Bioremediation of PAH-contaminated soil with fungi - From laboratory to field scale

International Biodeterioration and Biodegradation

Volumn 86, Issue , 2014, Pages 238-247

  Winquist, Erika ^a   Björklöf, Katarina ^b   Schultz, Eija ^b   Räsänen, Markus ^a   Salonen, Kalle ^a   Anasonye, Festus ^c   Cajthaml, Tomáš ^d   Steffen, Kari T ^c   Jørgensen, Kirsten S ^b   Tuomela, Marja ^c  

^a AALTO UNIVERSITY   (Finland)

^b FINNISH ENVIRONMENT INSTITUTE   (Finland)

^c UNIVERSITY OF HELSINKI   (Finland)

^d INSTITUTE OF MICROBIOLOGY   (Czech Republic)

Author keywords

Bioremediation; Contaminated soil; Creosote; Fungi; Phanerochaete velutina; Polyaromatic hydrocarbons

Indexed keywords

CONTAMINATED SOILS; CREOSOTE; FIELD-SCALE EXPERIMENTS; GRAM-POSITIVE BACTERIUM; HIGH MOLECULAR WEIGHT; PERSISTENT ORGANIC COMPOUNDS; PHANEROCHAETE VELUTINA; POLYAROMATIC HYDROCARBONS;

BIOREMEDIATION; BIOTECHNOLOGY; EXPERIMENTS; FUNGI; HYDROCARBONS; SOIL POLLUTION;

POLYCYCLIC AROMATIC HYDROCARBONS;

BACTERIUM; BIOREMEDIATION; COMPOST; FIELD SURVEY; FUNGUS; GREEN MANURING; LABORATORY METHOD; PAH; SOIL POLLUTION;

BACTERIA (MICROORGANISMS); FUNGI; PHANEROCHAETE; PHANEROCHAETE VELUTINA; POSIBACTERIA;

EID: 84888046918     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2013.09.012     Document Type: Article

References (54)

