Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 32, Issue 12, 2013, Pages 1571-1578

  Richter, S S ^a   Sercia, L ^a   Branda, J A ^b   Burnham, C A D ^c   Bythrow, M ^e   Ferraro, M J ^b   Garner, O B ^f   Ginocchio, C C ^e,g   Jennemann, R ^d   Lewinski, M A ^f   Manji, R ^e   Mochon, A B ^f   Rychert, J A ^b   Westblade, L F ^c,g   Procop, G W ^a  

^a LERNER RESEARCH INSTITUTE   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d BARNES JEWISH HOSPITAL   (United States)

^e North Shore LIJ Health System Laboratories ^*  (United States)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g DONALD AND BARBARA ZUCKER SCHOOL OF MEDICINE AT HOFSTRA NORTHWELL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA CYANO 4 HYDROXYCINNAMIC ACID; RNA 16S;

ACCURACY; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CITROBACTER KOSERI; CONTROLLED STUDY; ENTEROBACTER AEROGENES; ENTEROBACTER CANCEROGENUS; ENTEROBACTERIACEAE; ESCHERICHIA HERMANNII; GENE SEQUENCE; HAFNIA ALVEI; INTERMETHOD COMPARISON; KLEBSIELLA OXYTOCA; MASS SPECTROMETER; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; OBESUMBACTERIUM PROTEUS; PANTOEA AGGLOMERANS; PHENOTYPE; PRIORITY JOURNAL; RAOULTELLA ORNITHINOLYTICA; SPECIES DIFFERENTIATION;

BACTERIAL TYPING TECHNIQUES; ENTEROBACTERIACEAE; ENTEROBACTERIACEAE INFECTIONS; HUMANS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 84887989564     PISSN: 09349723     EISSN: 14354373     Source Type: Journal    
DOI: 10.1007/s10096-013-1912-y     Document Type: Article

References (30)

