White rot Basidiomycetes isolated from Chiloé National Park in Los Lagos region, Chile

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 104, Issue 6, 2013, Pages 1193-1203

  Ortiz, Rodrigo ^a,b   Navarrete, José ^a   Oviedo, Claudia ^a   Párraga, Mario ^b   Carrasco, Ivo ^c   De La Vega, Eduardo ^b   Ortiz, Manuel ^b   Blanchette, Robert A ^d  

^a UNIVERSIDAD DEL BÍO BÍO   (Chile)

^b UNIVERSIDAD DE VALPARAÍSO   (Chile)

^c PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^d UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Biodegradation; Biodiversity; Chilo ; DNA; White rot fungi; Wood

Indexed keywords

INTERNAL TRANSCRIBED SPACER; LIGNIN; RIBOSOME DNA;

ARTICLE; BASIDIOMYCETES; BIODEGRADATION; BJERKANDERA; CERIPORIOPSIS SUBVERMISPORA; CHILE; CONTROLLED STUDY; CORIOLACEAE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; HYPHODONTIA; HYPHODONTIA RADULA; MYCOACIA; NATIONAL PARK; NONHUMAN; NUCLEOTIDE SEQUENCE; PENIOPHORA CINEREA; PHANEROCHAETE; PHANEROCHAETE AFFINIS; PHANEROCHAETE SORDIDA; PHLEBIA; PHLEBIA RADIATA; PHLEBIA SETULOSA; PRIORITY JOURNAL; SCANNING ELECTRON MICROSCOPY; STEREUM; STEREUM GAUSAPATUM; TRAMETES; WHITE ROT FUNGUS;

BASIDIOMYCOTA; CHILE; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; GENES, RRNA; MICROSCOPY, ELECTRON; MOLECULAR SEQUENCE DATA; RNA, FUNGAL; RNA, RIBOSOMAL; SEQUENCE ANALYSIS, DNA; WOOD;

EID: 84889609130     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-013-0041-z     Document Type: Article

References (85)

