The virtual skeleton database: An open access repository for biomedical research and collaboration

Journal of Medical Internet Research

Volumn 15, Issue 11, 2013, Pages

  Kistler, Michael ^a   Bonaretti, Serena ^a,b   Pfahrer, Marcel ^c   Niklaus, Roman ^c   Büchler, Philippe ^a  

^a UNIVERSITY OF BERN   (Switzerland)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c BERN UNIVERSITY OF APPLIED SCIENCES   (Switzerland)

Author keywords

Computer assisted; Demographic analysis; Image processing; Internet; Medical informatics; Statistical models

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; COMPUTER-ASSISTED; COOPERATION; DEMOGRAPHY; FACTUAL DATABASE; HUMAN; IMAGE PROCESSING; INTERNET; MEDICAL INFORMATICS; MEDICAL RESEARCH; STATISTICAL MODELS;

COMPUTER-ASSISTED; DEMOGRAPHIC ANALYSIS; IMAGE PROCESSING; INTERNET; MEDICAL INFORMATICS; STATISTICAL MODELS;

ACCESS TO INFORMATION; BIOMEDICAL RESEARCH; COOPERATIVE BEHAVIOR; DATABASES, FACTUAL; HUMANS;

EID: 84887977089     PISSN: None     EISSN: 14388871     Source Type: Journal    
DOI: 10.2196/jmir.2930     Document Type: Article

References (36)

