메뉴 건너뛰기




Volumn 130, Issue , 2014, Pages 109-114

Combinations of fragment descriptors for improved prediction of CYP2C19 inhibitors

Author keywords

Classification; CYP2C19; Fragment; Inhibitor; Support vector machine

Indexed keywords

CYTOCHROME P450 2C19 INHIBITOR; CYTOCHROME P450 INHIBITOR; UNCLASSIFIED DRUG;

EID: 84887774322     PISSN: 01697439     EISSN: 18733239     Source Type: Journal    
DOI: 10.1016/j.chemolab.2013.10.013     Document Type: Article
Times cited : (10)

References (30)
  • 1
    • 27644596457 scopus 로고    scopus 로고
    • Predicting in vivo drug interactions from in vitro drug discovery data
    • Wienkers L.C., Heath T.G. Predicting in vivo drug interactions from in vitro drug discovery data. Nat. Rev. Drug Discov. 2005, 4:825-833.
    • (2005) Nat. Rev. Drug Discov. , vol.4 , pp. 825-833
    • Wienkers, L.C.1    Heath, T.G.2
  • 2
    • 0035166337 scopus 로고    scopus 로고
    • In human therapy, is the drug-drug interaction or the adverse drug reaction the issue?
    • Souich P.Du. In human therapy, is the drug-drug interaction or the adverse drug reaction the issue?. Can. J. Clin. Pharmacol. 2001, 8:153.
    • (2001) Can. J. Clin. Pharmacol. , vol.8 , pp. 153
    • Souich, P.1
  • 3
    • 84859964620 scopus 로고    scopus 로고
    • The need for translational research on drug-drug interactions
    • Hennessy S., Flockhart D. The need for translational research on drug-drug interactions. Clin. Pharmacol. Ther. 2012, 91:771-773.
    • (2012) Clin. Pharmacol. Ther. , vol.91 , pp. 771-773
    • Hennessy, S.1    Flockhart, D.2
  • 4
    • 84858300305 scopus 로고    scopus 로고
    • Discovery and explanation of drug-drug interactions via text mining
    • Percha B., Garten Y., Altman R. Discovery and explanation of drug-drug interactions via text mining. Pac. Symp. Biocomput. 2012, 410-421.
    • (2012) Pac. Symp. Biocomput. , pp. 410-421
    • Percha, B.1    Garten, Y.2    Altman, R.3
  • 6
    • 84876431695 scopus 로고    scopus 로고
    • Pharmacointeraction network models predict unknown drug-drug interactions
    • Cami A., Manzi S., Arnold A., Reis B.Y. Pharmacointeraction network models predict unknown drug-drug interactions. PloS ONE 2013, 8:e61468.
    • (2013) PloS ONE , vol.8
    • Cami, A.1    Manzi, S.2    Arnold, A.3    Reis, B.Y.4
  • 7
    • 6944221357 scopus 로고    scopus 로고
    • Drug-drug interactions for UDP-glucuronosyltransferase substrates: a pharmacokinetic explanation for typically observed low exposure (AUCi/AUC) ratios
    • Williams J.A., Hyland R., Jones B.C., Smith D.A., Hurst S., Goosen T.C., Peterkin V., Koup J.R., Ball S.E. Drug-drug interactions for UDP-glucuronosyltransferase substrates: a pharmacokinetic explanation for typically observed low exposure (AUCi/AUC) ratios. Drug Metab. Dispos. 2004, 32:1201-1208.
    • (2004) Drug Metab. Dispos. , vol.32 , pp. 1201-1208
    • Williams, J.A.1    Hyland, R.2    Jones, B.C.3    Smith, D.A.4    Hurst, S.5    Goosen, T.C.6    Peterkin, V.7    Koup, J.R.8    Ball, S.E.9
  • 10
    • 0031975185 scopus 로고    scopus 로고
    • Update: clinically significant cytochrome P-450 drug interactions
    • Michalets E.L. Update: clinically significant cytochrome P-450 drug interactions. Pharmacother. J. Human Pharmacol. Drug Ther. 1998, 18:84-112.