1. Acevedo F, Pizzul L, Castillo M, Cuevas R, Diez M (2011) Degradation of policyclic aromatic hydrocarbons by the Chilean white-rot fungus A. discolor. J Hard Mater 185:212-219. doi: 10.1016/j.jhazmat.2010.09.020
2. Agosin E, Blanchette RA, Silva H, Lapierre C, Cease K, Ibach R, Abad A, Muga P (1990) Characterization of palo podrido, a natural process of delignification in wood. Appl Environ Microbiol 56:65-74
3. Akhtar M, Blanchette RA, Kent T (1997) Fungal Delignification and Biomechanical Pulping of Wood. Adv Biochem Eng/Biotechnol 57:159-195
4. Arias H, Parada M, Vidal G (1999) Enzimas lignoliticas producidas por hongos del bosque nativo del Sur de Chile: no solo de Madera vive el hombre. Chile Forestal 6-7
5. Barrasa J, González A, Martínez A (1992) Ultrastructural Aspects of Fungal Delignification of Chilean Woods by G. australe and P. chrysocrea A Study of Natural and In Vitro Degradation. Holzforschung 46:1-8. doi: 10.1515/hfsg.1992.46.1.1
6. Bavendamm W (1928) Uber dad vorkommen und den nachweisvon oxydasen bei holzstorenden pilzen. Z Ptlkrankh Schulz 38:257-276
7. Begerow D, Nilsson H, Unterseher M, Maier W (2010) Current state and perspectives of fungal DNA barcoding and rapid identification procedures. Appl Microbiol Biotechnol 87:99-108. doi: 10.1007/s00253-010-2585-4
8. Blanchette R (1991) Delignification by wood-decay fungi. Annu Rev Phytopathol 29:381-398. doi: 10.1146/annurev.py.29.090191.002121
9. Blanchette RA (2003) Deterioration in historic and archaeological Woods from terrestrial sites. In: Koestler RJ, Koestler VR, Charola AE, Nieto-Fernandez FE (eds) Art, biology, and conservation biodeterioration of works of art. The Metropolitan Museum of Art, New York, pp 328-347
10. Blanchette RA, Simpson E (1992) Soft rot decay and wood pseudomorphs in an ancient coffin (700 BC) from tumulus MM at Gordion, Turkey. Int Assoc Wood Anat Bull 13:201-213
11. Blanchette RA, Jurgens J, Held B, Arenz B, Smith J (2005) Decay of historic and archeological wooden structures: degradation processes and molecular characterization of wood destroying fungi. http://www.iaws-web.org/ files/file/2005-Chile-Fullpaper-Blanchette-Jurgens-Held-Arenz-Smith.pdf Accessed 12 September 2012
12. Butin H, Peredo H (1986) Hongos parásitos en coníferas de América del Sur con especial referencia a Chile. Stuttgart, Berlin
13. Cubero O, Crespo A, Fatehi J, Bridge P (1999) DNA extraction and PCR amplification method suitable for fresh, herbarium stored, lichenized, and other fungi. Plant Syst Evol 216:243-249. doi: 10.1007/BF01084401
14. Dashtban M, Schraft H, Syed T, Qin W (2010) Fungal biodegradation and enzymatic modification of lignin. Int J Biochem Mol Biol 1:36-50
15. Díaz-Vaz J (1979) Claves para la identificación de maderas de árboles nativos y cultivados en Chile. Bosque 3:15-25
16. Dill I, Kraepelin G (1986) Palo Podrido: model for extensive delignification of wood by G. applanatum. Appl Environ Microbiol 52:1305-1312
17. Donoso C, Becerra J, Martinez M, Garrido N, Silva M (2008) Degradative ability 2,4,6-tribromofenol by saprophytic fungi T. versicolor and Agaricus augustus isolated from Chilean forestry. World J Microbiol Biotechnol 24:961-968. doi: 10.1007/s11274-007-9559-4
18. Elissetche J, Ferraz A, Parra C, Freer J, Baeza J, Rodriguez J (2001) Biodegradation of Chilean native wood species D. winteri and N. dombeyi, by G. australe. World J Microbiol Biotechnol 17:577-581
19. Elissetche J, Ferraz A, Freer J, Rodriguez J (2007) Enzymes produced by G. australe growing on wood and in submerged cultures. World J Microbiol Biotechnol 23(3):429-434. doi: 10.1007/s11274-006-9243-0
20. Eriksson K (1981) Fungal degradation of wood components. Pure Appl Chem 53:33-43
21. Eriksson KE, Blanchette RA, Ander P (1990) Microbial and enzymatic degradation of wood and wood components. Springer-Verlag, Berlin/New York
