Transcriptional targets of Foxd3 in murine ES cells

Stem Cell Research

Volumn 12, Issue 1, 2014, Pages 233-240

  Plank, Jennifer L ^a,b   Suflita, Michael T ^a,b   Galindo, Cristi L ^b   Labosky, Patricia A ^a,b,c  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b VANDERBILT UNIVERSITY   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR FOSB; TRANSCRIPTION FACTOR FOXD3; TRANSCRIPTION FACTOR PMAIP 1; TRANSCRIPTION FACTOR SAFB; TRANSCRIPTION FACTOR SMARCD 3; TRANSCRIPTION FACTOR SOX 15; TRANSCRIPTION FACTOR SOX4; UNCLASSIFIED DRUG;

ARTICLE; BONE DEVELOPMENT; CONTROLLED STUDY; EMBRYONIC STEM CELL; HUMAN; HUMAN CELL; MUSCLE DEVELOPMENT; ORGANOGENESIS; PRIORITY JOURNAL; PROTEIN TARGETING; TISSUE DIFFERENTIATION;

ANIMALS; CELL DIFFERENTIATION; CELL LINE; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOMAL PROTEINS, NON-HISTONE; CLUSTER ANALYSIS; EMBRYONIC STEM CELLS; FORKHEAD TRANSCRIPTION FACTORS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MATRIX ATTACHMENT REGION BINDING PROTEINS; MICE; MUSCLE PROTEINS; MUSCLE, SKELETAL; PROTO-ONCOGENE PROTEINS C-BCL-2; PROTO-ONCOGENE PROTEINS C-FOS; REPRESSOR PROTEINS; SOX TRANSCRIPTION FACTORS; SOXC TRANSCRIPTION FACTORS;

EID: 84888021041     PISSN: 18735061     EISSN: 18767753     Source Type: Journal    
DOI: 10.1016/j.scr.2013.10.008     Document Type: Article

References (48)

