Fine mapping of the Rrs1 resistance locus against scald in two large populations derived from Spanish barley landraces

Theoretical and Applied Genetics

Volumn 126, Issue 12, 2013, Pages 3091-3102

  Hofmann, Kerstin ^a   Silvar, Cristina ^b,c   Casas, Ana M ^c   Herz, Markus ^a   Büttner, Bianca ^a   Gracia, M Pilar ^c   Contreras Moreira, Bruno ^c,d   Wallwork, Hugh ^e,f   Igartua, Ernesto ^c   Schweizer, Günther ^a  

^a Institute for Crop Science and Plant Breeding   (Germany)

^b UNIVERSITY OF A CORUÑA   (Spain)

^c CSIC   (Spain)

^d FUNDACIÓN ARAID   (Spain)

^e SOUTH AUSTRALIAN RESEARCH AND DEVELOPMENT INSTITUTE   (Australia)

^f UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CENTROMERIC REGIONS; DISEASE RESISTANCE; FLANKING MARKERS; GENETIC DISTANCES; LARGE POPULATION; MOLECULAR BREEDING; RESISTANCE GENES; RESISTANCE LOCUS;

DNA SEQUENCES;

GENES;

MICROSATELLITE DNA; PLANT DNA;

ARTICLE; ASCOMYCETES; CHROMOSOME MAP; CLASSIFICATION; DISEASE RESISTANCE; GENETIC MARKER; GENETICS; HORDEUM; IMMUNOLOGY; INNATE IMMUNITY; MICROBIOLOGY; PATHOGENICITY; PLANT CHROMOSOME; PLANT DISEASE; PLANT GENE; POPULATION GENETICS;

ASCOMYCOTA; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DISEASE RESISTANCE; DNA, PLANT; GENES, PLANT; GENETIC MARKERS; GENETICS, POPULATION; HORDEUM; IMMUNITY, INNATE; MICROSATELLITE REPEATS; PLANT DISEASES;

EID: 84888233390     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-013-2196-4     Document Type: Article

References (68)