22. Eyzaguirre J (1988) Identificación purificación y caracterización de celulasas en microorganismos del "PALO PODRIDO". http://ri.conicyt.cl/575/article-23338.html. Accessed 29 December 2011
23. Ferraz A, Parra C, Freer J, Baeza J, Rodriguez J (2000) Characterization of white zones produced on Pinus radiata wood chips by G. australe and C. subvermispora. World J Microbiol Biotechnol 16:641-645. doi: 10.1023/A:1008981521479
24. Ferraz A, Parra C, Freer J, Baeza J, Rodriguez J (2001) Occurrence of iron-reducing compounds in biodelignified "palo podrido" wood samples. Int Biodeter Biodegr 47:203-208. doi: 10.1016/S0964-8305(01)00057-9
25. Furci G (2007) Fungi Austral. Guía de campo de los hongos más vistosos de Chile, Chile
26. Furci G (2008) Diversidad de especies Hongos. In: Ocho libros (ed) Biodiversidad de Chile: Patrimonio y Desafíos, Chile, pp 366-375
27. Gamundi I (2003) Discomycetes (Fungi, ascomycota) de Chile Austral I. Darwiniana 41:29-36
28. Gamundi J, Horak E (1993) Hongos de los bosques andino- patagónicos. Buenos Aires, Argentina
29. Garnica S, Valenzuela E (1998) Estudio Macro-Microscopico y Enzimatico Cualitativo de Cepas Miceliales de Basidicarpos de Agaricales II. Boletín Micológico 13:63-69
30. Garnica S, Ramírez C, Valenzuela E (1997) Estudio Macro-Microscopico y Enzimatico Cualitativo de Cepas Miceliales de Basidicarpos de Agaricales I. Boletín Micológico 12:63-73
31. Gelsomino G, Faedda R, Rizza C, Petrone G, Cacciola G (2011) New platforms for the diagnosis and identification of fungal and bacterial pathogens. In: Méndez-Vilas A (ed) Microbiology book series. Science against microbial pathogens: communicating current research and technological advances. pp. 622-630, España
32. Ginns J, Lefebvre MNL (1993) Lignicolous corticioid fungi (Basidiomycota) of North America: Systematics, distribution, and ecology. APS Press, St. Paul
33. González A (1980) Las pudriciones de la madera denominadas huempe o palo podrido de los bosques del sur de Chile y su etiología. Universidad Austral, Tesis
34. González A, Grinbergs J, Griva E (1986) Biological transformation of wood into feed for cattle-"Palo Podrido". Zentralbl Mikrobiol 141:181-186
35. González A, Martinez A, Almendros G, Grinbergs J (1989) A study of yeasts during the delignification and fungal transformation of wood into cattle feed in Chilean rain forest. Antonie Van Leeuwenhoek 55:221-236. doi: 10.1007/BF00393851
36. Guillen Y (2008) Capacidad lignocelulolítica y tolerancia a metales pesados de hongos pudridores de madera, que se desarrollan en la VIII región, y su posible uso biotecnológico. Universidad de Concepción, Tesis
37. Guillen Y, Navias D, Machuca A (2008) Tolerance to wood preservatives by copper-tolerant wood-rot fungi native to south-central Chile. Biodegradation 20:135-142. doi: 10.1007/s10532-008-9207-1
38. Halis R, Tan H, Ashaari Z, Mohamed R (2012) Biomodification on kenaf chip. Bio Res 7:984-987
39. Highley T, Dashek W (1998) Biotechnology in the study of brown and white rot decay. In: Bruce A, Palferman J (eds) Forest products biotechnology. Taylor & Francis, London, pp 15-36
40. Kim G, Lim Y, Song Y, Kim J (2005) Decay fungi from playgound wood products in service using 28S rDNA sequence analysis. Holzforschung 59:459-466. doi: 10.1515/HF.2005.076
41. Kirk T, Cullen D (1998) Enzymology and molecular genetics of wood degradation by white-rot fungi. In: Young R, Akhtar M (eds) Environmentally Friendly Technologies for the Pulp and Paper Industry. Wiley, New York, pp 273-307
42. Knoche W, Cruz-Knoche E, Pacotet M (1929) Der "Palo podrido" auf Chilod. Ein Beitrag zur Kenntnis der naturlichen Umwandlung des Holzes durch Pilze in ein Futtermittel. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Zweite Abt 79:427-431