1. Liu Y., Labosky P.A. Regulation of embryonic stem cell self-renewal and pluripotency by Foxd3. Stem Cells 2008, 26:2475-2484.
2. Yu J., Vodyanic M.A., Smuga-Otto K., Antosiewicz-Bourget J., Frane J.L., Tian S., et al. Induced pluripotent stem cell lines derived from human somatic cells. Science 2007, 318:1917-1920.
3. Hanna L.A., Foreman R.K., Tarasenko I.A., Kessler D.S., Labosky P.A. Requirement for Foxd3 in maintaining pluripotent cells of the early mouse embryo. Genes Dev. 2002, 16:2650-2661.
4. Mundell N.A., Plank J.L., LeGrone A.W., Frist A.Y., Zhu L., Shin M.K., et al. Enteric nervous system specific deletion of Foxd3 disrupts glial cell differentiation and activates compensatory enteric progenitors. Dev. Biol. 2012, 363:373-387.
5. Mundell N.A., Labosky P.A. Neural crest stem cell multipotency requires Foxd3 to maintain neural potential and repress mesenchymal fates. Development 2011, 138:641-652.
6. Teng L., Mundell N.A., Frist A.Y., Wang Q., Labosky P.A. Requirement for Foxd3 in the maintenance of neural crest progenitors. Development 2008, 135:1615-1624.
7. Tompers D.M., Foreman R.K., Wang Q., Kumanova M., Labosky P.A. Foxd3 is required in the trophoblast progenitor cell lineage of the mouse embryo. Dev. Biol. 2005, 285:126-137.
8. Liber D., Domaschenz R., Holmqvist P.H., Mazzarella L., Georgiou A., Leleu M., et al. Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage. Cell Stem Cell 2010, 7:114-126.
9. Xu J., Pope S.D., Jazirehi A.R., Attema J.L., Papathanasiou P., Watts J.A., et al. Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:12377-12382.
10. Nagy A. Manipulating the Mouse Embryo: A Laboratory Manual, VIII, 764 p 2003, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
11. Samuelson L.C., Metzger J.M. Differentiation of embryonic stem (ES) cells using the hanging drop method. CSH Protoc. 2006, 2. pii: pdb.prot4485.
12. -δδCT) method. Methods 2001, 25:402-408.
13. Bolstad B.M., Irizarry R.A., Astrand M., Speed T.P. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193.
14. Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
15. Bellosta P., Iwahori A., Plotnikov A.N., Eliseenkova A.V., Basilico C., Mohammadi M. Identification of receptor and heparin binding sites in fibroblast growth factor 4 by structure-based mutagenesis. Mol. Cell. Biol. 2001, 21:5946-5957.
16. Haegel H., Larue L., Ohsugi M., Fedorov L., Herrenknecht K., Kemler R. Lack of beta-catenin affects mouse development at gastrulation. Development 1995, 121:3529-3537.
17. Feldman B., Poueymirou W., Papaioannou V.E., DeChiara T.M., Goldfarb M. Requirement of FGF-4 for postimplantation mouse development. Science 1995, 267:246-249.
18. Lee H.C., Huang H.Y., Lin C.Y., Chen Y.H., Tsai H.J. Foxd3 mediates zebrafish myf5 expression during early somitogenesis. Dev. Biol. 2006, 290:359-372.
19. Thomas A.J., Erickson C.A. FOXD3 regulates the lineage switch between neural crest-derived glial cells and pigment cells by repressing MITF through a non-canonical mechanism. Development 2009, 136:1849-1858.
20. Pan G., Li J., Zhou Y., Zheng H., Pei D. A negative feedback loop of transcription factors that controls stem cell pluripotency and self-renewal. FASEB J. 2006, 20:1730-1732.
21. Steiner A.B., Engleka M.J., Lu Q., Piwarzyk E.C., Yaklichkin S., Lefebvre J.L., et al. FoxD3 regulation of Nodal in the Spemann organizer is essential for Xenopus dorsal mesoderm development. Development 2006, 133:4827-4838.
22. Yaklichkin S., Steiner A.B., Lu Q., Kessler D.S. FoxD3 and Grg4 physically interact to repress transcription and induce mesoderm in Xenopus. J. Biol. Chem. 2007, 282:2548-2557.
23. Beranger F., Mejean C., Moniot B., Berta P., Vandromme M. Muscle differentiation is antagonized by SOX15, a new member of the SOX protein family. J. Biol. Chem. 2000, 275:16103-16109.
24. Lee H.J., Göring W., Ochs M., Mühlfeld C., Steding G., Paprotta I., et al. Sox15 is required for skeletal muscle regeneration. Mol. Cell. Biol. 2004, 24:8428-8436.
25. Savage J., Conley A.J., Blais A., Skerjanc I.S. SOX15 and SOX7 differentially regulate the myogenic program in P19 cells. Stem Cells 2009, 27:1231-1243.
