-
2
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie S, Hughes JD, Campbell MJ, et al. Systematic determination of genetic network architecture. America 1999;22:281-5.
-
(1999)
America
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
-
3
-
-
66349135301
-
Application of fuzzy c-means clustering in data analysis of metabolomics
-
Li X, Lu X, Tian J, et al. Application of fuzzy c-means clustering in data analysis of metabolomics. Anal Chem 2009;81(11):4468-75.
-
(2009)
Anal Chem
, vol.81
, Issue.11
, pp. 4468-4475
-
-
Li, X.1
Lu, X.2
Tian, J.3
-
4
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999;286(5439):531-7.
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
-
5
-
-
33750696663
-
Effects of HER2 overexpression on cell signaling networks governing proliferation and migration
-
Wolf-Yadlin A, Kumar N, Zhang Y, et al. Effects of HER2 overexpression on cell signaling networks governing proliferation and migration. Mol Syst Biol 2006;2:54.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 54
-
-
Wolf-Yadlin, A.1
Kumar, N.2
Zhang, Y.3
-
6
-
-
0141626917
-
The effect of replication on gene expression microarray experiments
-
Pavlidis P, Li Q, Noble WS. The effect of replication on gene expression microarray experiments. Bioinformatics 2003;19(13):1620-7.
-
(2003)
Bioinformatics
, vol.19
, Issue.13
, pp. 1620-1627
-
-
Pavlidis, P.1
Li, Q.2
Noble, W.S.3
-
7
-
-
0034730124
-
Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations
-
Lee ML, Kuo FC, Whitmore GA, Sklar J. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci USA 2000;97(18):9834-9.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.18
, pp. 9834-9839
-
-
Lee, M.L.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
8
-
-
0036207548
-
Inference from clustering with application to gene-expression microarrays
-
Dougherty ER, Barrera J, Brun M, et al. Inference from clustering with application to gene-expression microarrays. JComputBiol 2002;9(1):105-26.
-
(2002)
JComputBiol
, vol.9
, Issue.1
, pp. 105-126
-
-
Dougherty, E.R.1
Barrera, J.2
Brun, M.3
-
9
-
-
3042686005
-
Bayesian mixture model based clustering of replicated microarray data
-
Medvedovic M, Yeung K, Bumgarner R. Bayesian mixture model based clustering of replicated microarray data. Bioinformatics 2004;20(8):1222-32.
-
(2004)
Bioinformatics
, vol.20
, Issue.8
, pp. 1222-1232
-
-
Medvedovic, M.1
Yeung, K.2
Bumgarner, R.3
-
10
-
-
33747890494
-
A mixture model with random-effects components for clustering correlated gene-expression profiles
-
Ng SK, McLachlan GJ, Wang K, et al. A mixture model with random-effects components for clustering correlated gene-expression profiles. Bioinformatics 2006;22(14):1745-52.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
, pp. 1745-1752
-
-
Ng, S.K.1
McLachlan, G.J.2
Wang, K.3
-
11
-
-
80053928843
-
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
-
Cooke EJ, Savage RS, Kirk PDW, et al. Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinformatics 2011;12(1):399.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.1
, pp. 399
-
-
Cooke, E.J.1
Savage, R.S.2
Kirk, P.D.W.3
-
12
-
-
0037667290
-
Clustering gene-expression data with repeated measurements
-
R34
-
Yeung KY, Medvedovic M, Bumgarner RE. Clustering gene-expression data with repeated measurements. Genome Biol 2003;4(5):R34:1-17.
-
(2003)
Genome Biol
, vol.4
, Issue.5
, pp. 1-17
-
-
Yeung, K.Y.1
Medvedovic, M.2
Bumgarner, R.E.3
-
13
-
-
0035979259
-
Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments
-
Kerr MK, Churchill GA. Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments. ProcNatl Acad SciUSA 2001;98(16):8961-5.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.16
, pp. 8961-8965
-
-
Kerr, M.K.1
Churchill, G.A.2
-
14
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner M, Meltzer P, Chen Y, et al. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 2000;406:536-40.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
-
16
-
-
0041965980
-
Cluster ensembles-a knowledge reuse framework for combining multiple partitions
-
Strehl A, Gosh J. Cluster ensembles-a knowledge reuse framework for combining multiple partitions. J Machine LearnRes 2002;3:583-617.
