Erratum: Isolation and characterization of dehydration-responsive element-binding factor 2C (MsDREB2C) from malus sieversii roem (Plant and Cell Physiology 54:9 (1415-1430) DOI:10.1093/pcp/pct087);Isolation and characterization of dehydration-responsive element-binding factor 2C (MsDREB2C) from Malus sieversii Roem

Plant and Cell Physiology

Volumn 54, Issue 9, 2013, Pages 1415-1430

  Zhao, Kai ^a   Shen, Xinjie ^a   Yuan, Huazhao ^a   Liu, Yun ^a   Liao, Xiong ^a   Wang, Qi ^a   Liu, Linlin ^a   Li, Fang ^a   Li, Tianhong ^a  

^a Key Laboratory of Beijing Municipality of Stress Physiology and Molecular Biology for Fruit Trees   (China)

Author keywords

Abiotic stresses; Biotic stresses; DREB; Functional analyses; Malus sieversii Roem; Promoter identification

Indexed keywords

ARABIDOPSIS; MALUS SIEVERSII; NICOTIANA OBTUSIFOLIA; PSEUDOMONAS SYRINGAE PV. TOMATO;

ABSCISIC ACID; PHYTOHORMONE; SODIUM CHLORIDE; VEGETABLE PROTEIN; WATER;

ABIOTIC STRESS; ADAPTATION; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; BIOTIC STRESS; COLD; DNA RESPONSIVE ELEMENT; DREB; DROUGHT; DRUG EFFECT; FUNCTIONAL ANALYSES; GENE DELETION; GENE EXPRESSION REGULATION; GENETICS; HEAT; HOST PATHOGEN INTERACTION; ISOLATION AND PURIFICATION; MALUS; MALUS SIEVERSII ROEM.; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT DISEASE; PROMOTER IDENTIFICATION; PROMOTER REGION; PSEUDOMONAS SYRINGAE; REGULATORY SEQUENCE; SEQUENCE HOMOLOGY; TRANSGENIC PLANT;

ABIOTIC STRESSES; BIOTIC STRESSES; DREB; FUNCTIONAL ANALYSES; MALUS SIEVERSII ROEM.; PROMOTER IDENTIFICATION;

ABSCISIC ACID; ADAPTATION, PHYSIOLOGICAL; AMINO ACID SEQUENCE; ARABIDOPSIS; BASE SEQUENCE; COLD TEMPERATURE; DROUGHTS; GENE DELETION; GENE EXPRESSION REGULATION, PLANT; HOST-PATHOGEN INTERACTIONS; HOT TEMPERATURE; MALUS; MOLECULAR SEQUENCE DATA; PLANT DISEASES; PLANT GROWTH REGULATORS; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS, GENETIC; PSEUDOMONAS SYRINGAE; REGULATORY SEQUENCES, NUCLEIC ACID; RESPONSE ELEMENTS; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; WATER;

EID: 84887894423     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pct143     Document Type: Erratum

References (75)

