ACC deaminase and IAA producing growth promoting bacteria from the rhizosphere soil of tropical rice plants

Journal of Basic Microbiology

Volumn 53, Issue 12, 2013, Pages 972-984

  Bal, Himadri Bhusan ^a   Das, Subhasis ^a   Dangar, Tushar K ^a   Adhya, Tapan K ^a  

^a CENTRAL RICE RESEARCH INSTITUTE   (India)

Author keywords

ACC deaminase; Growth promoting rhizobacteria; Indole acetic acid; Polyphasic taxonomy; Tropical rice

Indexed keywords

AGROMYCES; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); METHYLOPHAGA; MICROBACTERIUM; PAENIBACILLUS; RHIZOBIALES;

1 AMINOCYCLOPROPANECARBOXYLATE DEAMINASE; 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE; INDOLEACETIC ACID; INDOLEACETIC ACID DERIVATIVE; LYASE;

ACC DEAMINASE; ARTICLE; BACTERIUM; GROWTH PROMOTING RHIZOBACTERIA; INDIA; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; PHYSIOLOGY; POLYPHASIC TAXONOMY; RHIZOSPHERE; RICE; TROPICAL RICE;

ACC DEAMINASE; GROWTH PROMOTING RHIZOBACTERIA; INDOLE ACETIC ACID; POLYPHASIC TAXONOMY; TROPICAL RICE;

BACTERIA; CARBON-CARBON LYASES; INDIA; INDOLEACETIC ACIDS; ORYZA SATIVA; RHIZOSPHERE; SOIL MICROBIOLOGY;

EID: 84889563008     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.201200445     Document Type: Article

References (49)