1. Aghnoum R, Marcel TC, Johrde A, Pecchioni N, Schweizer P, Niks RE (2010) Basal host resistance of barley to powdery mildew: connecting quantitative trait loci and candidate genes. MPMI 23: 91-102.
2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
3. Avrova A, Knogge W (2012) Rhynchosporium commune: a persistent threat to barley cultivation. Mol Plant Pathol 13: 986-997.
4. Ayres G, Owen H (1971) Resistance of barley varieties to establishment of subcuticular mycelia by Rhynchosporium secalis. Trans Br Mycol Soc 57: 233-240.
5. Baba T, Tanno K, Furusho M, Komatsuda T (2011) Allelic variation at the EF-G locus among northern Moroccan six-rowed barleys. Plant Genetic Resour: Charact Util 9: 240-242.
6. Behn A, Hartl L, Schweizer G, Wenzel G, Baumer M (2004) QTL mapping for resistance against non-parasitic leaf spots in a spring barley doubled haploid population. Theor Appl Genet 108: 1229-1235.
7. Bjørnstad Å, Patil V, Tekauz A, Marøy AG, Skinnes H, Jensen A, Magnus H, MacKey J (2002) Resistance to scald (Rhynchosporium secalis) in barley (Hordeum vulgare) studied by near-isogenic lines. I. Markers and differential isolates. Phytopathol 92: 710-720.
8. Casao MC, Igartua E, Karsai I, Lasa JM, Gracia MP, Casas AM (2011) Expression analysis of vernalization and day-length response genes in barley (Hordeum vulgare L.) indicates that VRNH2 is a repressor of PPDH2 (HvFT3) under long days. J Exp Bot 6: 1939-1949.
9. Cheong J, Williams K, Wallwork H (2006) The identification of QTLs for adult plant resistance to leaf scald in barley. Aust J Agric Res 57: 961-965.
10. Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson J, Wanamaker S, Bozdag S, Roose M, Moscou M, Chao S, Varshney R, Szucs P, Sato K, Hayes P, Matthews D, Kleinhofs A, Muehlbauer G, DeYoung J, Marshall D, Madishetty K, Fenton R, Condamine P, Graner A, Waugh R (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10: 582.
11. Collinge DB, Kragh KM, Mikkelsen JD, Nielsen KK, Rasmussen U, Vad K (1993) Plant chitinases. Plant J 3: 31-40.
12. Dyck PL, Schaller CW (1961) Inheritance of resistance in barley to several physiologic races of the scald fungus. Can J Genet Cytol 3: 153-164.
13. Garvin DF, Brown AHD, Raman H, Read BJ (2000) Genetic mapping of the barley Rrs14 scald resistance gene with RFLP, isozyme and seed storage protein markers. Plant Breed 119: 193-196.
14. Genger RK, Brown AHD, Knogge W, Nesbitt K, Burdon JJ (2003) Development of SCAR markers linked to a scald resistance gene derived from wild barley. Euphytica 134: 149-159.
15. Graner A, Tekauz A (1996) RFLP mapping of a dominant gene conferring resistance to scald (Rhynchosporium secalis). Theor Appl Genet 93: 421-425.
16. Grønnerød S, Marøy AG, MacKey I, Tekauz A, Penner GA, Bjørnstad A (2002) Genetic analysis of resistance to barley scald (Rhynchosporium secalis) in the Ethiopian line 'Abyssinian' (CI668). Euphytica 126: 235-250.
17. Habgood MR, Hayes JD (1971) The inheritance of resistance to Rhynchosporium secalis in barley. Heredity 27: 25-37.
18. Hanemann A, Schweizer GF, Cossu R, Wicker T, Röder MS (2009) Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley. Theor Appl Genet 119: 1507-1522.
19. Hillocks RJ (2012) Farming with fewer pesticides: EU pesticide review and resulting challenges for UK agriculture. Crop Prot 31: 85-93.
20. IBSC International Barley Genome Sequencing Consortium (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 491: 711-716.
21. Igartua E, Gracia MP, Lasa JM, Medina B, Molina-Cano JL, Montoya JL, Romagosa I (1998) The Spanish barley core collection. Genet Resour Crop Ev 45: 475-481.
22. Igartua E, Moralejo M, Casas AM, Torres L, Molina-Cano JL (2013) Whole-genome analysis with SNPs from BOPA1 shows clearly defined groupings of Western Mediterranean, Ethiopian, and Fertile Crescent barleys. Genet Resour Crop Ev 60: 251-264.
23. Jackson LF, Webster RK (1976) Race differentiation, distribution, and frequency of Rhynchosporium secalis in California. Phytopathol 66: 719-725.
24. Jansen R, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455.