1. Abe, H., Urao, T., Ito, T., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15: 63-78.
2. Agarwal, P., Agarwal, P.K., Nair, S., Sopory, S.K. and Reddy, M.K. (2007) Stress inducible DREB2A transcription factor from Pennisetum glaucum is a phosphoprotein and its phosphorylation negatively regulates its DNA binding activity. Mol. Gen. Genet. 277: 189-198.
3. Agarwal, P.K., Agarwal, P., Reddy, M.K. and Sopory, S.K. (2006) Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep. 25: 1263-1274.
4. 0-region of Arabidopsis thaliana cor15a has cis-acting elements that confer cold-, drought- and ABA-regulated gene expression. Plant Mol. Biol. 24: 701-713.
5. Benkova, E., Ivanchenko, M.G., Friml, J., Shishkova, S. and Dubrovsky, J.G. (2009) A morphogenetic trigger: is there an emerging concept in plant developmental biology? Trends Plant Sci. 14 189-193.
6. Bhatnagar-Mathur, P., Devi, M.J., Reddy, D.S., Lavanya, M., Vadez, V., Serraj, R. et al. (2007) Stress-inducible expression of AtDREB1A in transgenic peanut (Arachis hypogaea L.) increases transpiration efficiency under water-limiting conditions. Plant Cell Rep. 26: 2071-2082.
7. Bindschedler, L.V., Dewdney, J., Blee, K.A., Stone, J.M., Asai, T., Plotnikov, J. et al. (2006) Peroxidase dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance. Plant J. 47: 851-863.
8. Bohnert, H.J., Ayoubi, P., Borchert, C., Bressan, R.A., Burnap, R.L., Cushman, J.C. et al. (2001) A genomic approach towards salt stress tolerance. Plant Physiol. Biochem. 39: 295-311.
9. Bradford, M.M. (1976) A rapid sensitive method for the quantitation of micrgram quantities of protein utilizing the principle of proteindye binding. Anal. Biochem. 72: 248-254.
10. Casimiro, I., Marchant, A., Bhalerao, R.P., Beeckman, T., Dhooge, S., Swarup, R. et al. (2001) Auxin transport promotes Arabidopsis lateral root initiation. Plant Cell 13: 843-852.
11. Champ, K.I., Febres, V.J. and Moore, G.A. (2006) The role of CBF tran-scriptional activators in two Citrus species (Poncirus and Citrus) with contrasting levels of freezing tolerance. Physiol. Plant. 129: 529-541.
12. Chandrasekharan, M.B., Bishop, K.J. and Hall, T.C. (2003) Module-specific regulation of the beta-phaseolin promoter during embryogenesis. Plant J. 33: 853-866.
13. Chang, S., Puryear, J. and Cairney, J. (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11: 113-116.
14. Chen, H., Je, J.Y., Song, C., Hwang, J.E. and Lim, C.O. (2012) A proximal promoter region of Arabidopsis DREB2C confers tissue-specific expression under heat stress. J. Integr. Plant Biol. 54: 640-651.
15. Chen, J.H., Xia, X.L. and Yin, W.L. (2009) Expression profiling and functional characterization of a DREB2-type gene from Populus euphratica. Biochem. Biophys. Res. Commun. 378: 483-487.
16. Chini, A., Grant, J.J., Seki, M., Shinozaki, K. and Loake, G.J. (2004) Drought tolerance established by enhanced expression of the CC-NBSLRR gene, ADR1, requires salicylic acid, EDS1 and ABI1. Plant J. 38: 810-822.
17. Chinnusamy, V., Ohta, M., Kanrar, S., Lee, B.H., Hong, X.H., Agarwal, M. et al. (2003) ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev. 17: 1043-1054.
18. Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
19. Dubouzet, J.G., Sakuma, Y., Ito, Y., Kasuga, M., Dubouzet, E.G., Miura, S. et al. (2003) OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt-, and cold-responsive gene expression. Plant J. 33: 751-763.
20. Dubrovsky, J.G., Sauer, M., Napsucialy-Mendivil, S., Ivanchenko, M.G., Friml, J., Shishkova, S. et al. (2008) Auxin acts as a local morpho-genetic trigger to specify lateral root founder cells. Proc. Natl Acad. Sci. USA 105: 8790-8794.
21. Dure, L., Crouch, M., Harada, J., David, T.H., Mundy, J., Quatrano, R. et al. (1989) Common amino acid sequence domains among the LEA proteins of higher plants. Plant Mol. Biol. 12: 475-486.
22. Fowler, S. and Thomashow, M.F. (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 14: 1675-1690.
23. Gilmour, S.J., Sebolt, A.M., Salazar, M.P., Everard, J.D., Thomashow, M.F. et al. (2000) Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol. 124: 1854-1865.
24. Gutha, LR. and Reddy, A.R. (2008) Rice DREB1B promoter shows distinct stress-specific responses, and the over expression of cDNA in tobacco confers improved abiotic and biotic stress tolerance. Plant Mol. Biol. 68: 533-555.
25. Higo, K., Ugawa, Y., Iwamoto, M. and Korenaga, T. (1999) Plant cis-acting regulatory DNA elements (PLACE) database. Nucleic Acids Res. 27: 297-300.
