The plastidic DEAD-box RNA helicase 22, HS3, is essential for plastid functions both in seed development and in seedling growth

Plant and Cell Physiology

Volumn 54, Issue 9, 2013, Pages 1431-1440

  Kanai, Masatake ^a   Hayashi, Makoto ^a,b,c   Kondo, Maki ^a   Nishimura, Mikio ^a,b  

^a NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^b GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

^c NAGAHAMA INSTITUTE OF BIO SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

Arabidopsis; DEAD box RNA helicase; Plastid; Seed development; Seed storage oil; Seedling growth

Indexed keywords

ARABIDOPSIS PROTEIN; CHLOROPLAST PROTEIN; DEAD BOX PROTEIN; DEAD BOX RNA HELICASE 22 PROTEIN, ARABIDOPSIS; DEAD-BOX RNA HELICASE 22 PROTEIN, ARABIDOPSIS; MESSENGER RNA; PLANT RNA; TRIACYLGLYCEROL; VEGETABLE OIL;

ARABIDOPSIS; ARTICLE; DEAD-BOX RNA HELICASE; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MUTATION; PLANT GROWTH; PLANT LEAF; PLANT SEED; PLASTID; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEED DEVELOPMENT; SEED STORAGE OIL; SEEDLING; TRANSGENIC PLANT;

ARABIDOPSIS; DEAD-BOX RNA HELICASE; PLASTID; SEED DEVELOPMENT; SEED STORAGE OIL; SEEDLING GROWTH;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHLOROPLAST PROTEINS; DEAD-BOX RNA HELICASES; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; MUTATION; PLANT LEAVES; PLANT OILS; PLANTS, GENETICALLY MODIFIED; PLASTIDS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; RNA, PLANT; SEEDLING; SEEDS; TRIGLYCERIDES;

EID: 84887864087     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pct091     Document Type: Article

References (45)