1. Cootes TF, Cooper DH, Taylor CJ, Graham J. A trainable method of parametric shape description. : BMVA Press; 1991 Presented at: British Machine Vision Conference; 1991; London Limited p. 8.1-8.8 URL: http://www.bmva.org/ bmvc/1991/bmvc-91-008.html [WebCite Cache] [doi: 10.5244/C.5.8]
2. Cootes T, Hill A, Taylor C, Haslam J. Use of active shape models for locating structures in medical images. Image and Vision Computing 1994 Jul;12(6):355-365. [doi: 10.1016/0262-8856(94)90060-4]
3. Hawkes DJ, Barratt D, Blackall JM, Chan C, Edwards PJ, Rhode K, et al. Tissue deformation and shape models in image-guided interventions: a discussion paper. Med Image Anal 2005 Apr;9(2):163-175. [doi: 10.1016/j.media.2004.11.007] [Medline: 15721231]
4. Kozic N, Weber S, Büchler P, Lutz C, Reimers N, González Ballester MA, et al. Optimisation of orthopaedic implant design using statistical shape space analysis based on level sets. Med Image Anal 2010 Jun;14(3):265-275. [doi: 10.1016/j.media.2010.02.008] [Medline: 20359938]
5. Zheng G, Gollmer S, Schumann S, Dong X, Feilkas T, González Ballester MA. A 2D/3D correspondence building method for reconstruction of a patient-specific 3D bone surface model using point distribution models and calibrated X-ray images. Med Image Anal 2009 Dec;13(6):883-899. [doi: 10.1016/j.media.2008.12.003] [Medline: 19162529]
6. Schumann S, Liu L, Tannast M, Bergmann M, Nolte LP, Zheng G. An integrated system for 3D hip joint reconstruction from 2D X-rays: a preliminary validation study. Ann Biomed Eng 2013 Oct;41(10):2077-2087. [doi: 10.1007/s10439-013-0822-6] [Medline: 23670657]
7. Heimann T, Meinzer HP. Statistical shape models for 3D medical image segmentation: a review. Med Image Anal 2009 Aug;13(4):543-563. [doi: 10.1016/j.media.2009.05.004] [Medline: 19525140]
8. Bauer S, Wiest R, Nolte LP, Reyes M. A survey of MRI-based medical image analysis for brain tumor studies. Phys Med Biol 2013 Jul 7;58(13):R97-129. [doi: 10.1088/0031-9155/58/13/R97] [Medline: 23743802]
9. Albrecht T, Luthi M, Vetter T. A statistical deformation prior for non-rigid imageshape registration. Anchorage: IEEE; 2008 Presented at: IEEE Conference on Computer VisionPattern Recognition; 2008; Anchorage p. 1-8. [doi: 10.1109/CVPR.2008.4587394]
10. Bryan R, Nair PB, Taylor M. Use of a statistical model of the whole femur in a large scale, multi-model study of femoral neck fracture risk. J Biomech 2009 Sep 18;42(13):2171-2176. [doi: 10.1016/j.jbiomech.2009.05.038] [Medline: 19646700]
11. Bryan R, Nair PB, Taylor M. Influence of femur size and morphology on load transfer in the resurfaced femoral head: A large scale, multi-subject finite element study. J Biomech 2012 Jul 26;45(11):1952-1958. [doi: 10.1016/j.jbiomech.2012.05.015] [Medline: 22704609]
12. Bou-Sleiman H, Ritacco LE, Nolte LP, Reyes M. Minimization of intra-operative shaping of orthopaedic fixation plates: a population-based design. Med Image Comput Comput Assist Interv 2011;14(Pt 2):409-416. [Medline: 21995055]
13. Liu BJ, Huang HK, Cao F, Zhou MZ, Zhang J, Mogel G. Informatics in radiology (infoRAD): A complete continuous-availability PACS archive server. Radiographics 2004;24(4):1203-1209 [FREE Full text] [doi: 10.1148/rg.244035051] [Medline: 15256640]
14. Hood MN, Scott H. Introduction to picture archive and communication systems. J Radiol Nurs 2006 Sep;25(3):69-74. [doi: 10.1016/j.jradnu.2006.06.003]
15. DSpace, an open-source solution for accessing, managing and preserving scholarly works. URL: http://www.dspace.org/[accessed 2013-07-30] [WebCite Cache ID 6IUdfqB0p]
16. Staples T, Wayland R, Payette S. The Fedora Project. D-Lib Magazine 2003 Apr;9(4):-. [doi: 10.1045/april2003-staples]
17. EPrints. The original institutional repository solution. URL: http://www.eprints.org/us/[accessed 2013-07-19] [WebCite Cache ID 6IE9pVcpm]
18. Marcus DS, Olsen TR, Ramaratnam M, Buckner RL. The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data. Neuroinformatics 2007 Jan;5(1):11-34. [Medline: 17426351]
19. Jomier J, Aylward SR, Marion C, Lee J, Styner M. A digital archiving systemdistributed server-side processing of large datasets. In: Proc. SPIE. 2009 Presented at: Medical Imaging 2009: Advanced PACS-based Imaging Informatics and Therapeutic Applications; 2009; Lake Buena Vista URL: http://dx.doi.org/10. 1117/12.812227 [WebCite Cache] [doi: 10.1117/12.812227]
20. Living human project. URL: http://www.livinghuman.org/[accessed 2013-07-19] [WebCite Cache ID 6IE3fXdz7]
21. Internet Brain Segementation Repository. 2009. URL: http://www.cma.mgh. harvard.edu/ibsr/index.html [accessed 2013-10-24] [WebCite Cache ID 6KcBA2Cy5]
22. Bootstrap. 2013. Sleek, intuitive, and powerful front-end framework for faster and easier web development URL: http://getbootstrap.com/2.3.2/[accessed 2013-07-22] [WebCite Cache ID 6IIlURr0W]
23. JQuery. The Write Less, Do More, JavaScript Library URL: http://jquery.com/[accessed 2013-07-30] [WebCite Cache ID 6IUeDur35]
24. Rosse C, Mejino J. A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J Biomed Inform 2003 Dec;36(6):478-500. [doi: 10.1016/j.jbi.2003.11.007] [Medline: 14759820]
25. Lüthi M, Albrecht T, Gass T, Goksel O, Kistler M, Bousleiman H, et al. Statismo - A framework for PCA based statistical models. The Insight Journal 2012;1:1-18 [FREE Full text] [WebCite Cache]
26. Ballester Gonzalez MA. 2013. Hear-EU - High-resolution image-based computational inner ear modelling for surgical planning of cochlear implantation URL: http://www.hear-eu.eu/[accessed 2013-07-19] [WebCite Cache ID 6IEA0rt1y]
27. Dalet D. D-Maps. URL: http://d-maps.com/carte.php?num-car=30074&lang= en [accessed 2013-07-22] [WebCite Cache ID 6IIldkzvT]
28. Bonaretti S. Statistical models of shape and density for population-based analysis of bone mechanics with applications to fracture risk assessment and implant. In: Thesis. Bern: University of Bern; 2012.
29. Seiler C, Pennec X, Ritacco L, Reyes M. Femur specific polyaffine model to regularize the log-domain demons registration. In: Proceedings of SPIE. 2011 Presented at: Medical Imaging 2011; 2011; Lake Buena Vista. [doi: 10.1117/12.878316]
30. Heller MO, Bergmann G, Kassi JP, Claes L, Haas NP, Duda GN. Determination of muscle loading at the hip joint for use in pre-clinical testing. J Biomech 2005 May;38(5):1155-1163. [doi: 10.1016/j.jbiomech.2004.05.022] [Medline: 15797596]
31. Speirs AD, Heller MO, Duda GN, Taylor WR. Physiologically based boundary conditions in finite element modelling. J Biomech 2007 Jan;40(10):2318-2323. [doi: 10.1016/j.jbiomech.2006.10.038] [Medline: 17166504]
32. Morgan EF, Bayraktar HH, Keaveny TM. Trabecular bone modulus-density relationships depend on anatomic site. J Biomech 2003 Jul;36(7):897-904. [Medline: 12757797]
33. Schileo E, Taddei F, Malandrino A, Cristofolini L, Viceconti M. Subject-specific finite element models can accurately predict strain levels in long bones. J Biomech 2007 Jan;40(13):2982-2989. [doi: 10.1016/j.jbiomech.2007. 02.010] [Medline: 17434172]
34. Bergmann G, Graichen F, Rohlmann A, Westerhoff P, Heinlein B, Bender A, et al. Design and calibration of load sensing orthopaedic implants. J Biomech Eng 2008 Apr;130(2):021009. [doi: 10.1115/1.2898831] [Medline: 18412496]
35. Howden R. Gray's Anatomy. London: Chancellor Press; 1985.
36. Menze B, Jakab A, Bauer S, Reyes M, Prastawa M, van Leemput K. BRATS 2012. 2012. MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation URL: http://www2.imm.dtu.dk/projects/BRATS2012/[accessed 2013-10-25] [WebCite Cache ID 6KcDf9s60]