-
1
-
-
0014937223
-
Central dogma of molecular biology
-
F. Crick Central dogma of molecular biology Nature 227 1970 561 563
-
(1970)
Nature
, vol.227
, pp. 561-563
-
-
Crick, F.1
-
4
-
-
0040733390
-
The RNA-folding problem
-
D.E. Draper The RNA-folding problem Acc. Chem. Res. 25 1992 201 207
-
(1992)
Acc. Chem. Res.
, vol.25
, pp. 201-207
-
-
Draper, D.E.1
-
5
-
-
1242274330
-
A guide to ions and RNA structure
-
D.E. Draper A guide to ions and RNA structure RNA 10 2004 335 343
-
(2004)
RNA
, vol.10
, pp. 335-343
-
-
Draper, D.E.1
-
6
-
-
58749105663
-
RNA folding: Thermodynamic and molecular descriptions of the roles of ions
-
D.E. Draper RNA folding: thermodynamic and molecular descriptions of the roles of ions Biophys. J. 95 2008 5489 5495
-
(2008)
Biophys. J.
, vol.95
, pp. 5489-5495
-
-
Draper, D.E.1
-
7
-
-
11644276439
-
Limiting laws and counterion condensation in polyelectrolyte solutions I. Colligative properties
-
G.S. Manning Limiting laws and counterion condensation in polyelectrolyte solutions I. Colligative properties J. Chem. Phys. 51 1969 924 933
-
(1969)
J. Chem. Phys.
, vol.51
, pp. 924-933
-
-
Manning, G.S.1
-
9
-
-
19644366142
-
Elastic properties of a single-stranded charged homopolymeric ribonucleotide
-
Y. Seol, G.M. Skinner, and K. Visscher Elastic properties of a single-stranded charged homopolymeric ribonucleotide Phys. Rev. Lett. 93 2004 118102
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 118102
-
-
Seol, Y.1
Skinner, G.M.2
Visscher, K.3
-
10
-
-
30344443115
-
Persistence length changes dramatically as RNA folds
-
G. Caliskan, and C. Hyeon D. Thirumalai Persistence length changes dramatically as RNA folds Phys. Rev. Lett. 95 2005 268303 268306
-
(2005)
Phys. Rev. Lett.
, vol.95
, pp. 268303-268306
-
-
Caliskan, G.1
Hyeon, C.2
Thirumalai, D.3
-
11
-
-
33845328453
-
Size, shape, and flexibility of RNA structures
-
C. Hyeon, R.I. Dima, and D. Thirumalai Size, shape, and flexibility of RNA structures J. Chem. Phys. 125 2006 194905
-
(2006)
J. Chem. Phys.
, vol.125
, pp. 194905
-
-
Hyeon, C.1
Dima, R.I.2
Thirumalai, D.3
-
12
-
-
84863012080
-
Ionic strength-dependent persistence lengths of single-stranded RNA and DNA
-
H. Chen, and S.P. Meisburger L. Pollack Ionic strength-dependent persistence lengths of single-stranded RNA and DNA Proc. Natl. Acad. Sci. USA 109 2012 799 804
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 799-804
-
-
Chen, H.1
Meisburger, S.P.2
Pollack, L.3
-
13
-
-
84982060514
-
Röntgenuntersuchung gelöster fadenmoleküle
-
O. Kratky, and G. Porod Röntgenuntersuchung gelöster fadenmoleküle Recl. Trav. Chim. Pays Bas 68 1949 1106 1122
-
(1949)
Recl. Trav. Chim. Pays Bas
, vol.68
, pp. 1106-1122
-
-
Kratky, O.1
Porod, G.2
-
15
-
-
0030569147
-
Scattering functions of semiflexible polymers with and without excluded volume effects
-
J.S. Pedersen, and P. Schurtenberger Scattering functions of semiflexible polymers with and without excluded volume effects Macromolecules 29 1996 7602 7612
-
(1996)
Macromolecules
, vol.29
, pp. 7602-7612
-
-
Pedersen, J.S.1
Schurtenberger, P.2
-
17
-
-
0020207302
-
On the theory of weakly charged polyelectrolytes
-
A.R. Khokhlov, and K.A. Khachaturian On the theory of weakly charged polyelectrolytes Polymer (Guildf.) 23 1982 1742 1750
-
(1982)
Polymer (Guildf.)