1. Ajjawi, I., Lu, Y., Savage, L.J., Bell, S.M. and Last, R.L. (2010) Large-scale reverse genetics in Arabidopsis: case studies from the chloroplast 2010 project. Plant Physiol. 152: 529-540.
2. Arciga-Reyes, L., Wootton, L., Kieffer, M. and Davies, B. (2006) UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 47: 480-489.
3. Aubourg, S., Kreis, M. and Lecharny, A. (1999) The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res. 27: 628-636.
4. Cahoon, E.B., Shockey, J.M., Dietrich, C.R., Gidda, S.K., Mullen, R.T. and Dyer, J.M. (2007) Engineering oilseeds for sustainable production of industrial and nutritional feedstocks: solving bottlenecks in fatty acid flux. Curr. Opin. Plant Biol. 10: 236-244.
5. Chi, W., He, B., Mao, J., Li, Q., Ma, J., Ji, D. et al. (2012) The function of RH22, a DEAD RNA helicase, in the biogenesis of the 50S ribosomal subunits of Arabidopsis chloroplasts. Plant Physiol. 158: 693-707.
6. Cordin, O., Banroques, J., Tanner, N.K. and Linder, P. (2006) The DEAD-box protein family of RNA helicases. Gene 367: 17-37.
7. Courtois, F., Merendino, L., Demarsy, E., Mache, R. and Lerbs-Mache, S. (2007) Phage-type RNA polymerase RPOTmp transcribes the rrn operon from the PC promoter at early developmental stages in Arabidopsis. Plant Physiol. 145: 712-721.
8. de la Cruz, J., Kressler, D. and Linder, P. (1999) Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem. Sci. 24: 192-198.
9. Focks, N. and Benning, C. (1998) wrinkled1: a novel, low-seed-oil mutant of Arabidopsis with a deficiency in the seed-specific regulation of carbohydrate metabolism. Plant Physiol. 118: 91-101.
10. Gagliardi, D., Kuhn, J., Spadinger, U., Brennicke, A., Leaver, C.J. and Binder, S. (1999) An RNA helicase (AtSUV3) is present in Arabidopsis thaliana mitochondria. FEBS Lett. 458: 337-342.
11. Galili, G., Sengupta-Gopalan, C. and Ceriotti, A. (1998) The endoplas-mic reticulum of plant cells and its role in protein maturation and biogenesis of oil bodies. Plant Mol. Biol. 38: 1-29.
12. Gong, Z.Z., Dong, C.H., Lee, H., Zhu, J.H., Xiong, L.M., Gong, D.M. et al. (2005) A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell 17: 256-267.
13. Goto, S., Mano, S., Nakamori, C. and Nishimura, M. (2011) Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes. Plant Cell 23: 1573-1587.
14. Graham, I.A. (2008) Seed storage oil mobilization. Annu. Rev. Plant Biol. 59: 115-142.
15. Hayashi, M. and Nishimura, M. (2006) Arabidopsis thaliana - a model organism to study plant peroxisomes. Biochim. Biophys. Acta 1763: 1382-1391.
16. Hayashi, M., Toriyama, K., Kondo, M. and Nishimura, M. (1998) 2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid beta-oxidation. Plant Cell 10: 183-195.
17. Horiguchi, G., Molla-Morales, A., Perez-Perez, J.M., Kojima, K., Robles, P., Ponce, M.R. et al. (2011) Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development. Plant J. 65: 724-736.
18. Hricová, A., Quesada, V. and Micol, J.L. (2006) The SCABRA3 nuclear gene encodes the plastid RpoTp RNA polymerase, which is required for chloroplast biogenesis and mesophyll cell proliferation in Arabidopsis. Plant Physiol. 141: 942-956.
19. Kanai, M., Nishimura, M. and Hayashi, M. (2010) A peroxisomal ABC transporter promotes seed germination by inducing pectin degradation under the control of ABI5. Plant J. 62: 936-947.
20. Kant, P., Kant, S., Gordon, M., Shaked, R. and Barak, S. (2007) STRESS RESPONSE SUPPRESSOR1 and STRESS RESPONSE SUPPRESSOR2, two DEAD-box RNA helicases that attenuate arabidopsis responses to multiple abiotic stresses. Plant Physiol. 145: 814-830.
21. Ke, J.S., Wen, T.N., Nikolau, B.J. and Wurtele, E.S. (2000) Coordinate regulation of the nuclear and plastidic genes coding for the subunits of the heteromeric acetyl-coenzyme a carboxylase. Plant Physiol. 122: 1057-1071.
22. Kleffmann, T., Russenberger, D., von Zychlinski, A., Christopher, W., Sjolander, K., Gruissem, W. et al. (2004) The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr. Biol. 14: 354-362.
23. Kohler, D., Schmidt-Gattung, S. and Binder, S. (2010) The DEAD-box protein PMH2 is required for efficient group II intron splicing in mitochondria of Arabidopsis thaliana. Plant Mol. Biol. 72: 459-467.
24. Konishi, T., Shinohara, K., Yamada, K. and Sasaki, Y. (1996) Acetyl-CoA carboxylase in higher plants: most plants other than gramineae have both the prokaryotic and the eukaryotic forms of this enzyme. Plant Cell Physiol. 37: 117-122.
25. Liu, Y.G., Mitsukawa, N., Oosumi, T. and Whittier, R.F. (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8: 457-463.
26. Madoka, Y., Tomizawa, K.I., Mizoi, J., Nishida, I., Nagano, Y. and Sasaki, Y. (2002) Chloroplast transformation with modified accD operon increases acetyl-CoA carboxylase and causes extension of leaf longevity and increase in seed yield in tobacco. Plant Cell Physiol. 43: 1518-1525.
27. Matthes, A., Schmidt-Gattung, S., Kohler, D., Forner, J., Wildum, S., Raabe, M. et al. (2007) Two DEAD-box proteins may be part of RNA-dependent high-molecular-mass protein complexes in Arabidopsis mitochondria. Plant Physiol. 145: 1637-1646.
28. Mingam, A., Toffano-Nioche, C., Brunaud, V., Boudet, N., Kreis, M. and Lecharny, A. (2004) DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes. Plant Biotechnol. J. 2: 401-415.
29. Muntz, K. (2007) Protein dynamics and proteolysis in plant vacuoles. J. Exp. Bot. 58: 2391-2407.
30. Myouga, F., Akiyama, K., Motohashi, R., Kuromori, T., Ito, T., Iizumi, H. et al. (2010) The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis. Plant J. 61: 529-542.
31. Nakagawa, T., Suzuki, T., Murata, S., Nakamura, S., Hino, T., Maeo, K. et al. (2007) Improved gateway binary vectors: high-performance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci. Biotechnol. Biochem. 71: 2095-2100.
32. Neuhaus, H.E. and Emes, M.J. (2000) Nonphotosynthetic metabolism in plastids. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51: 111-140.
33. Nishimura, K., Ashida, H., Ogawa, T. and Yokota, A. (2010) A DEAD box protein is required for formation of a hidden break in Arabidopsis chloroplast 23S rRNA. Plant J. 63: 766-777.
34. Pinon, V., Etchells, J.P., Rossignol, P., Collier, S.A., Arroyo, J.M., Martienssen, R.A. et al. (2008) Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Development 135: 1315-1324.
35. Porra, R.J., Thompson, W.A. and Kriedemann, P.E. (1989) Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochem. Biophys. Acta 975: 384-394.
36. Rowan, B.A., Oldenburg, D.J. and Bendich, A.J. (2007) A high-throughput method for detection of DNA in chloroplasts using flow cytometry. Plant Methods 3: 5.
37. Sasaki, Y. and Nagano, Y. (2004) Plant acetyl-CoA carboxylase: structure, biosynthesis, regulation, and gene manipulation for plant breeding. Biosci. Biotechnol. Biochem. 68: 1175-1184.
38. Shen, B., Sinkevicius, K.W., Selinger, D.A. and Tarczynski, M.C. (2006) The homeobox gene GLABRA2 affects seed oil content in Arabidopsis. Plant Mol. Biol. 60: 377-387.
39. Shimizu, K.K., Ito, T., Ishiguro, S. and Okada, K. (2008) MAA3 (MAGAT AMA3) helicase gene is required for female gametophyte development and pollen tube guidance in Arabidopsis thaliana. Plant Cell Physiol. 9: 1478-1483.
40. Smith, A.M., Zeeman, S.C. and Smith, S.M. (2005) Starch degradation. Annu. Rev. Plant Biol. 56: 73-98.
41. Stonebloom, S., Burch-Smith, T., Kim, I., Meinke, D., Mindrinos, M. and Zambryski, P. (2009) Loss of the plant DEAD-box protein ISE1 leads to defective mitochondria and increased cell-to-cell transport via plasmodesmata. Proc. Natl Acad. Sci. USA 106: 17229-17234.
42. Umate, P., Tuteja, R. and Tuteja, N. (2010) Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human. Plant Mol. Biol. 73: 449-465.
43. Yoine, M., Nishii, T. and Nakamura, K. (2006a) Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth. Plant Cell Physiol. 47: 572-580.
44. Yoine, M., Ohto, M., Onai, K., Mita, S. and Nakamura, K. (2006b) The lba1 mutation of UPF1 RNA helicase involved in nonsensemediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis. Plant J. 47: 49-62.
45. Yu, Q.B., Jiang, Y., Chong, K. and Yang, Z.N. (2009) AtECB2, a penta-tricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana. Plant J. 59: 1011-1023.