Surface modification of graphene nanopores for protein translocation

Nanotechnology

Volumn 24, Issue 49, 2013, Pages

  Shan, Y P ^a   Tiwari, P B ^a   Krishnakumar, P ^b   Vlassiouk, I ^c   Li, W Z ^a   Wang, X W ^a   Darici, Y ^a   Lindsay, S M ^b   Wang, H D ^d   Smirnov, S ^e   He, J ^a  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b ARIZONA STATE UNIVERSITY   (United States)

^c OAK RIDGE NATIONAL LABORATORY   (United States)

^d CHANGCHUN INSTITUTE OF APPLIED CHEMISTRY   (China)

^e NEW MEXICO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL VAPOR DEPOSITIONS (CVD); CHEMICALLY-MODIFIED GRAPHENE; GOLD NANOPARTICLES; MERCAPTOHEXADECANOIC ACID; MULTILAYER GRAPHENE; OXYGEN PLASMA TREATMENTS; PROTEIN TRANSLOCATION; SALT CONCENTRATION;

CHEMICAL VAPOR DEPOSITION; DNA SEQUENCES; GRAPHENE; OXYGEN; PHOSPHOLIPIDS; PLASMA APPLICATIONS; PROTEINS; TRANSMISSION ELECTRON MICROSCOPY;

NANOPORES;

BOVINE SERUM ALBUMIN; DPPE PEG2000; DPPE-PEG2000; FERRITIN; GOLD; GRAPHITE; INORGANIC SALT; MACROGOL DERIVATIVE; METAL NANOPARTICLE; OXYGEN; PHOSPHATIDYLETHANOLAMINE; PHOSPHOLIPID;

ANIMAL; ARTICLE; CATTLE; CHEMISTRY; HORSE; NANOPORE; PH; PROTEIN TRANSPORT; SURFACE PROPERTY; TRANSMISSION ELECTRON MICROSCOPY;

ANIMALS; CATTLE; FERRITINS; GOLD; GRAPHITE; HORSES; HYDROGEN-ION CONCENTRATION; METAL NANOPARTICLES; MICROSCOPY, ELECTRON, TRANSMISSION; NANOPORES; OXYGEN; PHOSPHATIDYLETHANOLAMINES; PHOSPHOLIPIDS; POLYETHYLENE GLYCOLS; PROTEIN TRANSPORT; SALTS; SERUM ALBUMIN, BOVINE; SURFACE PROPERTIES;

EID: 84888397551     PISSN: 09574484     EISSN: 13616528     Source Type: Journal    
DOI: 10.1088/0957-4484/24/49/495102     Document Type: Article

References (41)

