-
1
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M., Raes J., Pelletier E., Le Paslier D., Yamada T., Mende D.R., Fernandes G.R., Tap J., Bruls T., Batto J.M., Bertalan M., Borruel N., Casellas F., Fernandez L., Gautier L., Hansen T., Hattori M., Hayashi T., Kleerebezem M., Kurokawa K., Leclerc M., Levenez F., Manichanh C., Nielsen H.B., Nielsen T., Pons N., Poulain J., Qin J., Sicheritz-Ponten T., Tims S., Torrents D., Ugarte E., Zoetendal E.G., Wang J., Guarner F., Pedersen O., de Vos W.M., Brunak S., Dore J., Meta H.I.T.C., Antolin M., Artiguenave F., Blottiere H.M., Almeida M., Brechot C., Cara C., Chervaux C., Cultrone A., Delorme C., Denariaz G., Dervyn R., Foerstner K.U., Friss C., van de Guchte M., Guedon E., Haimet F., Huber W., van Hylckama-Vlieg J., Jamet A., Juste C., Kaci G., Knol J., Lakhdari O., Layec S., Le Roux K., Maguin E., Merieux A., Melo Minardi R., M'Rini C., Muller J.,zeer R., Parkhill J., Renault P., Rescigno M., Sanchez N., Sunagawa S., Torrejon A., Turner K., Vandemeulebrouck G., Varela E., Winogradsky Y., Zeller G., Weissenbach J., Ehrlich S.D., Bork P. Enterotypes of the human gut microbiome. Nature 2011, 473:174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
Bertalan, M.11
Borruel, N.12
Casellas, F.13
Fernandez, L.14
Gautier, L.15
Hansen, T.16
Hattori, M.17
Hayashi, T.18
Kleerebezem, M.19
Kurokawa, K.20
Leclerc, M.21
Levenez, F.22
Manichanh, C.23
Nielsen, H.B.24
Nielsen, T.25
Pons, N.26
Poulain, J.27
Qin, J.28
Sicheritz-Ponten, T.29
Tims, S.30
Torrents, D.31
Ugarte, E.32
Zoetendal, E.G.33
Wang, J.34
Guarner, F.35
Pedersen, O.36
de Vos, W.M.37
Brunak, S.38
Dore, J.39
Meta, H.I.T.C.40
Antolin, M.41
Artiguenave, F.42
Blottiere, H.M.43
Almeida, M.44
Brechot, C.45
Cara, C.46
Chervaux, C.47
Cultrone, A.48
Delorme, C.49
Denariaz, G.50
Dervyn, R.51
Foerstner, K.U.52
Friss, C.53
van de Guchte, M.54
Guedon, E.55
Haimet, F.56
Huber, W.57
van Hylckama-Vlieg, J.58
Jamet, A.59
Juste, C.60
Kaci, G.61
Knol, J.62
Lakhdari, O.63
Layec, S.64
Le Roux, K.65
Maguin, E.66
Merieux, A.67
Melo Minardi, R.68
M'Rini, C.69
Muller, J.70
Oozeer, R.71
Parkhill, J.72
Renault, P.73
Rescigno, M.74
Sanchez, N.75
Sunagawa, S.76
Torrejon, A.77
Turner, K.78
Vandemeulebrouck, G.79
Varela, E.80
Winogradsky, Y.81
Zeller, G.82
Weissenbach, J.83
Ehrlich, S.D.84
Bork, P.85
more..
-
2
-
-
75249107844
-
PyNAST: a flexible tool for aligning sequences to a template alignment
-
Caporaso J.G., Bittinger K., Bushman F.D., DeSantis T.Z., Andersen G.L., Knight R. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 2010, 26:266-267.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
DeSantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
3
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso J.G., Kuczynski J., Stombaugh J., Bittinger K., Bushman F.D., Costello E.K., Fierer N., Pena A.G., Goodrich J.K., Gordon J.I., Huttley G.A., Kelley S.T., Knights D., Koenig J.E., Ley R.E., Lozupone C.A., McDonald D., Muegge B.D., Pirrung M., Reeder J., Sevinsky J.R., Turnbaugh P.J., Walters W.A., Widmann J., Yatsunenko T., Zaneveld J., Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 2010, 7:335-336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
4
-
-
0002167746
-
Digestive and metabolic adaptations of arboreal marsupials for dealing with plant antinutrients and toxins
-
UNSW Press, Sydney, S. N.R., L. Hinds (Eds.)
-
Cork S.J., Foley W.J. Digestive and metabolic adaptations of arboreal marsupials for dealing with plant antinutrients and toxins. Recent Advances in Marsupial Biology 1997, 204-226. UNSW Press, Sydney. S. N.R., L. Hinds (Eds.).