, vol.23
, pp. 1742-1750
-
-
Khokhlov, A.R.1
Khachaturian, K.A.2
-
18
-
-
0036591032
-
The electrostatic persistence length of polymers beyond the OSF limit
-
R. Everaers, A. Milchev, and V. Yamakov The electrostatic persistence length of polymers beyond the OSF limit Eur Phys J E Soft Matter 8 2002 3 14
-
(2002)
Eur Phys J e Soft Matter
, vol.8
, pp. 3-14
-
-
Everaers, R.1
Milchev, A.2
Yamakov, V.3
-
20
-
-
0037065929
-
Orientational correlation function and persistence lengths of flexible polyelectrolytes
-
M. Ullner, and C.E. Woodward Orientational correlation function and persistence lengths of flexible polyelectrolytes Macromolecules 35 2002 1437 1445
-
(2002)
Macromolecules
, vol.35
, pp. 1437-1445
-
-
Ullner, M.1
Woodward, C.E.2
-
21
-
-
79960515457
-
Polyelectrolytes in salt solutions: Molecular dynamics simulations
-
J.M. Carrillo, and A.V. Dobrynin Polyelectrolytes in salt solutions: molecular dynamics simulations Macromolecules 44 2011 5798 5816
-
(2011)
Macromolecules
, vol.44
, pp. 5798-5816
-
-
Carrillo, J.M.1
Dobrynin, A.V.2
-
22
-
-
0042388622
-
Comments on the scaling behavior of flexible polyelectrolytes within the Debye-Hückel approximation
-
M. Ullner Comments on the scaling behavior of flexible polyelectrolytes within the Debye-Hückel approximation J. Phys. Chem. B 107 2003 8097 8110
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 8097-8110
-
-
Ullner, M.1
-
23
-
-
84864207739
-
Simulations of stretching a strong, flexible polyelectrolyte
-
M.J. Stevens, D.B. McIntosh, and O.A. Saleh Simulations of stretching a strong, flexible polyelectrolyte Macromolecules 45 2012 5757 5765
-
(2012)
Macromolecules
, vol.45
, pp. 5757-5765
-
-
Stevens, M.J.1
McIntosh, D.B.2
Saleh, O.A.3
-
24
-
-
84863771914
-
On the origin of the unusual behavior in the stretching of single-stranded DNA
-
N.M. Toan, and D. Thirumalai On the origin of the unusual behavior in the stretching of single-stranded DNA J. Chem. Phys. 136 2012 235103
-
(2012)
J. Chem. Phys.
, vol.136
, pp. 235103
-
-
Toan, N.M.1
Thirumalai, D.2
-
25
-
-
33847799582
-
Excluded volume effects and stretched polymer chains
-
P. Pincus Excluded volume effects and stretched polymer chains Macromolecules 9 1976 386 388
-
(1976)
Macromolecules
, vol.9
, pp. 386-388
-
-
Pincus, P.1
-
26
-
-
44449087047
-
Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy
-
K.C. Neuman, and A. Nagy Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy Nat. Methods 5 2008 491 505
-
(2008)
Nat. Methods
, vol.5
, pp. 491-505
-
-
Neuman, K.C.1
Nagy, A.2
-
27
-
-
80051486849
-
The passage of homopolymeric RNA through small solid-state nanopores
-
M. van den Hout, and G.M. Skinner N.H. Dekker The passage of homopolymeric RNA through small solid-state nanopores Small 7 2011 2217 2224
-
(2011)
Small
, vol.7
, pp. 2217-2224
-
-
Van Den Hout, M.1
Skinner, G.M.2
Dekker, N.H.3
-
28
-
-
78649877227
-
-
Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
-
D.C. Rio RNA: a laboratory manual 2011 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
-
(2011)
RNA: A Laboratory Manual
-
-
Rio, D.C.1
-
29
-
-
84863364363
-
Coatings of polyethylene glycol for suppressing adhesion between solid microspheres and flat surfaces
-
S. Upadhyayula, and T. Quinata V.I. Vullev Coatings of polyethylene glycol for suppressing adhesion between solid microspheres and flat surfaces Langmuir 28 2012 5059 5069
-
(2012)
Langmuir
, vol.28
, pp. 5059-5069
-
-
Upadhyayula, S.1
Quinata, T.2
Vullev, V.I.3
-
30
-
-
54749117023
-
Multiplexed single-molecule measurements with magnetic tweezers
-
N. Ribeck, and O.A. Saleh Multiplexed single-molecule measurements with magnetic tweezers Rev. Sci. Instrum. 79 2008 094301
-
(2008)
Rev. Sci. Instrum.
