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Volumn 60, Issue 1, 2013, Pages 251-264

Whole-genome analysis with SNPs from BOPA1 shows clearly defined groupings of Western Mediterranean, Ethiopian, and Fertile Crescent barleys

Author keywords

Barley; Domestication; Phylogeny; Western Mediterranean; Whole genome scan

Indexed keywords

BARLEY; CHLOROPLAST; CHROMOSOME; DOMESTICATION; GENETIC MARKER; GENOME; GERMPLASM; HYPOTHESIS TESTING; MOLECULAR ANALYSIS; PHYLOGENY; PROTEIN; VARIANCE ANALYSIS; VERNALIZATION;

EID: 84871996950     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-012-9831-9     Document Type: Article
Times cited : (15)

References (59)
  • 1
    • 77957363959 scopus 로고    scopus 로고
    • Agricultural origins: centers and noncenters; a Near Eastern reappraisal
    • Abbo S, Lev-Yadun S, Gopher A (2010) Agricultural origins: centers and noncenters; a Near Eastern reappraisal. Crit Rev Plant Sci 29: 319-328.
    • (2010) Crit Rev Plant Sci , vol.29 , pp. 319-328
    • Abbo, S.1    Lev-Yadun, S.2    Gopher, A.3
  • 2
    • 52949124435 scopus 로고    scopus 로고
    • The genetic expectations of a protracted model for the origins of domesticated crops
    • Allaby RG, Fuller DQ, Brown TA (2008) The genetic expectations of a protracted model for the origins of domesticated crops. Proc Natl Acad Sci USA 105: 13892-13896.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 13892-13896
    • Allaby, R.G.1    Fuller, D.Q.2    Brown, T.A.3
  • 3
    • 35348931702 scopus 로고    scopus 로고
    • A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley
    • Azhaguvel P, Komatsuda T (2007) A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley. Ann Bot 100: 1009-1015.
    • (2007) Ann Bot , vol.100 , pp. 1009-1015
    • Azhaguvel, P.1    Komatsuda, T.2
  • 4
    • 79960146797 scopus 로고    scopus 로고
    • Allelic variation at the EF-G locus among northern Moroccan six-rowed barleys
    • Baba T, Tanno K, Furusho M, Komatsuda T (2011) Allelic variation at the EF-G locus among northern Moroccan six-rowed barleys. Plant Genet Resour Charact Util 9: 240-242.
    • (2011) Plant Genet Resour Charact Util , vol.9 , pp. 240-242
    • Baba, T.1    Tanno, K.2    Furusho, M.3    Komatsuda, T.4
  • 6
    • 78650146821 scopus 로고    scopus 로고
    • Multivariate patterns of diversity in Ethiopian barleys
    • Bjørnstad A, Abay F (2010) Multivariate patterns of diversity in Ethiopian barleys. Crop Sci 50: 1579-1586.
    • (2010) Crop Sci , vol.50 , pp. 1579-1586
    • Bjørnstad, A.1    Abay, F.2
  • 7
    • 0034994294 scopus 로고    scopus 로고
    • RAPD data do not support a second centre of barley domestication in Morocco
    • Blattner FR, Badani-Méndez A (2001) RAPD data do not support a second centre of barley domestication in Morocco. Genet Resour Crop Evol 48: 13-19.
    • (2001) Genet Resour Crop Evol , vol.48 , pp. 13-19
    • Blattner, F.R.1    Badani-Méndez, A.2
  • 9
    • 58349089712 scopus 로고    scopus 로고
    • The complex origins of domesticated crops in the Fertile Crescent
    • Brown TA, Jones MK, Powell W, Allaby RG (2008) The complex origins of domesticated crops in the Fertile Crescent. Trends Ecol Evol 24: 103-109.
    • (2008) Trends Ecol Evol , vol.24 , pp. 103-109
    • Brown, T.A.1    Jones, M.K.2    Powell, W.3    Allaby, R.G.4
  • 10
    • 79958693883 scopus 로고    scopus 로고
    • Introgression of an intermediate VRNH1 allele in barley (Hordeumvulgare L.) leads to reduced vernalization requirement without affecting freezing tolerance
    • Casao MC, Igartua E, Karsai I, Bhat PR, Cuadrado N, Gracia MP, Lasa JM, Casas AM (2011) Introgression of an intermediate VRNH1 allele in barley (Hordeumvulgare L.) leads to reduced vernalization requirement without affecting freezing tolerance. Mol Breeding 28: 475-484.
    • (2011) Mol Breeding , vol.28 , pp. 475-484
    • Casao, M.C.1    Igartua, E.2    Karsai, I.3    Bhat, P.R.4    Cuadrado, N.5    Gracia, M.P.6    Lasa, J.M.7    Casas, A.M.8