25. Jensen J, Backes G, Skinnes H, Giese H (2002) Quantitative trait loci for scald resistance in barley localized by a non-interval mapping procedure. Plant Breed 121: 124-128.
26. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12: 172-175.
27. Langridge P, Karakousis A, Kretschmer J, Manning S, Chalmers K (1996) Molecular relationship between barley varieties. http://wheat. pw. usda. gov/ggpages/DEM/Polymorphism/Waite/Barley_dend. gif. Accessed 26 Feb 2013.
28. Lasa JM (2008) Spanish barley core collection. Monografias INIA: Serie Agricola, n25. ISBN 978-84-7498-526-9.
29. Li HB, Zhou MX (2011) Quantitative trait loci controlling barley powdery mildew and scald resistances in two different barley doubled haploid populations. Mol Breed 27: 479-490.
30. Li JZ, Sjakste TG, Röder MS, Ganal MW (2003) Development and genetic mapping of 127 new microsatellite markers in barley. Theor Appl Genet 107: 1021-1027.
31. Liu ZW, Biyashev RM, Saghai Maroof MA (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theor Appl Genet 93: 869-876.
32. Looseley ME, Newton AC, Atkins SD, Fitt BDL, Fraije B, Thomas WTB, Keith R, Lynott J, Harrap D (2012) Genetic basis of control of Rhynchosporium secalis infection and symptom expression in barley. Euphytica 184: 47-56.
33. Mayer KFX, Martis M, Hedley PE, Šimková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Dolezél J, Waugh R, Stein N (2011) Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23: 1249-1263.
34. Muñoz-Amatriaín M, Moscou MJ, Bhat PR, Svensson JT, Bartoš J, Suchánková P, Šimková H, Endo TR, Fenton RD, Lonardi S, Castillo AM, Chao S, Cistué L, Cuesta-Marcos A, Forrest KL, Hayden MJ, Hayes PM, Horsley RD, Makoto K, Moody D, Sato K, Vallés MP, Wulff BBH, Muehlbauer GJ, Doležel J, Close TJ (2011) An improved consensus linkage map of barley based on flow-sorted chromosomes and single nucleotide polymorphism markers. Plant Genome 4: 238-249.
35. CI11549for resistance to barley scald (Rhynchosporium secalis). Mol Breed 12: 169-183.
36. Paulitz TC, Steffenson BJ (2011) Biotic stress in barley: disease problems and solutions. In: Ullrich SE (ed) Barley: production, improvement and uses. Blackwell Publishing Ltd, London, pp 307-354.
37. Penner GA, Tekauz A, Reimer E, Scoles GJ, Rossnagel BG, Eckstein PE, Legge WG, Burnett PA, Ferguson T, Helm JF (1996) The genetic basis of scald resistance in western Canadian barley cultivars. Euphytica 92: 367-374.
38. Phillips D, Nibau C, Ramsay L, Waugh R, Jenkins G (2010) Development of a molecular cytogenetic recombination assay for barley. Cytogenet Genome Res 129: 154-161.
39. Pickering R, Ruge-Wehling B, Johnston PA, Schweizer G, Ackermann P, Wehling P (2006) The transfer of a gene conferring resistance to scald (Rhynchosporium secalis) from Hordeum bulbosum into H. vulgare chromosome 4HS. Plant Breed 125: 576-579.
40. Ponce-Molina LJ, Casas AM, Gracia MP, Silvar C, Mansour E, Thomas WBT, Schweizer G, Herz M, Igartua E (2012) Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Sci 52: 2469-2480.
41. Ramsay L, Macaulay M, degli Ivanissevich S, MacLean K, Cardle L, Fuller J, Edwards KJ, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156: 1997-2005.
42. Read BJ, Macdonald AF (1991) Hordeum vulgare (barley) cv. Yerong. Aust J Exp Agric 31: 866.
43. Rostoks N, Mudie S, Cardle L, Russell J, Ramsay L, Booth A, Svensson J, Wanamaker S, Walia H, Rodriguez E, Hedley P, Liu H, Morris J, Close T, Marshall D, Waugh R (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Mol Gen Genomics 274: 515-527.
44. Sayed H, Kayyal H, Ramsay L, Ceccarelli S, Baum M (2002) Segregation distortion in doubled haploid lines of barley (Hordeum vulgare L.) detected by simple sequence repeat (SSR). Euphytica 225: 265-272.
45. Schweizer GF, Baumer M, Daniel G, Rugel H, Röder MS (1995) RFLP markers linked to scald (Rhynchosporium secalis) resistance gene Rh2 in barley. Theor Appl Genet 90: 920-924.
46. CI8288in barley. In: Proceedings of 9th Int Barley Genet Symposium, Brno, Czech Republic, 20-26 June 2004, pp 258-265.
47. Shipton WA, Boyd WJR, Ali SM (1974) Scald of Barley. Rev Plant Pathol 53: 839-861.