-
(1997)
Recent Advances in Marsupial Biology
, pp. 204-226
-
-
Cork, S.J.1
Foley, W.J.2
-
5
-
-
0026312069
-
Digestion and nutrition in the koala: a review
-
Surrey Beatty, Sydney
-
Cork S.J., Sanson G.D. Digestion and nutrition in the koala: a review. Biology of the Koala 1990, 129-144. Surrey Beatty, Sydney.
-
(1990)
Biology of the Koala
, pp. 129-144
-
-
Cork, S.J.1
Sanson, G.D.2
-
6
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C., Cavalieri D., Di Paola M., Ramazzotti M., Poullet J.B., Massart S., Collini S., Pieraccini G., Lionetti P. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:14691-14696.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
Collini, S.7
Pieraccini, G.8
Lionetti, P.9
-
7
-
-
84877151034
-
Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer
-
de Oliveira M.N., Jewell K.A., Freitas F.S., Benjamin L.A., Totola M.R., Borges A.C., Moraes C.A., Suen G. Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer. Vet. Microbiol. 2013, 164:307-314.
-
(2013)
Vet. Microbiol.
, vol.164
, pp. 307-314
-
-
de Oliveira, M.N.1
Jewell, K.A.2
Freitas, F.S.3
Benjamin, L.A.4
Totola, M.R.5
Borges, A.C.6
Moraes, C.A.7
Suen, G.8
-
8
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis T.Z., Hugenholtz P., Larsen N., Rojas M., Brodie E.L., Keller K., Huber T., Dalevi D., Hu P., Andersen G.L. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 2006, 72:5069-5072.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
9
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
10
-
-
84878465280
-
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
-
Everard A., Belzer C., Geurts L., Ouwerkerk J.P., Druart C., Bindels L.B., Guiot Y., Derrien M., Muccioli G.G., Delzenne N.M., de Vos W.M., Cani P.D. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc. Natl. Acad. Sci. U. S. A. 2013, 110:9066-9071.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 9066-9071
-
-
Everard, A.1
Belzer, C.2
Geurts, L.3
Ouwerkerk, J.P.4
Druart, C.5
Bindels, L.B.6
Guiot, Y.7
Derrien, M.8
Muccioli, G.G.9
Delzenne, N.M.10
de Vos, W.M.11
Cani, P.D.12
-
11
-
-
38349049462
-
Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
-
Flint H.J., Bayer E.A., Rincon M.T., Lamed R., White B.A. Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat. Rev. Microbiol. 2008, 6:121-131.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 121-131
-
-
Flint, H.J.1
Bayer, E.A.2
Rincon, M.T.3
Lamed, R.4
White, B.A.5
-
12
-
-
28244463938
-
Interaction of gut microflora with tannins in feeds
-
Goel G., Puniya A.K., Aguilar C.N., Singh K. Interaction of gut microflora with tannins in feeds. Naturwissenschaften 2005, 92:497-503.
-
(2005)
Naturwissenschaften
, vol.92
, pp. 497-503
-
-
Goel, G.1
Puniya, A.K.2
Aguilar, C.N.3
Singh, K.4
-
13
-
-
0038179441
-
Desulfovibrio desulfuricans bacteremia and review of human Desulfovibrio infections
-
Goldstein E.J., Citron D.M., Peraino V.A., Cross S.A. Desulfovibrio desulfuricans bacteremia and review of human Desulfovibrio infections. J. Clin. Microbiol. 2003, 41:2752-2754.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 2752-2754
-
-
Goldstein, E.J.1
Citron, D.M.2
Peraino, V.A.3
Cross, S.A.4
-
14
-
-
84876562305
-
Shedding light on the microbial community of the macropod foregut using 454-amplicon pyrosequencing
-
Gulino L.M., Ouwerkerk D., Kang A.Y., Maguire A.J., Kienzle M., Klieve A.V. Shedding light on the microbial community of the macropod foregut using 454-amplicon pyrosequencing. PLoS ONE 2013, 8:e61463.
-
(2013)
PLoS ONE
, vol.8
-
-
Gulino, L.M.1
Ouwerkerk, D.2
Kang, A.Y.3
Maguire, A.J.4
Kienzle, M.5
Klieve, A.V.6
-
15
-
-
0034489614
-
Plant cellular and molecular responses to high salinity
-
Hasegawa P.M., Bressan R.A., Zhu J.K., Bohnert H.J. Plant cellular and molecular responses to high salinity. Annu. Rev. Plant Physiol. Plant Mol. Biol. 2000, 51:463-499.