, vol.79
, pp. 094301
-
-
Ribeck, N.1
Saleh, O.A.2
-
31
-
-
84857837586
-
Power spectrum and Allan variance methods for calibrating single-molecule video-tracking instruments
-
B.M. Lansdorp, and O.A. Saleh Power spectrum and Allan variance methods for calibrating single-molecule video-tracking instruments Rev. Sci. Instrum. 83 2012 025115
-
(2012)
Rev. Sci. Instrum.
, vol.83
, pp. 025115
-
-
Lansdorp, B.M.1
Saleh, O.A.2
-
32
-
-
37349067907
-
Elasticity of short DNA molecules: Theory and experiment for contour lengths of 0.6-7 microm
-
Y. Seol, and J. Li M.D. Betterton Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 microm Biophys. J. 93 2007 4360 4373
-
(2007)
Biophys. J.
, vol.93
, pp. 4360-4373
-
-
Seol, Y.1
Li, J.2
Betterton, M.D.3
-
33
-
-
61349185799
-
Nonlinear low-force elasticity of single-stranded DNA molecules
-
O.A. Saleh, and D.B. McIntosh N. Ribeck Nonlinear low-force elasticity of single-stranded DNA molecules Phys. Rev. Lett. 102 2009 068301
-
(2009)
Phys. Rev. Lett.
, vol.102
, pp. 068301
-
-
Saleh, O.A.1
McIntosh, D.B.2
Ribeck, N.3
-
34
-
-
84864243915
-
Quantifying screening ion excesses in single-molecule force-extension experiments
-
J. Landy, D.B. McIntosh, and O.A. Saleh Quantifying screening ion excesses in single-molecule force-extension experiments Phys. Rev. Lett. 109 2012 048301
-
(2012)
Phys. Rev. Lett.
, vol.109
, pp. 048301
-
-
Landy, J.1
McIntosh, D.B.2
Saleh, O.A.3
-
35
-
-
0035957720
-
Reversible unfolding of single RNA molecules by mechanical force
-
J. Liphardt, and B. Onoa C. Bustamante Reversible unfolding of single RNA molecules by mechanical force Science 292 2001 733 737
-
(2001)
Science
, vol.292
, pp. 733-737
-
-
Liphardt, J.1
Onoa, B.2
Bustamante, C.3
-
37
-
-
34147193842
-
Stretching of homopolymeric RNA reveals single-stranded helices and base-stacking
-
Y. Seol, and G.M. Skinner A. Halperin Stretching of homopolymeric RNA reveals single-stranded helices and base-stacking Phys. Rev. Lett. 98 2007 158103
-
(2007)
Phys. Rev. Lett.
, vol.98
, pp. 158103
-
-
Seol, Y.1
Skinner, G.M.2
Halperin, A.3
-
38
-
-
80051973174
-
PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action
-
H. Otaka, and H. Ishikawa H. Aiba PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action Proc. Natl. Acad. Sci. USA 108 2011 13059 13064
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 13059-13064
-
-
Otaka, H.1
Ishikawa, H.2
Aiba, H.3
-
39
-
-
79953852829
-
Salt species-dependent electrostatic effects on ssDNA elasticity
-
D.B. McIntosh, and O.A. Saleh Salt species-dependent electrostatic effects on ssDNA elasticity Macromolecules 44 2011 2328 2333
-
(2011)
Macromolecules
, vol.44
, pp. 2328-2333
-
-
McIntosh, D.B.1
Saleh, O.A.2
-
40
-
-
0034635965
-
Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives
-
V.A. Parsegian, R.P. Rand, and D.C. Rau Osmotic stress, crowding, preferential hydration, and binding: a comparison of perspectives Proc. Natl. Acad. Sci. USA 97 2000 3987 3992
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 3987-3992
-
-
Parsegian, V.A.1
Rand, R.P.2
Rau, D.C.3
-
41
-
-
41149143297
-
Maxwell relations for single-DNA experiments: Monitoring protein binding and double-helix torque with force-extension measurements
-
H. Zhang, and J.F. Marko Maxwell relations for single-DNA experiments: Monitoring protein binding and double-helix torque with force-extension measurements Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 77 2008 031916
-
(2008)
Phys. Rev. e Stat. Nonlin. Soft Matter Phys.