-
(2002)
J Machine Learn Res
, vol.3
, pp. 583-617
-
-
Strehl, A.1
Gosh, J.2
-
18
-
-
30344442460
-
Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
-
Grotkjaer T, Winther O, Regenberg B, et al. Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm. Bioinformatics 2006;22(1):58-67.
-
(2006)
Bioinformatics
, vol.22
, Issue.1
, pp. 58-67
-
-
Grotkjaer, T.1
Winther, O.2
Regenberg, B.3
-
19
-
-
0038724494
-
Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data
-
Monti S, Tamayo P, Mesirov J, Golub T. Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data. Machine Learn 2003;52:91-118.
-
(2003)
Machine Learn
, vol.52
, pp. 91-118
-
-
Monti, S.1
Tamayo, P.2
Mesirov, J.3
Golub, T.4
-
21
-
-
33947159574
-
Evaluation of stability of k-means cluster ensembles with respect to random initialization
-
Kuncheva LI, Vetrov DP. Evaluation of stability of k-means cluster ensembles with respect to random initialization. IEEETrans PatternAnalMachine Intell 2006;28(11):1798-808.
-
(2006)
IEEE Trans Pattern Anal Machine Intell
, vol.28
, Issue.11
, pp. 1798-1808
-
-
Kuncheva, L.I.1
Vetrov, D.P.2
-
22
-
-
79960956222
-
MCAM: multiple clustering analysis methodology for deriving hypotheses and insights from high-throughput proteomic datasets
-
Naegle KM, Welsch RE, Yaffe MB, et al. MCAM: multiple clustering analysis methodology for deriving hypotheses and insights from high-throughput proteomic datasets. PLoS Comput Biol 2011;7(7):e1002119.
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.7
-
-
Naegle, K.M.1
Welsch, R.E.2
Yaffe, M.B.3
-
23
-
-
77952482885
-
Multi-level bootstrap analysis of stable clusters in resting-state fMRI
-
Bellec P, Rosa-Neto P, Lyttelton OC, et al. Multi-level bootstrap analysis of stable clusters in resting-state fMRI. NeuroImage 2010;51(3):1126-39.
-
(2010)
Neuro Image
, vol.51
, Issue.3
, pp. 1126-1139
-
-
Bellec, P.1
Rosa-Neto, P.2
Lyttelton, O.C.3
-
24
-
-
77958118466
-
Link CluE: A MATLAB package for link-based cluster ensembles
-
Iam-on N, Garrett S. LinkCluE: A MATLAB package for link-based cluster ensembles. J Stat Software 2010;36(9):1-36.
-
(2010)
J Stat Software
, vol.36
, Issue.9
, pp. 1-36
-
-
Iam-on, N.1
Garrett, S.2
-
25
-
-
61449214257
-
Fuzzy ensemble clustering based on random projections for DNA microarray data analysis
-
Avogadri R, Valentini G. Fuzzy ensemble clustering based on random projections for DNA microarray data analysis. Artif IntellMed 2009;45(2-3):173-83.
-
(2009)
Artif Intell Med
, vol.45
, Issue.2-3
, pp. 173-183
-
-
Avogadri, R.1
Valentini, G.2
-
26
-
-
80054920244
-
CLICOM: Cliques for combining multiple clusterings
-
Mimaroglu S, Yagci M. CLICOM: Cliques for combining multiple clusterings. Expert Syst Appl 2012;39:1889-901.
-
(2012)
Expert Syst Appl
, vol.39
, pp. 1889-1901
-
-
Mimaroglu, S.1
Yagci, M.2
-
27
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes
-
Baldi P, Long AD. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 2001;17(6):509-19.