26. Horsch, R.B., Fry, J.E., Hoffmann, N.L, Eichholtz, D., Rogers, S.G. and Fraley, R.T. (1985) A simple and general method for transferring genes into plants. Science 227: 1229-1231.
27. Hu, H., Dai, M., Yao, J., Xiao, B., Li, X.H., Zhang, Q.F. et al. (2006) Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc. Natl Acad. Sci. USA 103: 12987-12992.
28. 1- pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L Plant Mol. Biol. 33: 857-865.
29. Ito, Y., Katsura, K., Maruyama, K., Taji, T., Kobayashi, M., Seki, M. et al. (2006) Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. Plant Cell Physiol. 47: 141-153.
30. Jefferson, RA, Kavanagh, T.A and Bevan, M.W. (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901-3907.
31. Kang, J.Y., Choi, H.I., Im, M.Y. and Kim, S.Y. (2002) Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. Plant Cell 14: 343-357.
32. Kerk, N.M., Ceserani, T., Tausta, S.L, Sussex, I.M. and Nelson, T.M. (2003) Laser capture microdissection of cells from plant tissues. Plant Physiol. 132: 27-35.
33. Kim, J.K., Mizoi, J., Yoshida, T., Fujita, Y., Nakajima, J. and Ohori, T. (2011) An ABRE promoter sequence is involved in osmotic stress-responsive expression of the DREB2A gene, which encodes a transcription factor regulating drought-inducible genes in Arabidopsis. Plant Cell Physiol. 52: 2136-2146.
34. Kim, J.K., Mizoi, J., Kidokoro, S., Maruyama, K., Nakajima, J. and Nakashima, K. (2012) Arabidopsis GROWTH-REGULATING FACTOR7 functions as a transcriptional repressor of abscisic acid-and osmotic stress-responsive genes, including DREB2A. Plant Cell 24: 3393-3405.
35. Kim, K.C., Lai, Z.B., Fan, B.F. and Chen, Z.X. (2008) Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Plant Cell 20: 2357-2371.
36. Kumar, S., Nei, M., Dudley, J. and Tamura, K. (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinformatics 9: 299-306.
37. Lata, C and Prasad, M. (2011) Role of DREBs in regulation of abiotic stress responses in plants. J. Exp. Bot 60: 121-135.
38. Lee, B.H., Byeongha, Lee, Henderson, D.A. and Zhu, J.K. (2005) The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell 17: 3155-3175.
39. Lee, S.J., Kang, J.Y., Park, H.J., Kim, M.D., Bae, M.S., Choi, H.I. et al. (2010) DREB2C interacts with ABF2, a bZIP protein regulating abscisic acid-responsive gene expression, and its overexpression affects abscisic acid sensitivity. Plant Physiol. 153: 716-727.
40. Lescot, M., Dehais, P., Thijs, G., Marchal, K., Moreau, Y. and Van de Peer, Y. (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 30: 325-327.
41. Li, W.X., Oono, Y., Zhu, J.H., He, X.J., Wu, J.M., Lida, K. et al. (2008) The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20: 2238-2251.
42. Li, Y.N. (2001) Researches of Germplasm Resources of Malus Mill pp. 20-23. China Agriculture Press, Beijing; (in Chinese with an English abstract).
43. Lim, C.J., Hwang, J.E., Chen, H., Hong, J.K., Yang, K.A., Choi, M.S. et al. (2007) Over-expression of the Arabidopsis DRE/CRT-binding transcription factor DREB2C enhances thermotolerance. Biochem. Biophys. Res. Commun. 362: 431-436.
44. Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K. et al. (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 10: 1391-1406.
45. -AACt method. Methods 25: 402-408.
46. Maleck, K., Levine, A., Eulgem, T., Morgan, A., Schmid, J., Kay, A. et al. (2001) The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nature 26: 403-410.
47. Maruchler-Bauer, A, Lu, S., Anderson, J.B., Chitsaz, F., Derbyshire, M.K. and De Weese-Scott, C (2011) CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res. 39: D225-D229.
48. Maruyama, K., Sakuma, Y., Kasuga, M., Ito, Y., Seki, M., Goda, H. et al. (2004) Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two micro-array systems. Plant J. 38: 982-993.
49. Matsukura, S., Mizoi, J., Yoshida, T., Todaka, D., Ito, Y., Maruyama, K. et al. (2010) Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes. Mol. Gen. Genet. 283: 185-196.
50. Mydlarz, LD. and Harvell, CD. (2007) Peroxidase activity and induci-bility in the sea fan coral exposed to a fungal pathogen. Comp. Biochem. Physiol. A 146: 54-62.
51. Nakashima, K., Satoh, R, Kiyosue, T., Yamaguchi-Shinozaki, K. and Shinozaki, K. (1998) A gene encoding proline dehydrogenase is not only induced by proline and hypo-osmolarity but is also devel-opmentally regulated in reproductive organs in Arabidopsis thaliana. Plant Physiol. 118: 1233-1241.