1. Branton D et al 2008 The potential and challenges of nanopore sequencing Nature Biotechnol. 26 1146-53
2. Venkatesan B M and Bashir R 2011 Nanopore sensors for nucleic acid analysis Nature Nanotechnol. 6 615-24
3. Firnkes M, Pedone D, Knezevic J, Döblinger M and Rant U 2010 Electrically facilitated translocations of proteins through silicon nitride nanopores: conjoint and competitive action of diffusion, electrophoresis, and electroosmosis Nano Lett. 10 2162-7
4. Gn L-Q and Shim J W 2010 Single molecule sensing by nanopores and nanopore devices Analyst 135 441-51
5. Movileanu L 2009 Interrogating single proteins through nanopores: challenges and opportunities Trends Biotechnol. 27 333-41
6. Howorka S and Siwy Z 2009 Nanopore analytics: sensing of single molecules Chem. Soc. Rev. 38 2360-84
7. Han A, Creus M, Schurmann G, Linder V, Ward T R, de Rooij N F and Staufer U 2008 Label-free detection of single protein molecules and protein-protein interactions using synthetic nanopores Anal. Chem.. 80 4651-8 (Pubitemid 351842344)
8. Daniel F, Bradley L, David S M and Jiali L 2007 Electrical characterization of protein molecules by a solid-state nanopore Appl. Phys. Lett. 91 053901 (Pubitemid 47210868)
9. Wanunu M, Dadosh T, Ray V, Jin J, McReynolds L and Drndic M 2010 Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors Nature Nanotechnol. 5 807-14
10. Siwy Z S and Davenport M 2010 Nanopores: graphene opens up to DNA Nature Nanotechnol. 5 697-8
11. Schneider G G F, Kowalczyk S W, Calado V E, Pandraud G G, Zandbergen H W, Vandersypen L M K and Dekker C 2010 DNA translocation through graphene nanopores Nano Lett. 10 3163-7
12. Merchant C A et al 2010 DNA translocation through graphene nanopores Nano Lett. 10 2915-21
13. Garaj S, Hubbard W, Reina A, Kong J, Branton D and Golovchenko J A 2010 Graphene as a subnanometre trans-electrode membrane Nature 467 190-3
14. Meyer J C, Geim A K, Katsnelson M I, Novoselov K S, Booth T J and Roth S 2007 The structure of suspended graphene sheets Nature 446 60-3 (Pubitemid 46348040)
15. Tsoukleri G, Parthenios J, Papagelis K, Jalil R, Ferrari A C, Geim A K, Novoselov K S and Galiotis C 2009 Subjecting a graphene monolayer to tension and compression Small 5 2397-402
16. Postma H W C 2010 Rapid sequencing of individual DNA molecules in graphene nanogaps Nano Lett. 10 420-5
17. Prasongkit J, Grigoriev A, Pathak B, Ahuja R and Scheicher R H 2011 Transverse conductance of DNA nucleotides in a graphene nanogap from first principles Nano Lett. 11 1941-5
18. Venkatesan B M, Estrada D, Banerjee S, Jin X, Dorgan V E, Bae M-H, Aluru N R, Pop E and Bashir R 2011 Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA - protein complexes ACS Nano 6 441-50
19. Avdoshenko S M, Nozaki D, Gomes da Rocha C, González J W, Lee M H, Gutierrez R and Cuniberti G 2013 Dynamic and electronic transport properties of DNA translocation through graphene nanopores Nano Lett. 13 1969-76
20. Sathe C, Zou X, Leburton J-P and Schulten K 2011 Computational investigation of DNA detection using graphene nanopores ACS Nano 5 8842-51
21. Wells D B, Belkin M, Comer J and Aksimentiev A 2012 Assessing graphene nanopores for sequencing DNA Nano Lett. 12 4117-23
22. Nelson T, Zhang B and Prezhdo O V 2010 Detection of nucleic acids with graphene nanopores: ab initio characterization of a novel sequencing device Nano Lett. 10 3237-42
23. Saha K K, Drndić M and Nikolić B K 2011 DNA base-specific modulation of microampere transverse edge currents through a metallic graphene nanoribbon with a nanopore Nano Lett. 12 50-5
24. Di Ventra M 2013 Fast DNA sequencing by electrical means inches closer Nanotechnology 24 342501
25. Guohui H, Mao M and Sandip G 2012 Ion transport through a graphene nanopore Nanotechnology 23 395501
26. Mao M, Sandip G and Guohui H 2013 Hydrodynamic flow in the vicinity of a nanopore induced by an applied voltage Nanotechnology 24 245202
27. Ohno Y, Maehashi K, Yamashiro Y and Matsumoto K 2009 Electrolyte-gated graphene field-effect transistors for detecting pH and protein adsorption Nano Lett. 9 3318-22
28. Liu Z, Winters M, Holodniy M and Dai H 2007 siRNA delivery into human T cells and primary cells with carbon-nanotube transporters Angew. Chem. Int. Edn 46 2023-7 (Pubitemid 46973660)
29. Vlassiouk I, Smirnov S, Ivanov I, Fulvio P F, Dai S, Meyer H, Chi M, Hensley D, Datskos P and Lavrik N V 2011 Electrical and thermal conductivity of low temperature CVD graphene: the effect of disorder Nanotechnology 22 275716
30. Vlassiouk I, Regmi M, Fulvio P, Dai S, Datskos P, Eres G and Smirnov S 2011 Role of hydrogen in chemical vapor deposition growth of large single-crystal graphene ACS Nano 5 6069-76
31. Li X, Zhu Y, Cai W, Borysiak M, Han B, Chen D, Piner R D, Colombo L and Ruoff R S 2009 Transfer of large-area graphene films for high-performance transparent conductive electrodes Nano Lett. 9 4359-63
32. Schneider G F, Calado V E, Zandbergen H, Vandersypen L M K and Dekker C 2010 Wedging transfer of nanostructures Nano Lett. 10 1912-6
33. Vlassiouk I, Smirnov S and Siwy Z 2008 Ionic selectivity of single nanochannels Nano Lett. 8 1978-85
34. Vlassiouk I, Smirnov S and Siwy Z 2008 Nanofluidic ionic diodes. Comparison of analytical and numerical solutions ACS Nano 2 1589-602
35. Smeets R M M, Keyser U F, Krapf D, Wu M-Y, Dekker N H and Dekker C 2005 Salt dependence of ion transport and DNA translocation through solid-state nanopores Nano Lett. 6 89-95
36. Liu H, He J, Tang J, Liu H, Pang P, Cao D, Krstic P, Joseph S, Lindsay S and Nuckolls C 2010 Translocation of single-stranded DNA through single-walled carbon nanotubes Science 327 64-7
37. Chen P, Gu J, Brandin E, Kim Y-R, Wang Q and Branton D 2004 Probing single DNA molecule transport using fabricated nanopores Nano Lett. 4 2293-8
38. Talaga D S and Li J 2009 Single-molecule protein unfolding in solid state nanopores J. Am. Chem. Soc. 131 9287-97
39. Plesa C, Kowalczyk S W, Zinsmeester R, Grosberg A Y, Rabin Y and Dekker C 2013 Fast translocation of proteins through solid state nanopores Nano Lett. 13 658-63
40. Garaj S, Liu S, Golovchenko J A and Branton D 2013 Molecule-hugging graphene nanopores Proc. Natl Acad. Sci. 110 12192-6
41. He Y, Scheicher R H, Grigoriev A, Ahuja R, Long S, Huo Z and Liu M 2011 Enhanced DNA sequencing performance through edge-hydrogenation of graphene electrodes Adv. Funct. Mater. 21 2674-9