1. Arshad, M., Frankenberger, W.T., Jr., 1998. Plant growth regulating substances in the rhizosphere: microbial production and functions. Adv. Agron, 62, 146-151.
2. Zahir, Z.A., Muhammad, A., Frankenberger, W.T., Jr., 2003. Plant growth promoting rhizobacteria: applications and perspectives in agriculture. Adv. Agron, 81, 97-168.
3. Bashan, Y., de-Bashan, L.E., 2010. How the plant growth-promoting bacterium Azospirillum promotes plant growth - a critical assessment. Adv. Agron, 108, 77-136.
4. Wu, C.H., Bernard, S.M., Andersen, G.L., Chen, W., 2009. Developing microbe-plant interactions for applications in plant-growth promotion and disease control, production of useful compounds, remediation and carbon sequestration. Microb. Biotechnol., 2, 428-440.
5. Bhattacharyya, P.N., Jha, D.K., 2012. Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture. World J. Microbiol. Biotechnol., 28, 1327-1350.
6. Compant, S., Clement, C., Sessitsch, A., 2010. Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization. Soil Biol. Biochem., 42, 669-678.
7. Laslo, E., György, E., Mara, G., Tamás, E. et al., 2012. Screening of plant growth promoting rhizobacteria as potential microbial inoculants. Crop Prot., 40, 43-48.
8. Matthijs, S., Tehrani, K.A., Laus, G., Jackson, R.W. et al., 2007. Thioquinolobactin, a Pseudomonas siderophore with antifungal and anti-Pythium activity. Environ. Microbiol., 9, 425-434.
9. El-Tarabily, K.A., 2006. Rhizosphere-competent isolates of streptomycete and non-streptomycete actinomycetes capable of producing cell-wall degrading enzymes to control Pythium aphanidermatum damping-off disease of cucumber. Can. J. Bot., 84, 211-222.
10. Zahir, Z.A., Ghani, U., Naveed, M., Nadeem, S.M. et al., 2009. Comparative effectiveness of Pseudomonas and Serratia sp. containing ACC-deaminase for improving growth and yield of wheat (Triticum aestivum L.) under salt-stressed conditions. Arch. Microbiol., 191, 415-424.
11. El-Tarabily, K.A., Nassar, A.H., Sivasithamparam, K., 2008. Promotion of growth of bean (Phaseolus vulgaris L.) in a calcareous soil by a phosphate-solubilizing, rhizosphere-competent isolate of Micromonospora endolithica. Appl. Soil Ecol., 39, 161-171.
12. Mantelin, S. Touraine, B., 2004. Plant growth-promoting bacteria and nitrate availability: impact on root development and nitrate uptake. J. Exp. Bot., 55, 27-34.
13. Spaepen, S., Vanderleyden, J., 2011. Auxin and plant-microbe interaction. Cold Spring Harb Perspect Biol., 3: a001438 First published online November 17, 2010 doi: 10.1101/cshperspect.a001438
14. Spaepen, S., Vanderleyden, J., Remans, R., 2007. Indole-3-acetic acid in microbial and microorganism-plant signaling. FEMS Microbiol. Rev., 31, 425-448.
15. Glick, B.R., Penrose, D.M., Li, J., 1998. A model for the lowering of plant ethylene concentration by plant growth-promoting bacteria. J. Theor. Biol., 190, 63-68.
16. Dimkpa, C., Weinand, T., Asch, F., 2009. Plant-rhizobacteria interactions alleviate abiotic stress conditions. Plant Cell Environ., 32, 1682-1694.
17. Khalid, A., Arshad, M., Zahir, Z.A., 2004. Screening plant growth promoting rhizobacteria for improving growth and yield of wheat. J. Appl. Microbiol., 96, 473-480.
18. Govindarajan, M., Balandreau, J., Kwon, S.W., Weon, H.Y. et al., 2008. Effects of the inoculation of Burkholderia vietnamensis and related endophytic diazotrophic bacteria on grain yield of rice. Microb. Ecol., 55, 21-37.
19. Malhotra, M., Srivastava, S., 2009. Stress-responsive indole-3-acetic acid biosynthesis by Azospirillum brasilense SM and its ability to modulate plant growth. Eur. J. Soil Biol., 45, 73-80.
20. Mayak, S., Tirosh, T., Glick, B.R., 2004. Plant growth-promoting bacteria confer resistance in tomato plants to salt stress. Plant Physiol. Biochem., 42, 565-572.
21. Lifshitz, R., Kloepper, J.W., Kozlowski, M., Simonson, C. et al., 1987. Growth promotion of canola (rapeseed) seedlings by a strain of Pseudomonas putida under gnotobiotic conditions. Can. J. Microbiol., 33, 390-395.
22. Ramakrishna, C., Sethunathan, N., 1982. Stimulation of autotrophic ammonium oxidation in rice rhizosphere soil by the insecticide carbofuran. Appl. Environ. Microbiol., 44, 1-4.
23. Spark, D.L., Page, A.L., Summer, M.E., Tabatabai, M.A. (Eds.), 1996. Methods of soil analysis, Part 3, Chemical methods. American Society of Agronomy, USA, p. 1358.
24. Reichardt, W., Mascariña, G., Padre, B., Doll, J., 1997. Microbial communities of continuously cropped, irrigated rice fields. Appl. Environ. Microbiol., 63, 233-238.
25. Dworkin, M., Foster, J., 1958. Experiments with some microorganisms which utilize ethane and hydrogen. J. Bacteriol., 75, 592-601.
26. Penrose, D.M., Glick, B.R., 2003. Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiol. Plant., 118, 10-15.
27. Holt, J.G., Kreig, N.R., Sneath, P.H.A., Staley, J.T. et al. (Eds), 1994. Bergey's Manual of Determinative Bacteriology, 9th edn., Williams and Wilkins, Baltimore, USA.
28. Yildirim, E. Turan, M. Donmez, M.F., 2008. Mitigation of salt stress in radish (Raphanus sativus l.) by plant growth promoting rhizobacteria. Roum. Biotechnol. Lett., 13, 3933-3943.
29. Sasser, M., 2001, Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. MIDI Technical Note 101.
30. Saitou, N., Nei, M., 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. E, 4, 406-425.
31. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
32. Tamura, K., Nei, M., Kumar, S., 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. USA, 101, 11030-11035.
33. Tamura, K., Dudley, J., Nei, M., Kumar, S., 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. E, 24, 1596-1599.
34. Glickmann, E., Dessaux, Y., 1995. A critical examination of the specificity of the Salkowski reagent for indolic compounds produced by phytopathogenic bacteria. Appl. Environ. Microbiol., 61, 793-796.
35. Leveau, J.H.J., Lindow, S.E., 2005. Utilization of the plant hormone indole-3-acetic acid for growth by Pseudomonas putida strain 1290. Appl. Environ. Microbiol., 71, 2365-2371.
36. Cappuccino, J.C., Sherman, N., 1992, Negative staining, in: Cappuccino, J.C., Sherman, N. (Eds), Microbiology: A Laboratory Manual, 3rd edn., Benjamin/Cummings Pub Co., Redwood City, 125-179.
37. Lorck, H., 1948. Production of hydrocyanic acid by bacteria. Physiol. Plant, 1, 142-146.
38. Schwyn, B., Neilands, J.B., 1987. Universal chemical assay for the detection and determination of siderophores. Anal. Biochem., 160, 47-56.
39. Mehta, S., Nautiyal, C.S., 2001. An efficient method for qualitative screening of phosphate solubilizing bacteria. Curr. Microbiol., 43, 51-56.
40. Yoshida, S., Forno, D.A., Cock, J.H., Gomez, K.A., 1976. Laboratory Manual for Physiological Studies of Rice, 3rd edn., International Rice Research Institute, Manila, Philippines
41. Porra, R.J., 2002. The chequered history of the development and use of simultaneous equations for accurate determination of chlorophylls a and b. Photosynth. Res., 73, 149-156.
42. Gomez, K.A., Gomez, A.A., 1984. Statistical Procedures for Agricultural Research, 2nd edn., John Wiley and Sons Inc, Singapore.
43. Tilak, K.V.B.R., Ranganayaki, N., Pal, K.K., De, R. et al., 2005. Diversity of plant growth and soil health supporting bacteria. Curr. Sci., 89, 136-150.
44. Vessey, J.K., 2003. Plant growth promoting rhizobacteria as biofertilizers. Plant Soil, 255, 571-586.
45. Ghosh, S., Penterman, J.N., Little, R.D., Chavez, R. et al., 2003. Three newly isolated plant growth-promoting bacilli facilitate the seedling growth of canola, Brassica campestris. Plant Physiol. Biochem., 41, 277-281.
46. Tsavkelova, E.A., Cherdyntseva, T.A., Botina, S.G. et al., 2007. Bacteria associated with orchid roots and microbial production of auxin. Microbiol. Res., 162, 69-76.
47. Saleem, M., Arshad, M., Hussain, S., Bhatti, A.S., 2007. Perspective of plant growth promoting rhizobacteria (PGPR) containing ACC deaminase in stress agriculture. J. Ind. Microbiol. Biotechnol., 34, 635-648.
48. Burd, G.I., Dixon, D.G., Glick, B.R., 2000. Plant growth promoting bacteria that decrease heavy metal toxicity in plants. Can. J. Microbiol., 46: 237-245.
49. Chakraborty, U., Roy, S., Chakraborty, A.P., Dey, P. et al., 2011. Plant growth promotion and amelioration of salinity stress in crop plants by a salt-tolerant bacterium. Rec. Res. Sci. Tech., 3, 61-70.