-
(2000)
Annu. Rev. Plant Physiol. Plant Mol. Biol.
, vol.51
, pp. 463-499
-
-
Hasegawa, P.M.1
Bressan, R.A.2
Zhu, J.K.3
Bohnert, H.J.4
-
16
-
-
34447320433
-
A flexible digestive strategy accommodates the nutritional demands of reproduction in a free-living folivore the Koala (Phascolarctos cinereus)
-
Krockenberger A.K., Hume I.D. A flexible digestive strategy accommodates the nutritional demands of reproduction in a free-living folivore the Koala (Phascolarctos cinereus). Funct. Ecol. 2007, 21:748-756.
-
(2007)
Funct. Ecol.
, vol.21
, pp. 748-756
-
-
Krockenberger, A.K.1
Hume, I.D.2
-
18
-
-
79960004119
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
Letunic I., Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 2011, 39:W475-W478.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Letunic, I.1
Bork, P.2
-
19
-
-
33845901507
-
Microbial ecology: human gut microbes associated with obesity
-
Ley R.E., Turnbaugh P.J., Klein S., Gordon J.I. Microbial ecology: human gut microbes associated with obesity. Nature 2006, 444:1022-1023.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
20
-
-
52049092682
-
Worlds within worlds: evolution of the vertebrate gut microbiota
-
Ley R.E., Lozupone C.A., Hamady M., Knight R., Gordon J.I. Worlds within worlds: evolution of the vertebrate gut microbiota. Nat. Rev. Microbiol. 2008, 6:776-788.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.I.5
-
21
-
-
84878592844
-
Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus
-
Looft T., Levine U.Y., Stanton T.B. Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus. Int. J. Syst. Evol. Microbiol. 2012, 63:1960-1966.
-
(2012)
Int. J. Syst. Evol. Microbiol.
, vol.63
, pp. 1960-1966
-
-
Looft, T.1
Levine, U.Y.2
Stanton, T.B.3
-
22
-
-
33947269742
-
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
-
Lozupone C.A., Hamady M., Kelley S.T., Knight R. Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl. Environ. Microbiol. 2007, 73:1576-1585.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1576-1585
-
-
Lozupone, C.A.1
Hamady, M.2
Kelley, S.T.3
Knight, R.4
-
23
-
-
67651151152
-
The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age
-
Mariat D., Firmesse O., Levenez F., Guimaraes V., Sokol H., Dore J., Corthier G., Furet J.P. The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol. 2009, 9:123.
-
(2009)
BMC Microbiol.
, vol.9
, pp. 123
-
-
Mariat, D.1
Firmesse, O.2
Levenez, F.3
Guimaraes, V.4
Sokol, H.5
Dore, J.6
Corthier, G.7
Furet, J.P.8
-
24
-
-
31344464883
-
Targeted metabolite profiling provides a functional link among eucalypt taxonomy, physiology and evolution
-
Merchant A., Richter A., Popp M., Adams M. Targeted metabolite profiling provides a functional link among eucalypt taxonomy, physiology and evolution. Phytochemistry 2006, 67:402-408.
-
(2006)
Phytochemistry
, vol.67
, pp. 402-408
-
-
Merchant, A.1
Richter, A.2
Popp, M.3
Adams, M.4
-
25
-
-
33747854487
-
Functional myo-inositol catabolic genes of Bacillus subtilis Natto are involved in depletion of pinitol in Natto (fermented soybean)
-
Morinaga T., Yamaguchi M., Makino Y., Nanamiya H., Takahashi K., Yoshikawa H., Kawamura F., Ashida H., Yoshida K. Functional myo-inositol catabolic genes of Bacillus subtilis Natto are involved in depletion of pinitol in Natto (fermented soybean). Biosci. Biotechnol. Biochem. 2006, 70:1913-1920.
-
(2006)
Biosci. Biotechnol. Biochem.
, vol.70
, pp. 1913-1920
-
-
Morinaga, T.1
Yamaguchi, M.2
Makino, Y.3
Nanamiya, H.4
Takahashi, K.5
Yoshikawa, H.6
Kawamura, F.7
Ashida, H.8
Yoshida, K.9
-
26
-
-
52249099497
-
Adherence and invasion of Bacteroidales isolated from the human intestinal tract
-
Nakano V., Piazza R.M., Cianciarullo A.M., Bueris V., Santos M.F., Menezes M.A., Mendes-Ledesma M.R., Szulczewski V., Elias W.P., Pumbwe L., Wexler H., Avila-Campos M.J. Adherence and invasion of Bacteroidales isolated from the human intestinal tract. Clin. Microbiol. Infect. 2008, 14:955-963.
-
(2008)
Clin. Microbiol. Infect.