1. Alén R. Structure and chemical composition of biomass feedstocks. Biorefining of Forest Resources 2011, 18-54. Bookwell Oy, Porvoo, Finland. R. Alén (Ed.).
2. Antizar-Ladislao B., Lopez-Real J.M., Beck A.J. Bioremediation of polycyclic aromatic hydrocarbon (PAH)-contaminated waste using composting approaches. Crit. Rev. Environ. Sci. Technol. 2004, 34:249-289.
3. Cajthaml T., Šašek V. Application of supercritical fluid extraction (SFE) to predict bioremediation efficacy of long-term composting of PAH-contaminated soil. Environ. Sci. Technol. 2005, 39:8448-8452.
4. Cajthaml T., Möder M., Kačer P., Šašek V., Popp P. Study of fungal degradation products of polycyclic aromatic hydrocarbons using gas chromatography with ion trap mass spectrometry detection. J.Chromatogr. A 2002, 974:213-222.
5. Cajthaml T., Bhatt M., Šašek V., Matějů V. Bioremediation of PAH-contaminated soil by composting: a case study. Folia Microbiol. 2002, 47:696-700.
6. Cajthaml T., Erbanová P., Šašek V., Möder M. Breakdown products on metabolic pathway of degradation of benz[a]anthracene by a ligninolytic fungus. Chemosphere 2006, 64:560-564.
7. Cebron A., Norini M., Beguiristain T., Leyval C. Real-time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα) genes from gram positive and gram negative bacteria in soil and sediment samples. J.Microbiol. Methodes. 2008, 73:148-159.
8. Covino S., Svobodová K., Čvančarová M., D'Annibale A., Petruccioli M., Federici F., Křesinová Z., Galli E., Cajthaml T. Inoculum carrier and contaminant bioavailability affect fungal degradation performances of PAH-contaminated solid matrices from a wood preservation plant. Chemosphere 2010, 79:855-864.
9. Čvančarová M., Křesinová Z., Cajthaml T. Influence of the bioaccessible fraction of polycyclic aromatic hydrocarbons on the ecotoxicity of historically contaminated soils. J. Hazard. Mater. 2013, 254-255:116-124.
10. Davis M.W., Glaser J.A., Evans J.W., Lamar R.T. Field evaluation of the lignin-degrading fungus Phanerochaete sordida to treat creosote-contaminated soil. Environ. Sci. Technol. 1993, 27:2572-2576.
11. Dorn P.B., Vipond T.E., Salanitro J.P., Wisniewski H.L. Assessment of the acute toxicity of crude oils in soils using earthworms, Microtox, and plants. Chemosphere 1998, 37:845-860.
12. Eggen T. Application of fungal substrate from commercial mushroom production - Pleurotus ostreatus - for bioremediation of creosote contaminated soil. Int. Biodeterior. Biodegr. 1999, 44:117-126.
13. European Community Regulation No 850/2004 of the European Parliament and of the Council of 29 April 2004 on Persistent Organic Pollutants and Amending Directive 79/117/EEC 2004, Online at. http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2004:158:0007:0049:EN:PDF.
14. Furuno S., Foss S., Wild E., Jones K.J., Semple K.T., Harms H., Wick L.Y. Mycelia promote active transport and spatial dispersion of polycyclic aromatic hydrocarbons. Environ. Sci. Technol. 2012, 46:5463-5470.
15. Haderlein A., Legros R., Ramsay B.A. Pyrene mineralization capacity increases with compost maturity. Biodegradation 2006, 17:293-302.
16. Harms H. Bioavailability and bioaccessibility as key factors in bioremediation. Comprehensive Biotechnology 2011, 83-94. Elsevier, Spain. second ed. M. Moo-Young, S. Agathos (Eds.).
17. Harms H., Schlosser D., Wick L.Y. Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nature Rev. Microbiol. 2011, 9:177-192.
18. Hatakka A. Biodegradation of lignin. Lignin, Humic Substances and Coal 2001, vol. 1:129-180. Wiley-VCH, Weinheim, Germany.
19. Hofrichter M., Scheibner K., Schneegaß I., Fritsche W. Enzymatic combustion of aromatic and aliphatic compounds by manganese peroxidase from Nematoloma frowardii. Appl. Environ. Microbiol. 1998, 64:399-404.
20. ISO 11465:1993 Soil Quality - Determination of Dry Matter and Water Content on a Mass Basis - Gravimetric Method 1993, International Standardization Organization.
21. ISO 18287:2006 Soil Quality - Determination of Polycyclic Aromatic Hydrocarbons (PAH) - Gas Chromatographic Method with Mass Spectrometric Detection (GC-MS) 2006, International Standardization Organization.
22. ISO 11268-1:2008 Soil Quality - Effects of Pollutants on Earthworms - Part 1: Determination of Acute Toxicity to Eisenia fetida/Eisenia andrei 2008, International Standardization Organization.
23. ISO 11268-2:2008 Soil Quality - Effects of Pollutants on Earthworms - Part 2: Determination of Effects on Reproduction of Eisenia fetida/Eisenia andrei 2008, International Standardization Organization.
24. ISO 11269-2:2008 Soil Quality - Determination of the Effects of Pollutants on Soil Flora - Part 2: Effects of Contaminated Soil on the Emergence and Early Growth of Higher Plants 2008, International Standardization Organization.
25. ISO 17126:2008 Soil Quality - Determination of the Effects of Pollutants on Soil Flora - Screening Test for Emergence of Lettuce Seedlings (Lactuca Sativa L) 2008, International Standardization Organization.
26. Johnsen A.R., Wick L.Y., Harms H. Principles of microbial PAH-degradation in soil. Environ. Pollut. 2005, 133:71-84.
27. Jørgensen K.S., Puustinen J., Suortti A.M. Bioremediation of petroleum hydrocarbon-contaminated soil by composting in biopiles. Environ. Pollut. 2000, 107:245-254.
