Open File Formats for High Content Analysis

High Content Screening: Science, Techniques and Applications

Volumn , Issue , 2007, Pages 317-328

  Swedlow, Jason R ^a   Rueden, Curtis ^b   Burel, Jean Marie ^a   Linkert, Melissa ^b   Loranger, Brian ^a   Allan, Chris ^a   Eliceiri, Kevin W ^b  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Data acquisition system complexity; high content assay (HCA) and imaging; Successful file format support

Indexed keywords

EID: 84889350753     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470229866.ch14     Document Type: Chapter

References (8)

1. Neumann B, et al. High-throughput RNAi screening by time-lapse imaging of live human cells. Nature Methods 2006;3:385-390.
2. Orchard S, et al. Proteomic data exchange and storage: the need for common standards and public repositories. Methods in Molecular Biology 2006;367:261-270.
3. Brazma A, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genetics 2001;29:365-371.
4. Christiansen JH, et al. EMAGE: a spatial database of gene expression patterns during mouse embryo development. Nucleic Acids Research 2006;34:D637-D641.
5. Lein ES, et al. Genome-wide atlas of gene expression in the adult mouse brain. Nature 2007;445:168-176.
6. Goldberg IG, et al. The open microscopy environment (OME) data model and XML file: open tools for informatics and quantitative analysis in biological imaging. Genome Biology 2005;6:R47.
7. Swedlow JR, Lewis SE, Goldberg IG. Data models across labs, genomes, space, and time. Nature Cell Biology 2006;8:1190-1194.
8. Ashburner M, Mungall CJ, Lewis SE. Ontologies for biologists: a community model for the annotation of genomic data. Cold Spring Harbor Symposia on Quantitative Biology 2003; 68:227-235.