-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, and Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11, R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
2
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, and Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
4
-
-
84863453861
-
Technical and biological variance structure in mRNA-Seq data: Life in the real world
-
Oberg AL, Bot BM, Grill DE, Poland GA, and Therneau TM. 2012. Technical and biological variance structure in mRNA-Seq data: Life in the real world. BMC Genom 13, 304.
-
(2012)
BMC Genom
, vol.13
, pp. 304
-
-
Oberg, A.L.1
Bot, B.M.2
Grill, D.E.3
Poland, G.A.4
Therneau, T.M.5
-
5
-
-
78650539308
-
From RNA-seq reads to differential expression results
-
Oshlack A, Robinson MD, and Young MD. 2010. From RNA-seq reads to differential expression results. Genome Biol 11, 220.
-
(2010)
Genome Biol
, vol.11
, pp. 220
-
-
Oshlack, A.1
Robinson, M.D.2
Young, M.D.3
-
6
-
-
65649126066
-
Transcript length bias in RNA-seq data confounds systems biology
-
Oshlack A, and Wakefield MJ. 2009. Transcript length bias in RNA-seq data confounds systems biology. Biol Direct 4, 14.
-
(2009)
Biol Direct
, vol.4
, pp. 14
-
-
Oshlack, A.1
Wakefield, M.J.2
-
7
-
-
75249087100
-
Edger: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, and Smyth GK. 2010. Edger: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
8
-
-
79957960103
-
RNA-sequence analysis of human B-cells
-
Toung JM, Morley M, Li M, and Cheung VG. 2011. RNA-sequence analysis of human B-cells. Genome Res 21, 991-998.
-
(2011)
Genome Res
, vol.21
, pp. 991-998
-
-
Toung, J.M.1
Morley, M.2
Li, M.3
Cheung, V.G.4
-
9
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, and Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
10
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, et al. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature Protocols 7, 562-578.
-
(2012)
Nature Protocols
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
-
11
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, et al. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnol 28, 511-515.
-
(2010)
Nature Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
-
12
-
-
84888366419
-
-
A. C. Cameron and P. K. Trivedi (eds.) , Cambridge University Press, Cambridge 1998
-
Verbeke G. 2001. Regression Analysis of Count Data. A. C. Cameron and P. K. Trivedi (eds.), Cambridge University Press, Cambridge, 1998.
-
(2001)
Regression Analysis of Count Data
-
-
Verbeke, G.1
-
13
-
-
80054101904
-
Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
-
Wang Y, Ghaffari N, Johnson CD, et al. 2011. Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens. BMC Bioinform 12, S5.
-
(2011)
BMC Bioinform
, vol.12
-
-
Wang, Y.1
Ghaffari, N.2
Johnson, C.D.3
|