  • 11
    • 19944406823 scopus 로고    scopus 로고
    • Distribution of MWG699 polymorphism in Spanish European barleys
    • Casas AM, Yahiaoui S, Ciudad F, Igartua E (2005) Distribution of MWG699 polymorphism in Spanish European barleys. Genome 48: 41-45.
    • (2005) Genome , vol.48 , pp. 41-45
    • Casas, A.M.1    Yahiaoui, S.2    Ciudad, F.3    Igartua, E.4
  • 12
    • 56849096254 scopus 로고    scopus 로고
    • Transgressive segregation for phenological traits in barley explained by two major QTL alleles with additivity
    • Castro AJ, Hayes P, Viega L, Vales I (2008) Transgressive segregation for phenological traits in barley explained by two major QTL alleles with additivity. Plant Breeding 127: 561-568.
    • (2008) Plant Breeding , vol.127 , pp. 561-568
    • Castro, A.J.1    Hayes, P.2    Viega, L.3    Vales, I.4
  • 18
    • 78650068841 scopus 로고    scopus 로고
    • Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure
    • Cuesta-Marcos A, Szu{double acute}cs P, Close TJ, Filichkin T, Muehlbauer GJ, Smith KP, Hayes PM (2010) Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure. BMC Genomics 11: 707.
    • (2010) BMC Genomics , vol.11 , pp. 707
    • Cuesta-Marcos, A.1    Szucs, P.2    Close, T.J.3    Filichkin, T.4    Muehlbauer, G.J.5    Smith, K.P.6    Hayes, P.M.7
  • 20
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HEL (2010) Arlequin suite ver 3. 5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564-567.
    • (2010) Mol Ecol Resour , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 21
    • 70349506039 scopus 로고    scopus 로고
    • Detecting loci under selection in a hierarchically structured population
    • Excoffier L, Hofer T, Foll M (2009) Detecting loci under selection in a hierarchically structured population. Heredity 103: 285-298.
    • (2009) Heredity , vol.103 , pp. 285-298
    • Excoffier, L.1    Hofer, T.2    Foll, M.3
  • 22
    • 77956463857 scopus 로고    scopus 로고
    • Genetic perspectives on crop domestication
    • Gross BL, Olsen KM (2010) Genetic perspectives on crop domestication. Trends Plant Sci 15: 529-537.
    • (2010) Trends Plant Sci , vol.15 , pp. 529-537
    • Gross, B.L.1    Olsen, K.M.2
  • 23
    • 0004912771 scopus 로고
    • Character variability and evolutionary trends in a barley hybrid swarm - a case study
    • Hammer K, Lehmann CO, Perrino P (1985) Character variability and evolutionary trends in a barley hybrid swarm - a case study. Biol Zentralblatt 104: 511-517.
    • (1985) Biol Zentralblatt , vol.104 , pp. 511-517
    • Hammer, K.1    Lehmann, C.O.2    Perrino, P.3
  • 26
    • 5344258986 scopus 로고    scopus 로고
    • High-density AFLP map of nonbrittle rachis 1 (btr1) and 2 (btr2) genes in barley (Hordeumvulgare L.)
    • Komatsuda T, Maxim P, Senthil N, Mano Y (2004) High-density AFLP map of nonbrittle rachis 1 (btr1) and 2 (btr2) genes in barley (Hordeumvulgare L.). Theor Appl Genet 109: 986-995.
    • (2004) Theor Appl Genet , vol.109 , pp. 986-995
    • Komatsuda, T.1    Maxim, P.2    Senthil, N.3    Mano, Y.4
  • 28
    • 0034982785 scopus 로고    scopus 로고
    • Genetic diversity in Hordeumagriocrithon E. Åberg, six-rowed barley with brittle rachis, from Tibet
    • Konishi T (2001) Genetic diversity in Hordeumagriocrithon E. Åberg, six-rowed barley with brittle rachis, from Tibet. Genet Res Crop Evol 48: 27-34.
    • (2001) Genet Res Crop Evol , vol.48 , pp. 27-34
    • Konishi, T.1
  • 30
    • 0002110083 scopus 로고
    • Hordeumspontaneum C. Koch emend Bacht. collected in Southern Morocco
    • Molina-Cano JL, Conde J (1980) Hordeumspontaneum C. Koch emend Bacht. collected in Southern Morocco. Barley Genet Newsl 10: 44-47.
    • (1980) Barley Genet Newsl , vol.10 , pp. 44-47
    • Molina-Cano, J.L.1    Conde, J.2
  • 31
    • 0001615998 scopus 로고
    • Hordeumspontaneum C. Koch as a weed of barley fields in Morocco
    • Molina-Cano JL, Gómez Campo C, Conde J (1982) Hordeumspontaneum C. Koch as a weed of barley fields in Morocco. Z Pflanzenzücht 88: 161-167.