43. Kühlwein H (1963) Zur Kenntnis des "Palo podrido", eines mikrobiell abgebauten Holzes aus Südchile. Zentralbl f Parasitenk Infektionskrankh und Hygiene Abt II 116:294-299
44. Lamar RT, Main LM, Dietrich DM, Glaser JA (1999) Screening of fungi for soil remediation potential. In: Adriano DC, Bollag JM, Frankenberger WT, Sims RC (eds) Bioremediation of contaminated soils. American Society of Agronomy, Madison, pp 437-456
45. Lanfranco D, Ide S, Ruiz C, Vives I, Peredo H (2003) Caracterización fitosanitaria de astillas de Eucaliptus spp. y de especies nativas. Bosque 24:47-54. doi: 10.4067/S0717-92002003000100004
46. Lazo W (1995) Hongos. In: Simonetti J, Arroyo M, Spotorno A, Lozada E (eds) Diversidad biológica en Chile. Comisión Nacional de Ciencia y Tecnología, Santiago, pp 21-25
47. Lazo W (1996) Algunos Ascomycetes y Basidiomycetes interesantes de Chile. Boletín Micológico 11:99-102
48. Lazo W (2001) Hongos de Chile: atlas micológico. Facultad de Ciencias de la Universidad de Chile, Chile
49. Leisola M, Pastinen O, Axe D (2012) Lignin - designed randomness. BIOcomplexity 2012:1-11. doi: 10.5048/BIO-C.2012.3
50. Lim W, Kim J, Chedgy R, Breuil C (2005) Fungal diversity from western red cedar fences and their resistance to B-thujaplicin. Antonie Van Leeuwenhoek 87:109-117. doi: 10.1007/s10482-004-1729-x
51. Martínez A, Speranza M, Ruiz-Dueñas F, Ferreira P, Camarero S, Guillén F, Martínez M, Gutiérrez A, Del Río J (2005) Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. Int Microbiol 8:195-204
52. Meteorological Directorate of Chile (2011) Climas de Chile. http:/ www.meteochile.gob.cl/climas-decima-region.html. Accessed 15 July 2011
53. Minter W, Peredo H (2006) Hongos de Chile. http:/ www.cybertruffle.org. uk/chilfung. Accessed 19 July 2011
54. Moncalvo JM, Nilsson RH, Koster B, Dunham SM, Bernauer T, Matheny PB, Porter TM, Margaritescu S, Weiss M, Garnica S, Danell E, Langer G, Langer E, Larsson E, Larsson KH, Vilgalys R (2006) The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods. Mycologia 98:937-948. doi: 10.3852/mycologia.98.6.937
55. Montiel A (2005) Identificación de la enzima responsable de la degradación de pentaclorofenol (PCF) en Amylomyces rouxii y optimización del mecanismo de degradación mediante la expresión heteróloga de peroxidasas. Universidad Autónoma Metropolitana, Tesis
56. Moreth U, Schmidt O (2000) Identification of indoor rot fungi by taxón-specific priming polymerase chain reaction. Holzforschung 54:1-8. doi: 10.1515/HF.2000.001
57. Mueller G, Schmit J, Hubndorf S, O'dell T, Lodge D, Leacock P, Mata M, Umañia L, Wu Q, Czederpiltz D (2004) Recommended protocols for sampling macrofungi. In: Mueller G, Bills G, Foster M (eds) Biodiversity of fungi: inventory and monitoring methods. Elsevier Academic Press, California, pp 169-172
58. Mujica F, Vergara C, Oehrens E (1980) Flora fungosa chilena. Universidad de Chile, Santiago
59. National Center for Biotechnology Information, GenBank (2013) Standard Nucleotide BLAST. http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM= blastn&BLAST-PROGRAMS=megaBlast&PAGE-TYPE=BlastSearch&SHOW-DEFAULTS= on&LINK-LOC=blasthome. Accessed 12 September 2012
60. O'brien H, Lynn J, Jackson J, Moncalvo J, Vilgalys R (2005) Fungal community analysis by large-scale sequencing of environmental samples. Appl Environ Microbiol 71:5544-5550. doi: 10.1128/AEM.71.9.5544- 5550.2005
61. Oses R, Valenzuela S, Freer J, Sanfuentes E, Rodriguez J (2008) Fungal endophytes in xylem of healthy Chilean trees and their posible role in early wood decay. Fungal Divers 33:77-86
62. Palma M, Valenzuela E, Parra P, Gutierrez M, Torelli L (2005) Cerrena unicolor (Bull.) Murr (Basidiomycota) Aislado de micangio de Tremex fuscicornis Fabr. (Hymenoptero Siricidae) Asociado a Decaimiento y Pudrición del Alamo (Populus sp.) en Chile. Boletín Micológico 20:57-61
