Practice and Experience
, vol.2
, Issue.4
, pp. 315-339
-
-
Sunderam, V.S.1
-
22
-
-
84889996886
-
-
J. Landman, 2006. Bbsv3.//www.scalableinformatics.com/bbs.
-
(2006)
-
-
Landman, J.1
-
23
-
-
84890003258
-
-
Intel Corporation, SSE2: Streaming SIMD (Single Instruction Multiple Data) Second Extensions
-
Intel Corporation, SSE2: Streaming SIMD (Single Instruction Multiple Data) Second Extensions, 2006a. http://www.intel.com.
-
(2006)
-
-
-
24
-
-
84889973764
-
-
Intel Corporation, MMX: MultiMedia eXtensions
-
Intel Corporation, MMX: MultiMedia eXtensions, 2006b, http://www.intel.com.
-
(2006)
-
-
-
25
-
-
84889989096
-
-
Intel Corporation, SSE3: Streaming SIMD (Single Instruction Multiple Data) Third Extensions
-
Intel Corporation, SSE3: Streaming SIMD (Single Instruction Multiple Data) Third Extensions, 2003. www.intel.com.
-
(2003)
-
-
-
26
-
-
84889974422
-
-
Pfam, The PFAM HMM library: A large collection of multiple sequence alignments and hidden Markov models covering many common protein families
-
Pfam, The PFAM HMM library: A large collection of multiple sequence alignments and hidden Markov models covering many common protein families, 2006. http://pfam.wustl.edu.
-
(2006)
-
-
-
27
-
-
84889970050
-
-
NCBI, The NR (non-redundant) database
-
NCBI, The NR (non-redundant) database, 2006. ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz.
-
(2006)
-
-
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