    • (1982) Z Pflanzenzücht , vol.88 , pp. 161-167
    • Molina-Cano, J.L.1    Gómez Campo, C.2    Conde, J.3
  • 36
    • 77955293622 scopus 로고    scopus 로고
    • Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data
    • Moragues M, Comadran R, Waugh R, Milne I, Flavell AJ, Russell JR (2010) Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data. Theor Appl Genet 120: 1525-1534.
    • (2010) Theor Appl Genet , vol.120 , pp. 1525-1534
    • Moragues, M.1    Comadran, R.2    Waugh, R.3    Milne, I.4    Flavell, A.J.5    Russell, J.R.6
  • 37
    • 33847636042 scopus 로고    scopus 로고
    • Genetic evidence for a second domestication of barley (Hordeumvulgare) east of the Fertile Crescent
    • Morrell PL, Clegg MT (2007) Genetic evidence for a second domestication of barley (Hordeumvulgare) east of the Fertile Crescent. Proc Natl Acad Sci USA 104: 3289-3294.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 3289-3294
    • Morrell, P.L.1    Clegg, M.T.2
  • 39
    • 34047124194 scopus 로고    scopus 로고
    • The horn of Africa as a center of barley diversification and a potential domestication site
    • Orabi J, Backes G, Wolday A, Yahyaoui A, Jahoor A (2007) The horn of Africa as a center of barley diversification and a potential domestication site. Theor Appl Genet 114: 1117-1127.
    • (2007) Theor Appl Genet , vol.114 , pp. 1117-1127
    • Orabi, J.1    Backes, G.2    Wolday, A.3    Yahyaoui, A.4    Jahoor, A.5
  • 40
    • 70649089457 scopus 로고    scopus 로고
    • Genetic diversity and population structure of wild and cultivated barley from West Asia and North Africa
    • Orabi J, Jahoor A, Backes G (2009) Genetic diversity and population structure of wild and cultivated barley from West Asia and North Africa. Plant Breeding 128: 606-614.
    • (2009) Plant Breeding , vol.128 , pp. 606-614
    • Orabi, J.1    Jahoor, A.2    Backes, G.3
  • 42
    • 35349019313 scopus 로고    scopus 로고
    • The importance of barley genetics and domestication in a global perspective
    • Pourkheirandish M, Komatsuda T (2007) The importance of barley genetics and domestication in a global perspective. Ann Bot 100: 999-1008.
    • (2007) Ann Bot , vol.100 , pp. 999-1008
    • Pourkheirandish, M.1    Komatsuda, T.2
  • 43
    • 60149084807 scopus 로고    scopus 로고
    • The nature of selection during plant domestication
    • Purugganan MD, Fuller DQ (2009) The nature of selection during plant domestication. Nature 457: 843-848.
    • (2009) Nature , vol.457 , pp. 843-848
    • Purugganan, M.D.1    Fuller, D.Q.2
  • 46
    • 79959859337 scopus 로고    scopus 로고
    • Analysis of & 1000 single nucleotide polymorphism in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level difference in diversity around domestication genes
    • Russell JR, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R (2011) Analysis of & 1000 single nucleotide polymorphism in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level difference in diversity around domestication genes. New Phytol 191: 564-578.
    • (2011) New Phytol , vol.191 , pp. 564-578
    • Russell, J.R.1    Dawson, I.K.2    Flavell, A.J.3    Steffenson, B.4    Weltzien, E.5    Booth, A.6    Ceccarelli, S.7    Grando, S.8    Waugh, R.9
  • 47
    • 37249022258 scopus 로고    scopus 로고
    • Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World
    • Saisho D, Purugganan MD (2007) Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. Genetics 177: 1765-1776.
    • (2007) Genetics , vol.177 , pp. 1765-1776
    • Saisho, D.1    Purugganan, M.D.2
  • 48
    • 79956117970 scopus 로고    scopus 로고
    • The domestication syndrome genes responsible for the major changes in plant form in the Triticeae crops
    • Sakuma S, Salomon B, Komatsuda T (2011) The domestication syndrome genes responsible for the major changes in plant form in the Triticeae crops. Plant Cell Physiol 52: 738-749.
    • (2011) Plant Cell Physiol , vol.52 , pp. 738-749