, vol.14
, pp. 955-963
-
-
Nakano, V.1
Piazza, R.M.2
Cianciarullo, A.M.3
Bueris, V.4
Santos, M.F.5
Menezes, M.A.6
Mendes-Ledesma, M.R.7
Szulczewski, V.8
Elias, W.P.9
Pumbwe, L.10
Wexler, H.11
Avila-Campos, M.J.12
-
27
-
-
0025240116
-
Formation of a clear zone on tannin-treated brain heart infusion agar by a Streptococcus sp. isolated from feces of koalas
-
Osawa R.O. Formation of a clear zone on tannin-treated brain heart infusion agar by a Streptococcus sp. isolated from feces of koalas. Appl. Environ. Microbiol. 1990, 56:829-831.
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 829-831
-
-
Osawa, R.O.1
-
28
-
-
0027132264
-
Microbiological studies of the intestinal microflora of the koala, Phascolarctos cinereus. 2. Pap, a special maternal feces consumed by juvenile koalas
-
Osawa R., Blanshard W.H., Ocallaghan P.G. Microbiological studies of the intestinal microflora of the koala, Phascolarctos cinereus. 2. Pap, a special maternal feces consumed by juvenile koalas. Aust. J. Zool. 1993, 41:611-620.
-
(1993)
Aust. J. Zool.
, vol.41
, pp. 611-620
-
-
Osawa, R.1
Blanshard, W.H.2
Ocallaghan, P.G.3
-
29
-
-
0029613747
-
Lonepinella koalarum gen. nov., sp. nov., a new tannin protein complex degrading bacterium
-
Osawa R., Rainey F., Fujisawa T., Lang E., Busse H.J., Walsh T.P., Stackebrandt E. Lonepinella koalarum gen. nov., sp. nov., a new tannin protein complex degrading bacterium. Syst. Appl. Microbiol. 1995, 18:368-373.
-
(1995)
Syst. Appl. Microbiol.
, vol.18
, pp. 368-373
-
-
Osawa, R.1
Rainey, F.2
Fujisawa, T.3
Lang, E.4
Busse, H.J.5
Walsh, T.P.6
Stackebrandt, E.7
-
30
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
-
Quast C., Pruesse E., Yilmaz P., Gerken J., Schweer T., Yarza P., Peplies J., Glockner F.O. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013, 41:D590-D596.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glockner, F.O.8
-
31
-
-
0038005028
-
Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources
-
Rautio M., Eerola E., Vaisanen-Tunkelrott M.L., Molitoris D., Lawson P., Collins M.D., Jousimies-Somer H. Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. Syst. Appl. Microbiol. 2003, 26:182-188.
-
(2003)
Syst. Appl. Microbiol.
, vol.26
, pp. 182-188
-
-
Rautio, M.1
Eerola, E.2
Vaisanen-Tunkelrott, M.L.3
Molitoris, D.4
Lawson, P.5
Collins, M.D.6
Jousimies-Somer, H.7
-
32
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder R., Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011, 27:863-864.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
33
-
-
84859747964
-
Bacterial biogeography of the human digestive tract
-
Stearns J.C., Lynch M.D., Senadheera D.B., Tenenbaum H.C., Goldberg M.B., Cvitkovitch D.G., Croitoru K., Moreno-Hagelsieb G., Neufeld J.D. Bacterial biogeography of the human digestive tract. Sci. Rep. 2011, 1:170.
-
(2011)
Sci. Rep.
, vol.1
, pp. 170
-
-
Stearns, J.C.1
Lynch, M.D.2
Senadheera, D.B.3
Tenenbaum, H.C.4
Goldberg, M.B.5
Cvitkovitch, D.G.6
Croitoru, K.7
Moreno-Hagelsieb, G.8
Neufeld, J.D.9
-
34
-
-
84879384339
-
Gut microbiota composition modifies fecal metabolic profiles in mice
-
Zhao Y., Wu J., Li J.V., Zhou N.Y., Tang H., Wang Y. Gut microbiota composition modifies fecal metabolic profiles in mice. J. Proteome Res. 2013, 12:2987-2999.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 2987-2999
-
-
Zhao, Y.1
Wu, J.2
Li, J.V.3
Zhou, N.Y.4
Tang, H.5
Wang, Y.6
-
35
-
-
54349126970
-
High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota
-
Zoetendal E.G., Rajilic-Stojanovic M., de Vos W.M. High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut 2008, 57:1605-1615.
-
(2008)
Gut
, vol.57
, pp. 1605-1615
-
-
Zoetendal, E.G.1
Rajilic-Stojanovic, M.2
de Vos, W.M.3
|