28. Kästner M., Breuer-Jammali M., Mahro B. Enumeration and characterization of soil microflora from hydrocarbon contaminated soil sites able to mineralize polycyclic aromatic hydrocarbons (PAH). Appl. Microbiol. Biotechnol. 1994, 41:267-273.
29. 14C]anthracene in soil. Appl. Microbiol. Biotechnol. 1999, 65:1834-1842.
30. Khan F.I., Husain T., Hejazi R. An overview and analysis of site remediation technologies. J.Environ. Manage. 2004, 71:95-122.
31. Kitunen V., Valo R.J., Salkinoja-Salonen M. Contamination of soil around wood-preserving facilities by polychlorinated aromatic compounds. Environ. Sci. Technol. 1987, 21:96-101.
32. Kohlmeier S., Smits T.H.M., Ford R.M., Keel C., Harms H., Wick L. Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi. Environ. Sci. Technol. 2005, 39:4640-4646.
33. Lane D.J. 16S/23S rDNA sequencing. Nucleic Acid Techniques in Bacterial Systematic 1991, 115-175. John Wiley & Sons Ltd, West Sussex, UK. E. Stackebrandt, M. Goodfellow (Eds.).
34. Leonardi V., Šašek V., Petruccioli M., D'Annibale A., Erbanova P., Cajthaml T. Bioavailability modification and fungal biodegradation of PAHs in aged industrial soils. Int. Biodeter. Biodegr. 2007, 60:165-170.
35. Lladó S., Solanas A.M., de Lapuente J., Borràs M., Viñas M. Adiversified approach to evaluate biostimulation and bioaugmentation strategies for heavily-oil-contaminated soil. Sci. Total Environ. 2012, 435-436:262-269.
36. López Z., Vila J., Ortega-Calvo J.-J., Grifoll M. Simultaneous biodegradation of creosote polycyclic aromatic hydrocarbons by a pyrene-degrading Mycobacterium. Appl. Microbiol. Biotechnol. 2008, 78:165-172.
37. Lundstedt S., White P.A., Lemieux C.L., Lynes K.D., Lambert I.B., Öberg L., Haglund P., Tysklind M. Sources, fate, and toxic hazards of oxygenated polycyclic aromatic hydrocarbons (PAHs) at PAH-contaminated sites. Ambio 2007, 36:475-485.
38. Muyzer G., Waal E., Uitterlinden A. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction- amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
39. Niku-Paavola M.L., Karhunen E., Salola P., Raunio V. Ligninolytic enzymes of the white-rot fungus Phlebia radiata. Biochem. J. 1988, 254:877-883.
40. Pozdnyakova N.N. Involvement of the ligninolytic system of white-rot and litter-decomposing fungi in the degradation of polycyclic aromatic hydrocarbons. Biotechnol. Res. Int. 2012, 20. Article ID 243217.
41. Reichenberg F., Gosewinkel Karlson U., Gustafsson Ö., Long S.M., Pritchard P.H., Mayer P. Low accessibility and chemical activity of PAHs restrict bioremediation and risk of exposure in a manufactured gas plant soil. Environ. Pollut. 2010, 158:1214-1220.
42. Šnajdr J., Dobiášová P., Větrovský T., Valášková V., Alawi A., Boddy L., Baldrian P. Saprotrophic basidiomycete mycelia and their interspecific interactions affect the spatial distribution of extracellular enzymes in soil. FEMS Microbiol. Ecol. 2011, 78:80-90.
43. Šašek V., Bhatt M., Cajthaml T., Malachová K., Lednická D. Compost-mediated removal of polycyclic aromatic hydrocarbons from contaminated soil. Arch. Environ. Contam. Toxicol. 2003, 44:336-342.
44. Sack U., Heinze T.M., Deck J., Cerniglia C.E., Martens R., Zadrazil F., Fritsche W. Comparison of phenanthrene and pyrene degradation by different wood-decaying fungi. Appl. Environ. Microbiol. 1997, 63:3913-3925.
45. Saterbak A., Toy R.J., Wong D.C.L., McMain B.J., Williams M.P., Dorn P.B., Brzuzy L.P., Chai E.Y., Salanitro J.P. Ecotoxicological and analytical assessment of hydrocarbon-contaminated soils and application to ecological risk assessment. Environ. Toxicol. Chem. 1999, 18:1591-1607.
46. Semple K.T., Reid B.J., Fermor T.R. Impact of composting strategies on the treatment of soils contaminated with organic pollutants. Environ. Pollut. 2001, 112:269-283.
47. Steffen K.T., Tuomela M. Fungal soil bioremediation: development for large scale applications. Mycota X 2010, 451-467. Springer, Berlin, Heidelberg. second ed. K. Esser, M. Hofrichter (Eds.).
48. Tuomela M., Hatakka A. Oxidative fungal enzymes for bioremediation. Comprehensive Biotechnology 2011, 183-196. Elsevier, Spain. second ed. M. Moo-Young, S. Agathos (Eds.).
49. United States Environmental Protection Agency, US EPA Method 3550C:2007 Ultrasonic Extraction.
50. Valentin L., Kluczek-Turpeinen B., Oivanen P., Hatakka A., Steffen K.T., Tuomela M. Evaluation of basidiomycetous fungi for pretreatment of contaminated soil. J.Chem. Technol. Biotechnol. 2009, 84:851-858.
51. Valentin L., Kluczek-Turpeinen B., Willför S., Hemming J., Hatakka A., Steffen K.T., Tuomela M. Scots pine (Pinus sylvestris) bark composition and degradation by fungi: potential substrate for bioremediation. Bioresour. Technol. 2010, 101:2203-2209.
52. Wariishi H., Valli K., Gold M.H. Manganese (II) oxidation by manganese peroxidase from the basidiomycete Phanerochaete chrysosporium. Kinetic mechanism and role of chelators. J.Biol. Chem. 1992, 267:23688-23695.
53. Williamson D.G., Loehr R.C., Kimura Y. Release of chemicals from contaminated soils. J.Soil Contam. 1998, 7:543-558.
54. Winquist E., Valentin L., Moilanen U., Leisola M., Hatakka A., Tuomela M., Steffen K.T. Development of a fungal pre-treatment process for reduction of organic matter in contaminated soil. J.Chem. Technol. Biotechnol. 2009, 84:845-850.