    • Sakuma, S.1    Salomon, B.2    Komatsuda, T.3
  • 50
    • 33748808111 scopus 로고    scopus 로고
    • Quantitative trait loci controlling agronomic traits in recombinant inbred lines from a cross of oriental- and occidental-type barley cultivars
    • Sameri M, Takeda K, Komatsuda T (2006) Quantitative trait loci controlling agronomic traits in recombinant inbred lines from a cross of oriental- and occidental-type barley cultivars. Breeding Sci 56: 243-252.
    • (2006) Breeding Sci , vol.56 , pp. 243-252
    • Sameri, M.1    Takeda, K.2    Komatsuda, T.3
  • 52
    • 0001089073 scopus 로고
    • The origin of cultivated barley
    • Takahashi R (1955) The origin of cultivated barley. Adv Genet 7: 227-266.
    • (1955) Adv Genet , vol.7 , pp. 227-266
    • Takahashi, R.1
  • 53
    • 79952226141 scopus 로고    scopus 로고
    • Molecular mapping of the short awn 2 (lks2) and dense spike 1 (dsp1) genes on barley chromosome 7H
    • Taketa S, Yao T, Sakurai Y, Miyake S, Ichii M (2011) Molecular mapping of the short awn 2 (lks2) and dense spike 1 (dsp1) genes on barley chromosome 7H. Breeding Sci 61: 80-85.
    • (2011) Breeding Sci , vol.61 , pp. 80-85
    • Taketa, S.1    Yao, T.2    Sakurai, Y.3    Miyake, S.4    Ichii, M.5
  • 54
    • 13844259318 scopus 로고    scopus 로고
    • On the origin of six-rowed barley with brittle rachis, agriocrithon [Hordeumvulgare ssp. f. agriocrithon (Åberg) Bowd.], based on a DNA marker closely linked to the vrs1 (six-row gene) locus
    • Tanno K, Takeda K (2004) On the origin of six-rowed barley with brittle rachis, agriocrithon [Hordeumvulgare ssp. f. agriocrithon (Åberg) Bowd.], based on a DNA marker closely linked to the vrs1 (six-row gene) locus. Theor Appl Genet 110: 145-150.
    • (2004) Theor Appl Genet , vol.110 , pp. 145-150
    • Tanno, K.1    Takeda, K.2
  • 55
    • 0346259936 scopus 로고    scopus 로고
    • A DNA marker closely linked to the vrs1 locus (row-type gene) indicates multiple origins of six-rowed cultivated barley (Hordeumvulgare L.)
    • Tanno K, Taketa S, Takeda K, Komatsuda T (2002) A DNA marker closely linked to the vrs1 locus (row-type gene) indicates multiple origins of six-rowed cultivated barley (Hordeumvulgare L.). Theor Appl Genet 104: 54-60.
    • (2002) Theor Appl Genet , vol.104 , pp. 54-60
    • Tanno, K.1    Taketa, S.2    Takeda, K.3    Komatsuda, T.4
  • 56
    • 77952936186 scopus 로고    scopus 로고
    • The central role of the VERNALIZATION1 gene in the vernalization response of cereals
    • Trevaskis B (2010) The central role of the VERNALIZATION1 gene in the vernalization response of cereals. Funct Plant Biol 37: 479-487.
    • (2010) Funct Plant Biol , vol.37 , pp. 479-487
    • Trevaskis, B.1
  • 57
    • 33745161353 scopus 로고    scopus 로고
    • Autonomous cultivation before domestication
    • Weiss E, Kislev ME, Hartmann A (2006) Autonomous cultivation before domestication. Science 312: 1608-1610.
    • (2006) Science , vol.312 , pp. 1608-1610
    • Weiss, E.1    Kislev, M.E.2    Hartmann, A.3
  • 58
    • 33644689111 scopus 로고    scopus 로고
    • The distribution, natural habitats and availability of wild cereals in relation to their domestication in the Near East: multiple events, multiple centres
    • Willcox G (2005) The distribution, natural habitats and availability of wild cereals in relation to their domestication in the Near East: multiple events, multiple centres. Veget Hist Archaeobot 14: 534-541.
    • (2005) Veget Hist Archaeobot , vol.14 , pp. 534-541
    • Willcox, G.1
  • 59
    • 0032999519 scopus 로고    scopus 로고
    • Monophyletic vs. polyphyletic origin of crops on which agriculture was founded in the Near East
    • Zohary D (1999) Monophyletic vs. polyphyletic origin of crops on which agriculture was founded in the Near East. Gen Res Crop Evol 46: 133-142.
    • (1999) Gen Res Crop Evol , vol.46 , pp. 133-142
    • Zohary, D.1


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