, vol.77
, pp. 031916
-
-
Zhang, H.1
Marko, J.F.2
-
42
-
-
84954482801
-
Persistence length of polyelectrolyte chains
-
J.-L. Barrat, and J.-F. Joanny Persistence length of polyelectrolyte chains Europhys. Lett. 24 1993 333 338
-
(1993)
Europhys. Lett.
, vol.24
, pp. 333-338
-
-
Barrat, J.-L.1
Joanny, J.-F.2
-
43
-
-
0035833854
-
Strongly stretched semiflexible extensible polyelectrolytes and DNA
-
R.R. Netz Strongly stretched semiflexible extensible polyelectrolytes and DNA Macromolecules 34 2001 7522 7529
-
(2001)
Macromolecules
, vol.34
, pp. 7522-7529
-
-
Netz, R.R.1
-
44
-
-
80053193628
-
Single-molecule elasticity measurements of the onset of excluded volume in poly(ethylene glycol)
-
A. Dittmore, and D.B. McIntosh O.A. Saleh Single-molecule elasticity measurements of the onset of excluded volume in poly(ethylene glycol) Phys. Rev. Lett. 107 2011 148301
-
(2011)
Phys. Rev. Lett.
, vol.107
, pp. 148301
-
-
Dittmore, A.1
McIntosh, D.B.2
Saleh, O.A.3
-
46
-
-
84881594389
-
Simulations of stretching a strong, flexible polyelectrolyte: Using long chains to access the Pincus scaling regime
-
M.J. Stevens, D.B. McIntosh, and O.A. Saleh Simulations of stretching a strong, flexible polyelectrolyte: using long chains to access the Pincus scaling regime Macromolecules 46 2013 6369 6373
-
(2013)
Macromolecules
, vol.46
, pp. 6369-6373
-
-
Stevens, M.J.1
McIntosh, D.B.2
Saleh, O.A.3
-
47
-
-
0000227193
-
Intramolecular water bridge between the 2'-hydroxyl and phosphate groups of RNA. Cyclic nucleotides as a model system
-
P.H. Bolton, and D.R. Kearns Intramolecular water bridge between the 2'-hydroxyl and phosphate groups of RNA. Cyclic nucleotides as a model system J. Am. Chem. Soc. 101 1979 479 484
-
(1979)
J. Am. Chem. Soc.
, vol.101
, pp. 479-484
-
-
Bolton, P.H.1
Kearns, D.R.2
-
48
-
-
0034759469
-
A semiflexible polymer model applied to loop formation in DNA hairpins
-
S.V. Kuznetsov, and Y. Shen A. Ansari A semiflexible polymer model applied to loop formation in DNA hairpins Biophys. J. 81 2001 2864 2875
-
(2001)
Biophys. J.
, vol.81
, pp. 2864-2875
-
-
Kuznetsov, S.V.1
Shen, Y.2
Ansari, A.3
-
49
-
-
84889599623
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
50
-
-
33947462664
-
Light scattering from non-Gaussian chains
-
H. Benoit, and P. Doty Light scattering from non-Gaussian chains J. Phys. Chem-US 57 1953 958 963
-
(1953)
J. Phys. Chem-US
, vol.57
, pp. 958-963
-
-
Benoit, H.1
Doty, P.2
-
51
-
-
84864917111
-
Non-specific binding of Na+ and Mg2+ to RNA determined by force spectroscopy methods
-
C.V. Bizarro, A. Alemany, and F. Ritort Non-specific binding of Na+ and Mg2+ to RNA determined by force spectroscopy methods Nucleic Acids Res. 40 2012 6922 6935
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 6922-6935
-
-
Bizarro, C.V.1
Alemany, A.2
Ritort, F.3
|