63. Parada M, Arias H, Vidal G (2000) Aislamiento y selección de basidiomicetes nativos con capacidad lignolítica. Boletín Micológico 15:23-29
64. Peredo H (1987) Fitoparasitos en Nothofagus chilenos. Bosque 8:105-107
65. Philippi F (1983) Die Pilze Chiles, solveit dieselben als Nahrungsmittel gebraucht werden. Hedwigia 32:115-118
66. Prewiit M, Diehl S, Mcelroy T, Diehl W (2008) Comparison of general fungal and basidiomycete-specific ITS primers for identification of wood decay fungi. Forest Prod J 58:66-71
67. Raberg U, Hogberg N, Johan C (2005) Detection and species discrimination using rDNA T-RFLP for identification of wood decay fungi. Holzforschung 59:696-702. doi: 10.1515/HF.2005.111
68. Ramírez C (1988) Emendation of yeasts from decayed wood in the evergreen rainy Valdivian Forest of southern Chile. Mycopathologia 103:95-101. doi: 10.1007/BF00441265
69. Ramírez C, Gonzalez A (1985) Rhodotorula nothofagi sp. nov., isolated from decayed wood in the evergreen rainy Valdivian forest of southern Chile. Mycopathologia 91:171-173. doi: 10.1007/BF00446296
70. Ryvarden L, Gilbertson RL (1994) European polypores: part 2. Fungiflora, Oslo
71. Schmidt O (2006) Wood and tree fungi: biology, damage, protection, and use. Springer, Verlag
72. Schmidt O, Moreth U (1999) Identification of the Dry Rot Fungus, Serpula lacrymans, and the wild Merulis S. himantioides by amplified ribosomal DNA restriction analysis (ARDRA). Holzforschung 53:123-128
73. Schmidt O, Moreth U (2003) Data bank of rDNA-ITS sequences from building-rot fungi for their identification. Wood Sci and Technol 37:161-163. doi: 10.1007/s00226-003-0162-z
74. Silva H, Landa A, Agosin E (1990) Aislamiento, Selección y Caracterización de Hongos Lignolíticos Chilenos. Arch Biol Med Exp 23:41-49
75. Suwannasai H, Martín M, Phosri C, Sihanonth P, Whalley A, Spouge J (2013) Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon Genera. PLoS ONE 8:e54529. doi: 10.1371/journal.pone.0054529
76. Taboada-Puig R, Lú-Chau T, Moreira M, Feijoo G, Martinez M, Lema J (2011) A new strain of Bjerkandera sp. production, purification and characterization of versatile peroxidase. World J Microbiol Biotechnol 27:115-122. doi: 10.1007/s11274-010-0435-2
77. Tortella G, Rubilar O, Gianfreda L, Valenzuela E, Diez M (2008) Enzymatic characterization of Chilean native wood-rotting fungi for potenial use in the bioremediation of polluted environments with chlorophenols. World J Microbiol Biotechnol 24:2805-2818. doi: 10.1007/s11274-008-9810-7
78. Urairuj C, Khanongnuch C, Lumyong S (2003) Ligninolytic enzymes from tropical endophytic Xylariaceae. Fungal Divers 13:209-219
79. Valenzuela E, Barrera S (2001) Determinación taxonómica y enzimática cualitativa de hongos en aserrín de P. radiata en diversas condiciones naturales. Boletín Micológico 16:71-78
80. Valenzuela E, Ramírez C, Moreno G, Polette M, Garniga S, Peredo H, Grinbergs J (1996) Agaricales más comunes recolectados en el Campus Isla Teja de la Universidad Austral de Chile. Bosque 17:51-63
81. Vasiliauskas R, Stenlid J (1998) Fungi inhabiting stems of Picea abies in a managed stand in Lithuania. Forest Ecol Manag 109:119-126. doi: 10.1016/S0378-1127(98)00226-6
82. Vasiliauskas R, Larsson E, Larsson K, Stenlid J (2005) Persistence and long-term impact of Rotstop biological control agent on mycodiversity of Picea abies stumps. Biol Control 32:295-304. doi: 10.1016/j.biocontrol.2004.10.008
83. Wang CJK, Zabel RA (1990) Identification manual for fungi from utility poles in the Eastern United States. Allen Press, Lawrence
84. Schoch C, Seifert K, Huhndorf S, Robert V, Spouge J, Levesque C, Chen W, and fungal barcoding consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. PNAS 109: 6241-6246. doi: 10.1073/pnas.1117018109
85. Zadrazil F, Grinbergs J, González A (1982) "Palo podrido" - Decomposed wood used as feed. Appl Microbiol Biotechnol 15:167-171. doi: 10.1007/BF00511242