52. Park, H.C., Kim, M.L, Kang, Y.H., Jeon, J.M., Yoo, J.H., Kim, MC. et al. (2004) Pathogen- and NaCl induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor. Plant Physiol. 135: 2150-2161.
53. Qin, F., Kakimoto, M., Sakuma, Y., Maruyama, K., Osakabe, Y., Tran, LS. et al. (2007) Regulation and functional analysis of ZmDREB2A in response to drought and heat stresses in Zea mays L Plant J. 50: 54-69.
54. Reichmann, J.L., Heard, J., Martin, G., Reuber, L., Jiang, C.Z., Keddie, J. et al. (2000) Arabidopsis transcription factor: genome wide comparative analysis among eukaryotes. Science 290: 2105-2110.
55. Ruiz-Medrano, R., Xoconostle-Cázares, B., Ham, B.K., Li, G. and Lucas, W.J. (2011) Vascular expression in Arabidopsis in predicted by the frequency of CT/GA-rich repeats in gene promoter. Plant J. 67: 130-144.
56. Sakuma, Y., Liu, Q., Dubouzet, J.G., Abe, H., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2002) DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs transcription factors involved in dehydration- and cold-inducible gene expression. Biochem. Biophys. Res. Commun. 290: 998-1009.
57. Sakuma, Y., Maruyama, K., Osakabe, Y., Qin, F., Seki, M., Shinozaki, K. et al. (2006a) Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18: 1292-1309.
58. Sakuma, Y., Maruyama, K., Qin, F., Osakabe, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2006b) Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression. Proc. Natl Acad. Sci. USA 103: 18822-18827.
59. Shinozaki, K., Yamaguchi-Shinozaki, K. and Seki, M. (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr. Opin. Plant Biol. 6: 410-417.
60. Shukla, R.K., Raha, S., Tripathi, V. and Chattopadhyay, D. (2006) Expression of CAP2, an APETALA2-family transcription factor from Chickpea, enhances growth and tolerance to dehydration and salt stress in transgenic tobacco. Plant Physiol. 142: 113-123.
61. Stockinger, E.J., Gilmour, S.J. and Thomashow, M.F. (1997) Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc. Natl Acad. Sci. USA 94: 1035-1040.
62. Troll, W. and Lindsley, J. (1955) A photometric method for the determination of proline. J. Biol. Chem. 215: 655-660.
63. Tsutsui, T., Kato, W., Asada, Y., Sako, K., Sato, T. and Sonoda, Y. (2009) DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis. J. Plant Res. 122: 633-643.
64. Tunnacliffe, A. and Wise, M.J. (2007) The continuing conundrum of the LEA proteins. Naturwissenschaften 94: 791-812.
65. Wilmoth, J.C., Wang, S., Tiwari, S.B., Joshi, A.D., Hagen, G., Guilfoyle, T.J. et al. (2005) NPH4/ARF7 and ARF19 promote leaf expansion and auxin induced lateral root formation. Plant J. 43: 118-130.
66. Xiong, L., Schumaker, K.S. and Zhu, J.K. (2002) Cell signaling during cold, drought, and salt stress. Plant Cell 14: S165-S183.
67. Yamaguchi-Shinozaki, K. and Shinozaki, K. (1994) A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell 6: 251-264.
68. Yamaguchi-Shinozaki, K. and Shinozaki, K. (2005) Organization of cis-acting regulatory elements in osmotic- and cold-stress responsive promoters. Trends Plant Sci. 10: 88-94.
69. Yamazaki, D., Yoshida, S., Asami, T. and Kuchitsu, K. (2003) Visualization of abscisic acid-perception sites on the plasma membrane of stomatal guard cells. Plant J. 35: 129-139.
70. Yanagisawa, S. and Schmidt, R.J. (1999) Diversity and similarity among recognition sequences of Dof transcription factors. Plant J. 17: 209-214.
71. Yang, W., Liu, X.D., Chi, X.J., Wu, C.A., Li, Y.Z., Song, L.L. et al. (2011) Dwarf apple MbDREB1 enhances plant tolerance to low temperature, drought, and salt stress via both ABA-dependent and ABA-independent pathways. Planta 233: 219-229.
72. Yu, D., Chen, C. and Chen, Z.X. (2001) Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell 13: 1527-1539.
73. Zhao, T., Liang, D., Wang, P., Liu, J.Y. and Ma, F.W. (2012) Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress. Mol. Genet. Genomics 287: 423-436.
74. Zhao, X.J., Lei, H.J., Zhao, K., Yuan, H.Z. and Li, T.H. (2012) Isolation and characterization of a dehydration responsive element binding factor MsDREBA5 in Malus sieversii Roem. Sci. Hortic. 142: 212-220.
75. Zhou, M., Ma, J., Pang, J., Zhang, Z., Tang, Y. and Wu, Y. (2010) Regulation of plant stress response by dehydration responsive element binding (DREB) transcription factors. Afr. J. Biotechnol. 9: 9255-9279.