Whole mitochondrial genome sequencing and transcriptional analysis to uncover an RT102-Type cytoplasmic male sterility-associated candidate gene derived from oryza rufipogon

Plant and Cell Physiology

Volumn 54, Issue 9, 2013, Pages 1560-1568

  Okazaki, Masayuki ^a   Kazama, Tomohiko ^a   Murata, Hayato ^a   Motomura, Keiji ^b   Toriyama, Kinya ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b UNIVERSITY OF THE RYUKYUS   (Japan)

Author keywords

CMS associated gene; Cytoplasmic male sterility (CMS); Mitochondria; Orf352; Oryza rufipogon

Indexed keywords

MITOCHONDRIAL DNA; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CMS-ASSOCIATED GENE; CYTOPLASM; CYTOPLASMIC MALE STERILITY (CMS); DNA SEQUENCE; GENETIC TRANSCRIPTION; GENETICS; INBREEDING; MITOCHONDRIAL GENE; MITOCHONDRIAL GENOME; MITOCHONDRION; MOLECULAR GENETICS; NORTHERN BLOTTING; ORF352; ORYZA RUFIPOGON; PLANT GENE; PLANT INFERTILITY; POLLEN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RICE; SEQUENCE HOMOLOGY;

CMS-ASSOCIATED GENE; CYTOPLASMIC MALE STERILITY (CMS); MITOCHONDRIA; ORF352; ORYZA RUFIPOGON;

AMINO ACID SEQUENCE; BLOTTING, NORTHERN; CYTOPLASM; DNA, MITOCHONDRIAL; GENES, MITOCHONDRIAL; GENES, PLANT; GENOME, MITOCHONDRIAL; INBREEDING; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PLANT INFERTILITY; PLANT PROTEINS; POLLEN; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION, GENETIC;

EID: 84887945254     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pct102     Document Type: Article

References (29)

1. Akagi, H., Nakamura, A., Yokozeki-Misono, Y., Inagaki, A., Takahashi, H., Mori, K. et al. (2004) Positional cloning of the rice Rf-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein. Theor. Appl. Genet. 108: 1449-1457.
2. Akagi, H., Sakamoto, M., Shinjyo, C., Shimada, H. and Fujimura, T. (1994) A unique sequence located downstream from the rice mito-chondrial atp6 may cause male sterility. Curr. Genet. 25: 52-58.
3. Bentolila, S. and Stefanov, S. (2012) A reevaluation of rice mito-chondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes. Plant Physiol. 158: 996-1017.
4. Forner, J., Weber, B., Thuss, S., Wildum, S. and Binder, S. (2007) Mapping of mitochondrial mRNA termini in Arabidopsis thaliana: t-elements contribute to 50 and 30 end formation. Nucleic Acids Res. 35: 3676-3692.
5. Fujii, S., Kazama, T., Yamada, M. and Toriyama, K. (2010) Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes. BMC Genomics 11: 209.
6. Fujii, S. and Toriyama, K. (2005) Molecular mapping of the fertility restorer gene for ms-CW-type cytoplasmic male sterility of rice. Theor. Appl. Genet. 111: 696-701.
7. Fujii, S. and Toriyama, K. (2008) Genome barriers between nuclei and mitochondria exemplified by cytoplasmic male sterility. Plant Cell Physiol. 49: 1484-1494.
8. Hanson, M.R. and Bentolila, S. (2004) Interactions of mitochondrial and nuclear genes that affect male gametophyte development. Plant Cell 16(Suppl.), S154-S169.
9. 0 ATP synthase. FEBS Lett. 540: 201-205.
10. Hu, J., Wang, K., Huang, W., Liu, G., Gao, Y., Wang, J. et al. (2012) The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162. Plant Cell 24: 109-122.
11. Igarashi, K., Kazama, T., Motomura, K. and Toriyama, K. (2013) Whole genomic sequencing of RT98 mitochondria derived from Oryza rufipogon and Northern blot analysis to uncover a cytoplasmic male sterility-associated gene. Plant Cell Physiol. 54: 237-243.
12. Iwabuchi, M., Kyozuka, J. and Shimamoto, K. (1993) Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice. EMBO J. 12: 1437-1446.
13. Kazama, T., Nakamura, T., Watanabe, M., Sugita, M. and Toriyama, K. (2008) Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Plant J. 55: 619-628.
14. Kazama, T. and Toriyama, K. (2003) A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice. FEBS Lett. 544: 99-102.
15. Komori, T., Ohta, S., Murai, N., Takakura, Y., Kuraya, Y., Suzuki, S. et al. (2004) Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.). Plant J. 37: 315-325.
16. Krogh, A.L.B., von Heijne, G. and Sonnhammer, E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305: 567-580.
17. Kubo, T. and Newton, K.J. (2008) Angiosperm mitochondrial genomes and mutations. Mitochondrion 8: 5-14.
18. Li, S., Yang, D. and Zhu, Y. (2007) Characterization and use of male sterility in hybrid rice breeding. J. Integr. Plant Biol. 49: 791-804.
19. Lohse, M., Drechse, O. and Bock, R. (2007) Organellar Genome DRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr. Genet. 52: 267-274.
20. Luo, D., Xu, H., Liu, Z., Guo, J., Li, H., Chen, L. et al. (2013) A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice. Nat. Genet. 45: 573-577.
21. Motomura, K., Moromizato, Z. and Adaniya, S. (2003) Inheritance of cytoplasmic male sterility and restoration of fertility in rice line, RT102C, derived from Oryza rufipogon. Jpn. J. Trop. Agric. 47: 70-76.
22. Notsu, Y., Masood, S., Nishikawa, T., Kubo, N., Akiduki, G., Nakazono, M. et al. (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet. Genomics 268: 434-445.
23. Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.A. et al. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
24. Schmitz-Linneweber, C. and Small, I. (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13: 663-670.
25. Schnable, P.S. and Wise, R.P. (1998) The molecular basis of cytoplas-mic male sterility and fertility restoration. Trends Plant Sci. 3: 175-180.
26. Wang, Z., Zou, Y., Li, X., Zhang, Q., Chen, L., Wu, H. et al. (2006) Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell 18: 676-687.
27. Yi, P., Wang, L., Sun, Q.P. and Zhu, Y.G. (2002) Discovery of mitochon-drial chimeric-gene associated with cytoplasmic male sterility of HL-rice. Chin. Sci. Bull. 47: 744-747.
28. Yokoi, S., Tsuchiya, T., Toriyama, K. and Hinata, K. (1997) Tapetum specific expression of the Osg6B promoter-b-glucuronidase gene in transgenic rice. Plant Cell Rep. 16: 363-367.
29. Zeltz, P., Kadowaki, K., Kubo, N., Maier, R.M., Hirai, A. and Kossel, H. (1996) A promiscuous chloroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited. Plant Mol. Biol. 31: 647-656.