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
29
-
-
79952579286
-
Biological assessment of robust noise models in microarray data analysis
-
Posekany A, Felsenstein K, Sykacek P. Biological assessment of robust noise models in microarray data analysis. Bioinformatics 2011;27(6):807-14.
-
(2011)
Bioinformatics
, vol.27
, Issue.6
, pp. 807-814
-
-
Posekany, A.1
Felsenstein, K.2
Sykacek, P.3
-
30
-
-
0042093637
-
Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays
-
Draghici S, Kulaeva O, Hoff B, et al. Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays. Bioinformatics 2003;19(11):1348-59.
-
(2003)
Bioinformatics
, vol.19
, Issue.11
, pp. 1348-1359
-
-
Draghici, S.1
Kulaeva, O.2
Hoff, B.3
-
31
-
-
33749332751
-
Temporal dynamics of tyrosine phosphorylation in insulin signaling
-
Schmelzle K, Kane S, Gridley S, etal. Temporal dynamics of tyrosine phosphorylation in insulin signaling. Diabetes 2006;55:2171-9.
-
(2006)
Diabetes
, vol.55
, pp. 2171-2179
-
-
Schmelzle, K.1
Kane, S.2
Gridley, S.3
-
32
-
-
78149309682
-
PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies
-
Naegle KM, Gymrek M, Joughin BA, et al. PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies. Mol Cell Proteomics 2010;9(11):2558-70.
-
(2010)
Mol Cell Proteomics
, vol.9
, Issue.11
, pp. 2558-2570
-
-
Naegle, K.M.1
Gymrek, M.2
Joughin, B.A.3
-
33
-
-
34047174559
-
A module of negative feedback regulators defines growth factor signaling
-
Amit I, Citri A, Shay T, etal. A module of negative feedback regulators defines growth factor signaling. Nat Genet 2007;39(4):503-12.
-
(2007)
Nat Genet
, vol.39
, Issue.4
, pp. 503-512
-
-
Amit, I.1
Citri, A.2
Shay, T.3
-
34
-
-
1542405872
-
Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin
-
Carson JP, Zhang N, Frampton GM, et al. Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin. Cancer Res 2004;64(6):2096-104.
-
(2004)
Cancer Res
, vol.64
, Issue.6
, pp. 2096-2104
-
-
Carson, J.P.1
Zhang, N.2
Frampton, G.M.3
-
35
-
-
34547838641
-
The abundance of rnps1, a protein component of the exon junction complex, can determine the variability in efficiency of the nonsense mediated decay pathway
-
Viegas MH, Gehring NH, Breit S, et al. The abundance of rnps1, a protein component of the exon junction complex, can determine the variability in efficiency of the nonsense mediated decay pathway. Nucleic Acids Res 2007;35(13):4542-51.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.13
, pp. 4542-4551
-
-
Viegas, M.H.1
Gehring, N.H.2
Breit, S.3
-
36
-
-
0344703599
-
Normality of oligonucleotide microarray data and implications for parametric statistical analyses
-
Giles PJ, Kipling D. Normality of oligonucleotide microarray data and implications for parametric statistical analyses. Bioinformatics 2003;19(17):2254-62.
-
(2003)
Bioinformatics
, vol.19
, Issue.17
, pp. 2254-2262
-
-
Giles, P.J.1
Kipling, D.2
-
37
-
-
0037195138
-
Quantitative noise analysis for gene expression microarray experiments
-
Tu Y, Stolovitzky G, Klein U. Quantitative noise analysis for gene expression microarray experiments. Proc Natl Acad Sci USA 2002;99(22):14031-6.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.22
, pp. 14031-14036
-
-
Tu, Y.1
Stolovitzky, G.2
Klein, U.3
-
38
-
-
70149109457
-
A note on oligonucleotide expression values not being normally distributed
-
Hardin J, Wilson J. A note on oligonucleotide expression values not being normally distributed. Biostatistics 2009;10(3):446-50.
-
(2009)
Biostatistics
, vol.10
, Issue.3
, pp. 446-450
-
-
Hardin, J.1
Wilson, J.2
|