48. Silvar C, Casas AM, Kopahnke D, Habekuß A, Schweizer G, Gracia MP, Lasa JM, Ciudad FJ, Molina-Cano JL, Igartua E, Ordon F (2010) Screening the Spanish barley core collection for disease resistance. Plant Breed 129: 45-52.
49. Silvar C, Casas AM, Igartua E, Ponce-Molina LJ, Gracia MP, Schweizer G, Herz M, Flath K, Waugh R, Kopahnke D, Ordon F (2011) Resistance to powdery mildew in Spanish barley landraces is controlled by different sets of quantitative trait loci. Theor Appl Genet 123: 1019-1028.
50. Starling TM, Roane CW, Chi KR (1971) Inheritance of reaction to Rhynchosporium secalis in winter barley cultivars. In: Proceedings of 2nd Int Barley Genetics Symposium, Pullman, WA, pp 513-519.
51. Stein N, Prasad M, Scholz U, Thiel T, Zhang H, Wolf M, Kota R, Varshney RK, Perovic D, Grosse I, Graner A (2007) A 1, 000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. Theor Appl Genet 114: 823-839.
52. Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development of cDNA derived microsatellite markers in barley (Hordeum vulgare L.). Theor Appl Genet 106: 411-422.
53. Thirugnanasambandam A, Wright KM, Atkins SD, Whisson SC, Newton AC (2011) Infection of Rrs1 barley by an incompatible race of the fungus Rhynchosporium secalis expressing the green fluorescent protein. Plant Pathol 60: 513-521.
54. Thomas WTB, Powell W, Waugh R, Chalmers KJ, Barua UM, Jack P, Lea V, Forster BP, Swanston JS, Ellis RP, Hanson PR, Lance RCM (1995) Detection of quantitative trait loci for agronomic, yield, grain and disease characters in spring barley (Hordeum vulgare L.). Theor Appl Genet 91: 1037-1047.
55. van Ooijen JW (2004) MapQTL® 5, Software for the mapping of quantitative trait loci in experimental populations. Kyazma BV, Wageningen.
56. van Ooijen JW (2006) JoinMap 4, software for the calculation of genetics linkage maps in experimental populations. Kyazma BV, Wageningen.
57. Varshney RK, Grosse I, Hähnel U, Siefken R, Prasad M, Stein N, Langridge P, Altschmied L, Graner A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. Theor Appl Genet 113: 239-250.
58. Varshney RK, Marcel TC, Ramsay L, Russell J, Röder MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theor Appl Genet 114: 1091-1103.
59. von Korff M, Wang H, Léon J, Pillen K (2005) AB-QTL analysis in spring barley. I. Detection of resistance genes against powdery mildew, leaf rust and scald introgressed from wild barley. Theor Appl Genet 111: 583-590.
60. VSN International (2011) Genstat for Windows 14th edn. VSN International, Hemel Hempstead, UK http://www. vsni. co. uk/software/genstat?ref=genstat. co. uk. Accessed 03 Oct 2011.
61. Wagner C, Schweizer G, Krämer M, Dehmer-Badani AG, Ordon F, Friedt W (2008) The complex quantitative barley-Rhynchosporium secalis interaction: newly identified QTL may represent already known resistance genes. Theor Appl Genet 118: 113-122.
62. Wallwork H, Grcic M (2011) The use of differential isolates of Rhynchosporium secalis to identify resistance to leaf scald in barley. Aust Plant Pathol 40: 490-496.
63. Williams KJ, Bogacki P, Scott L, Karakousis A, Wallwork H (2001) Mapping a gene for scald resistance in barley Line 'B87/14' and validation of microsatellite and RFLP markers for marker-assisted selection. Plant Breed 120: 301-304.
64. Xi K, Xue AG, Burnett PA, Helm JH, Turkington TK (2000) Quantitative resistance of barley cultivars to Rhynchosporium secalis. Can J Plant Pathol 22: 221-227.
65. Yun SJ, Gyenis L, Hayes PM, Matus I, Smith KB, Steffenson BJ, Muehlbauer GJ (2005) Quantitative trait loci for multiple disease resistance in wild barley. Crop Sci 45: 2563-2572.
66. Zaffarano PL, McDonald BA, Linde CC (2011) Two new species of Rhynchosporium. Mycologia 103: 195-202.
67. Zhan J, Fitt BDL, Pinnschmidt HO, Oxley SJP, Newton AC (2008) Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathol 57: 01-14.
68. Zhan J, Yang L, Zhu W, Shang L, Newton AC (2012) Pathogen populations evolve to greater race complexity in agricultural systems-evidence from analysis of Rhynchosporium secalis virulence data. PLoS One 6: e38611.