1. Karas M, Bachmann D, Hillenkamp F (1985) Influence of the wavelength in high-irradiance ultraviolet laser desorption mass spectrometry of organic molecules. Anal Chem 57:2935-2939
2. Karas M, Bachmann D, Bahr U, Hillenkamp F (1987) Matrix-assisted ultraviolet laser desorption of non-volatile compounds. Int J Mass Spectrom Ion Proc 78:53-68
3. Lay JO Jr (2001) MALDI-TOF mass spectrometry of bacteria. Mass Spectrom Rev 20:172-194
4. Tanaka K, Waki H, Ido Y, Akita S, Yoshida Y, Yoshida T (1988) Protein and polymer analyses up to m/z 100 000 by laser ionization time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 2:151-153
5. Welker M, Moore ERB (2011) Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology. Syst Appl Microbiol 34:2-11
6. Conway GC, Smole SC, Sarracino DA, Arbeit RD, Leopold PE (2001) Phyloproteomics: species identification of Enterobacteriaceae using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Mol Microbiol Biotechnol 3:103-112
7. Abbott SL (2011) Klebsiella, Enterobacter, Citrobacter, Serratia, Plesiomonas, and other Enterobacteriaceae. In: Versalovic J, Carroll KC, Funke G, Jorgensen JH, Landry ML, Warnock DW (eds) Manual of clinical microbiology, 10th edn. ASM Press, Washington DC, pp 639-657
8. Nordmann P, Naas T, Poirel L (2011) Global spread of carbapenemase- producing Enterobacteriaceae. Emerg Infect Dis 17:1791-1798
9. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2011) GenBank. Nucleic Acids Res 39:D32-D37
10. Devulder G, Perrière G, Baty F, Flandrois JP (2003) BIBI, a bioinformatics bacterial identification tool. J Clin Microbiol 41:1785-1787
11. Clinical and Laboratory Standards Institute (CLSI) (2008) Interpretive criteria for identification of bacteria and fungi by DNA target sequencing; Approved guideline. CLSI document MM18-A. CLSI, Wayne, PA, pp 25-29
12. Clarridge JE III (2004) Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin Microbiol Rev 17:840-862
13. Janda JM, Abbott SL (2007) 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J Clin Microbiol 45:2761-2764
14. Johnson JR (2000) Shigella and Escherichia coli at the crossroads: machiavellian masqueraders or taxonomic treachery? J Med Microbiol 49:583-585
15. van den Beld MJ, Reubsaet FA (2012) Differentiation between Shigella, enteroinvasive Escherichia coli (EIEC) and noninvasive Escherichia coli. Eur J Clin Microbiol Infect Dis 31:899-904
16. Nataro JP, Bopp CA, Fields PI, Kaper JB, Strockbine NA (2011) Escherichia, Shigella, and Salmonella. In: Versalovic J, Carroll KC, Funke G, Jorgensen JH, Landry ML, Warnock DW (eds) Manual of clinical microbiology, 10th edn. ASM Press, Washington DC, pp 603-626
17. Sharma M, Dogra BB, Misra R, Gandham N, Sardar M, Jadhav S (2012) Multidrug resistant Pantoea agglomerans in a patient with septic arthritis - a rare report from India. Int J Microbiol Res 4:263-265
18. Janda JM, Abbott SL, Cheung WK, Hanson DF (1994) Biochemical identification of citrobacteria in the clinical laboratory. J Clin Microbiol 32:1850-1854
19. Paauw A, Caspers MP, Schuren FH, Leverstein-van Hall MA, Delétoile A, Montijn RC, Verhoef J, Fluit AC (2008) Genomic diversity within the Enterobacter cloacae complex. PLoS One 3:e3018
20. Dieckmann R, Malorny B (2011) Rapid screening of epidemiologically important Salmonella enterica subsp. enterica serovars by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl Environ Microbiol 77:4136-4146
21. Kuhns M, Zautner AE, Rabsch W, Zimmermann O, Weig M, Bader O, Groß U (2012) Rapid discrimination of Salmonella enterica serovar Typhi from other serovars by MALDI-TOF mass spectrometry. PLoS One 7:e40004
22. Cherkaoui A, Hibbs J, Emonet S, Tangomo M, Girard M, Francois P, Schrenzel J (2010) Comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry methods with conventional phenotypic identification for routine identification of bacteria to the species level. J Clin Microbiol 48:1169-1175
23. Saffert RT, Cunningham SA, Ihde SM, Jobe KEM, Mandrekar J, Patel R (2011) Comparison of Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometer to BD Phoenix automated microbiology system for identification of gram-negative bacilli. J Clin Microbiol 49:887-892
24. Drancourt M, Bollet C, Carta A, Rousselier P (2001) Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int J Syst Evol Microbiol 51:925-932
25. Bizzini A, Durussel C, Bille J, Greub G, Prod'hom G (2010) Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. J Clin Microbiol 48:1549-1554
26. Martiny D, Busson L, Wybo I, El Haj RA, Dediste A, Vandenberg O (2012) Comparison of the Microflex LT and Vitek MS systems for routine identification of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 50:1313-1325
27. Gaillot O, Blondiaux N, Loïez C, Wallet F, Lemaître N, Herwegh S, Courcol RJ (2011) Cost-effectiveness of switch to matrix-assisted laser desorption ionization-time of flight mass spectrometry for routine bacterial identification. J Clin Microbiol 49:4412
28. Tan KE, Ellis BC, Lee R, Stamper PD, Zhang SX, Carroll KC (2012) Prospective evaluation of a matrix-assisted laser desorption ionization-time of flight mass spectrometry system in a hospital clinical microbiology laboratory for identification of bacteria and yeasts: a bench-by-bench study for assessing the impact on time to identification and cost-effectiveness. J Clin Microbiol 50:3301-3308
29. Neville SA, Lecordier A, Ziochos H, Chater MJ, Gosbell IB, Maley MW, van Hal SJ (2011) Utility of matrix-assisted laser desorption ionization-time of flight mass spectrometry following introduction for routine laboratory bacterial identification. J Clin Microbiol 49:2980-2984
30. Seng P, Drancourt M, Gouriet F, La Scola B, Fournier P-E, Rolain JM, Raoult D (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49:543-551