26. Rudnicki M.A., Schnegelsberg P.N., Stead R.H., Braun T., Arnold H.H., Jaenish R. MyoD or Myf-5 is required for the formation of skeletal muscle. Cell 1993, 75:1351-1359.
27. Kuang S., Kuroda K., Le Grand F., Rudnicki M.A. Asymmetric self-renewal and commitment of satellite stem cells in muscle. Cell 2007, 129:999-1010.
28. Maruyama M., Ichisaka T., Nakagawa M., Yamanaka S. Differential roles for Sox15 and Sox2 in transcriptional control in mouse embryonic stem cells. J. Biol. Chem. 2005, 280:24371-24379.
29. Arduini B.L., Brivanlou A.H. Modulation of FOXD3 activity in human embryonic stem cells directs pluripotency and paraxial mesoderm fates. Stem Cells 2012, 30:2188-2198.
30. Epstein J.A., Lam P., Jepeal L., Maas R.L., Shapiro D.N. Pax3 inhibits myogenic differentiation of cultured myoblast cells. J. Biol. Chem. 1995, 270:11719-11722.
31. Young A.P., Wagers A.J. Pax3 induces differentiation of juvenile skeletal muscle stem cells without transcriptional upregulation of canonical myogenic regulatory factors. J. Cell Sci. 2010, 123:2632-2639.
32. Schilham M.W., Oosterwegel M.A., Moerer P., Ya J., de Boer P.A., van de Wetering M., et al. Defects in cardiac outflow tract formation and pro-B-lymphocyte expansion in mice lacking Sox-4. Nature 1996, 380:711-714.
33. Ya J., Schilham M.W., de Boer P.A., Moorman A.F., Clevers H., Lamers W.H. Sox4-deficiency syndrome in mice is an animal model for common trunk. Circ. Res. 1998, 83:986-994.
34. Maschhoff K.L., Anziano P.Q., Ward P., Baldwin H.S. Conservation of Sox4 gene structure and expression during chicken embryogenesis. Gene 2003, 320:23-30.
35. Nelms B.L., Pfaltzgraff E.R., Labosky P.A. Functional interaction between Foxd3 and Pax3 in cardiac neural crest development. Genesis 2011, 49:10-23.
36. Sabatakos G., Sims N.A., Chen J., Aoki K., Kelz M.B., Amling M., et al. Overexpression of DeltaFosB transcription factor(s) increases bone formation and inhibits adipogenesis. Nat. Med. 2000, 6:985-990.
37. Forcales S.V., Albini S., Giordani L., Malecova B., Cignolo L., Chernov A., et al. Signal-dependent incorporation of MyoD-BAF60c into Brg1-based SWI/SNF chromatin-remodelling complex. EMBO J. 2012, 31:301-316.
38. Ochi H., Hans S., Westerfield M. Smarcd3 regulates the timing of zebrafish myogenesis onset. J. Biol. Chem. 2008, 283:3529-3536.
39. Lamba D.A., Hayes S., Karl M.O., Reh T. Baf60c is a component of the neural progenitor-specific BAF complex in developing retina. Dev. Dyn. 2008, 237:3016-3023.
40. Huerta M., Muñoz R., Tapia R., Soto-Reyes E., Ramírez L., Recillas-Targa F., et al. Cyclin D1 is transcriptionally down-regulated by ZO-2 via an E box and the transcription factor c-Myc. Mol. Biol. Cell 2007, 18:4826-4836.
41. Tapia R., Huerta M., Islas S., Avila-Flores A., Lopez-Bayghen E., Weiske J., et al. Zona occludens-2 inhibits cyclin D1 expression and cell proliferation and exhibits changes in localization along the cell cycle. Mol. Biol. Cell 2009, 20:1102-1117.
42. Debril M.B., Dubuquoy L., Feige J.N., Wahli W., Desvergne B., Auwerx J., et al. Scaffold attachment factor B1 directly interacts with nuclear receptors in living cells and represses transcriptional activity. J. Mol. Endocrinol. 2005, 35:503-517.
43. Lee Y.B., Colley S., Norman M., Biamonti G., Uney J.B. SAFB re-distribution marks steps of the apoptotic process. Exp. Cell Res. 2007, 313:3914-3923.
44. Chan C.W., Lee Y.B., Uney J., Flynn A., Tobias J.H., Norman M. A novel member of the SAF (scaffold attachment factor)-box protein family inhibits gene expression and induces apoptosis. Biochem. J. 2007, 407:355-362.
45. Li J., Lee B., Lee A.S. Endoplasmic reticulum stress-induced apoptosis: multiple pathways and activation of p53-up-regulated modulator of apoptosis (PUMA) and NOXA by p53. J. Biol. Chem. 2006, 281:7260-7270.
46. Oda E., Ohki R., Murasawa H., Nemoto J., Shibue T., Yamashita T., et al. Noxa, a BH3-only member of the Bcl-2 family and candidate mediator of p53-induced apoptosis. Science 2000, 288:1053-1058.
47. Yakovlev A.G., Di Giovanni S., Wang G., Liu W., Stoica B., Faden A.I. BOK and NOXA are essential mediators of p53-dependent apoptosis. J. Biol. Chem. 2004, 279:28367-28374.
48. Suflita M.T., Labosky P.A., Ess K.C. Foxd3 is indispensable for murine iPSC formation 2013, Unpublished results.