PhaP phasins play a principal role in poly-β-hydroxybutyrate accumulation in free-living Bradyrhizobium japonicum

BMC Microbiology

Volumn 13, Issue 1, 2013, Pages

  Yoshida, Ken Ichi ^a   Takemoto, Yuki ^a   Sotsuka, Takayuki ^a   Tanaka, Kosei ^a   Takenaka, Shinji ^a  

^a KOBE UNIVERSITY   (Japan)

Author keywords

Bradyrhizobium japonicum; Phasin; PHB

Indexed keywords

BACTERIAL PROTEIN; PHAP PHASIN; POLY(3 HYDROXYBUTYRIC ACID); UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; BRADYRHIZOBIUM JAPONICUM; CARBON SOURCE; CELL GROWTH; CONTROLLED STUDY; CULTURE MEDIUM; GENE EXPRESSION PROFILING; IN VITRO STUDY; NONHUMAN; PROTEIN DEGRADATION; PROTEIN METABOLISM; PROTEIN STABILITY; PROTEIN SYNTHESIS; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

BRADYRHIZOBIUM JAPONICUM; GLYCINE MAX;

BACTERIAL PROTEINS; BRADYRHIZOBIUM; DNA-BINDING PROTEINS; GENE EXPRESSION PROFILING; HYDROXYBUTYRATES; POLYESTERS;

EID: 84889837837     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-13-290     Document Type: Article

References (31)

1. Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates. Anderson AJ, Dawes EA, Microbiol Rev 1990 54 450 472 2087222 (Pubitemid 120004382)
2. Microbial production of polyhydroxybutyrate, a biodegradable plastic using agro-industrial waste products. Hamieh A, Olama Z, Holail H, Glo Adv Res J Microbiol 2013 2 54 64
3. Cellular glycogen, beta-1,2-glucan, poly beta-hydroxybutyic acid and extracellular polysaccharides in fast-growing species of Rhizobium. Zevenhuizen LP, Antonie Van Leeuwenhoek 1981 47 481 497 10.1007/BF00443236 7337433 (Pubitemid 12137521)
4. Bacteroids from soybean root nodules: respiration and N§ssub§2§esub§ fixation in flow-chamber reactions with oxyleghaemoglobin. Bergersen FJ, Turner GL, Proc R Soc Lond B 1990 238 295 320 10.1098/rspb.1990.0001 (Pubitemid 20042866)
5. Exopolysaccharide and poly-(beta)-hydroxybutyrate coproduction in two Rhizobium meliloti strains. Tavernier P, Portais J, Nava S, Courtois J, Courtois B, Barbotin JN, Appl Environ Microbiol 1997 63 21 26 16535485 (Pubitemid 27020363)
6. A role for poly-βhydroxybutyrate in bacteroids of soybean nodules. Bergersen FJ, Peoples MB, Turner GL, Proc R Soc Lond B 1991 245 59 64 10.1098/rspb.1991.0088
7. Role of polyhydroxybutyrate and glycogen as carbon storage compounds in pea and bean bacteroids. Lodwig EM, Leonard M, Marroqui S, Wheeler TR, Findlay K, Downie JA, Poole PS, Mol Plant Microbe Interact 2005 18 67 74 10.1094/MPMI-18-0067 15672820 (Pubitemid 40033931)
8. Nitrogen fixation and poly-β-hydroxybutyric acid content in bacteroids of Rhizobium lupini and Rhizobium leguminosarum. Kretovich VL, Romanov VI, Yushkova LA, Shramko VI, Fedulova NG, Plant Soil 1977 48 291 302 10.1007/BF02187241
9. Metabolism of poly-β-hydroxybutyric acid in bacteroids of Rhizobium lupini in connection with nitrogen fixation and photosynthesis. Romanov VI, Fedulova NG, Tchermenskaya IE, Shramko VI, Molchanov MI, Kretovich WL, Plant Soil 1980 56 379 390 10.1007/BF02143032
10. Genetic and physiological characterization of a Rhizobium etli mutant strain unable to synthesize poly-beta-hydroxybutyrate. Cevallos MA, Encarnacion S, Leija A, Mora Y, Mora J, J Bacteriol 1996 178 1646 1654 8626293 (Pubitemid 26085613)
11. Engineering the nifH promoter region and abolishing poly-β- hydroxybutyrate accumulation in Rhizobium etli enhance nitrogen fixation in symbiosis with Phaseolus vulgaris. Peralta H, Mora Y, Salazar E, Encarnacion S, Palacios R, Mora J, Appl Environ Microbiol 2004 70 3272 3281 10.1128/AEM.70.6.3272-3281.2004 15184121 (Pubitemid 38745868)
12. Nodule invasion and symbiosome differentiation during Rhizobium etli-Phaseolus vulgaris symbiosis. Cermola M, Federova E, Tate R, Riccio A, Favre R, Patriarca EJ, Mol Plant Microbe Interact 2000 13 733 741 10.1094/MPMI.2000.13.7.733 10875334 (Pubitemid 30388081)
13. Competitiveness of a nif- Bradyrhizobium japonicum mutant against the wild-type strain. Hahn M, Studer D, FEMS Microbiol Lett 1986 33 143 148 (Pubitemid 16180431)
14. Physiology and molecular genetics of poly (β-hydroxy-alkanoic acid) synthesis in Alcaligenes eutrophus. Steinbüchel A, Schlegel HG, Mol Microbiol 1991 5 535 542 10.1111/j.1365-2958.1991.tb00725.x 2046547 (Pubitemid 21896075)
15. Considerations on the structure and biochemistry of bacterial polyhydroxyalkanoic acid inclusions. Steinbüchel A, Aerts K, Babel W, Follner C, Liebergesell M, Madkour MH, Mayer F, Pieper-Furst U, Pries A, Valentin HE, Can J Microbiol 1995 41 94 105 10.1139/m95-175 7606669
16. Poly(3-hydroxybutyrate) granule-associated proteins: impacts on poly(3-hydroxybutyrate) synthesis and degradation. Pötter M, Steinbüchel A, Biomacromolecules 2005 6 552 560 10.1021/bm049401n 15762612 (Pubitemid 40467792)
17. Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16. Pötter M, Madkour MH, Mayer F, Steinbüchel A, Microbiology 2002 148 2413 2426 12177335
18. The Ralstonia eutropha PhaR protein couples synthesis of the PhaP phasin to the presence of polyhydroxybutyrate in cells and promotes polyhydroxybutyrate production. York G, Stubbe MJ, Sinskey AJ, J Bacteriol 2002 184 59 66 10.1128/JB.184.1.59-66.2002 11741844 (Pubitemid 34003284)
19. Poly-beta-hydroxybutyrate (PHB) biosynthetic genes in Rhizobium meliloti 41. Tombolini R, Povolo S, Buson A, Squartini A, Nuti MP, Microbiology 1995 141 2553 2559 10.1099/13500872-141-10-2553 7582015
20. Identification and characterization of the intracellular poly-3-hydroxybutyrate depolymerase enzyme PhaZ of Sinorhizobium meliloti. Trainer MA, Capstick D, Zachertowska A, Lam KN, Clark SR, Charles TC, BMC Microbiol 2010 10 92 10.1186/1471-2180-10-92 20346169
21. Influence of the poly-3-hydroxybutyrate (PHB) granule-associated proteins (PhaP1 and PhaP2) on PHB accumulation and symbiotic nitrogen fixation in Sinorhizobium meliloti Rm1021. Wang C, Sheng X, Equi RC, Trainer MA, Charles TC, Sobral BWS, J Bacteriol 2007 189 9050 9056 10.1128/JB.01190-07 17921298
22. An electron donor system for nitrogenase-dependent acetylene reduction by extracts of soybean nodules. Klucas RV, Evans HJ, Plant Physiol 1968 43 1458 1460 10.1104/pp.43.9.1458 16656938
23. Heterologous complementation of the exopolysaccharide synthesis and carbon utilization phenotypes of Sinorhizobium meliloti Rm1021 polyhydroxyalkanoate synthesis mutants. Aneja P, Dai M, Lacorre DA, Pillon B, Charles TC, FEMS Microbiol Lett 2004 239 277 283 10.1016/j.femsle.2004.08.045 15476977 (Pubitemid 39346136)
24. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. Kaneko T, Nakamura Y, Sato S, Minamisawa K, Uchiumi T, Sasamoto S, Watanabe A, Idesawa K, Iriguchi M, Kawashima K, Kohara M, Matsumoto M, Shimpo S, Tsuruoka H, Wada T, Yamada M, Tabata S, DNA Res 2002 9 189 197 10.1093/dnares/9.6.189 12597275 (Pubitemid 36307023)
25. The composite genome of the legume symbiont Sinorhizobium meliloti. Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, et al. Science 2001 293 668 672 10.1126/science.1060966 11474104 (Pubitemid 32728664)
26. Improved tools for biological sequence comparison. Pearson WR, Lipman DJ, Proc Natl Acad Sci U S A 1988 85 2444 2448 10.1073/pnas.85.8.2444 3162770
27. The Pfam protein families database. Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer ELL, Eddy SR, Bateman A, Finn RD, Nucleic Acids Res 2012 Database Issue 40 290 D301
28. Binding of the major phasin, PhaP1, from Ralstonia eutropha H16 to poly(3-hydroxybutyrate) granules. Neumann L, Spinozzi F, Sinibaldi R, Rustichelli F, Pötter M, Steinbüchel A, J Bacteriol 2008 190 2911 2919 10.1128/JB.01486-07 18223073 (Pubitemid 351508190)
29. NIH Image to ImageJ: 25 years of image analysis. Schneider CA, Rasband WS, Eliceiri KW, Nat Methods 2012 9 671 675 10.1038/nmeth.2089 22930834
30. RNA polymerase from Rhizobium japonicum. Regensburger B, Hennecke H, Arch Microbiol 1983 135 103 109 10.1007/BF00408017 6639271
31. Vincent JM, A Manual for the Practical Study of Root-Nodule Bacteria Oxford, England: Blackwell Science Publications International Biological Programme Handbook No. 15. 1970