    • (1998) Pharmacother. J. Human Pharmacol. Drug Ther. , vol.18 , pp. 84-112
    • Michalets, E.L.1
  • 12
    • 33846923287 scopus 로고    scopus 로고
    • In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors
    • Jensen B.F., Vind C., Padkjær S.B., Brockhoff P.B., Refsgaard H.H. In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors. J. Med. Chem. 2007, 50:501-511.
    • (2007) J. Med. Chem. , vol.50 , pp. 501-511
    • Jensen, B.F.1    Vind, C.2    Padkjær, S.B.3    Brockhoff, P.B.4    Refsgaard, H.H.5
  • 13
    • 70350513549 scopus 로고    scopus 로고
    • Classification of cytochrome P450 inhibitors with respect to binding free energy and pIC50 using common molecular descriptors
    • Dagliyan O., Kavakli I.H., Turkay M. Classification of cytochrome P450 inhibitors with respect to binding free energy and pIC50 using common molecular descriptors. J. Chem. Inf. Model. 2009, 49:2403-2411.
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 2403-2411
    • Dagliyan, O.1    Kavakli, I.H.2    Turkay, M.3
  • 15
    • 79960245348 scopus 로고    scopus 로고
    • Classification of cytochrome P450 inhibitors and noninhibitors using combined classifiers
    • Cheng F.X., Yu Y., Shen J., Yang L., Li W.H., Liu G., Lee P.W., Tang Y. Classification of cytochrome P450 inhibitors and noninhibitors using combined classifiers. J. Chem. Inf. Model. 2011, 51:996-1011.
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 996-1011
    • Cheng, F.X.1    Yu, Y.2    Shen, J.3    Yang, L.4    Li, W.H.5    Liu, G.6    Lee, P.W.7    Tang, Y.8
  • 16
    • 33947688792 scopus 로고    scopus 로고
    • CYP2C19 genotype and omeprazole hydroxylation phenotype in Chinese Li population
    • Wang J.H., Li P.Q., Fu Q.Y., Li Q.X., Cai W.W. CYP2C19 genotype and omeprazole hydroxylation phenotype in Chinese Li population. Clin. Exp. Pharmacol. Physiol. 2007, 34:421-424.
    • (2007) Clin. Exp. Pharmacol. Physiol. , vol.34 , pp. 421-424
    • Wang, J.H.1    Li, P.Q.2    Fu, Q.Y.3    Li, Q.X.4    Cai, W.W.5
  • 17
    • 77952301353 scopus 로고    scopus 로고
    • Pharmacogenetic biomarkers as tools for improved drug therapy; emphasis on the cytochrome P450 system
    • Ingelman-Sundberg M., Sim S.C. Pharmacogenetic biomarkers as tools for improved drug therapy; emphasis on the cytochrome P450 system. Biochem. Biophys. Res. Commun. 2010, 396:90-94.
    • (2010) Biochem. Biophys. Res. Commun. , vol.396 , pp. 90-94
    • Ingelman-Sundberg, M.1    Sim, S.C.2
  • 18
    • 0031024171 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski C.A., Lombardo F., Dominy B.W., Feeney P.J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Deliv. Rev. 1997, 23:3-25.
    • (1997) Adv. Drug Deliv. Rev. , vol.23 , pp. 3-25
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 19
    • 84887741705 scopus 로고    scopus 로고
    • Tripos Inc., St. Louis, MO, USA, (Available online: accessed on 26 January 2011)
    • Sybyl 8.1 2008, Tripos Inc., St. Louis, MO, USA, (Available online: http://www.tripos.com accessed on 26 January 2011).
    • (2008)
    • Sybyl 8.11
  • 20
    • 2942705823 scopus 로고    scopus 로고
    • Hologram quantitative structure activity relationship studies on 5-HT6 antagonists
    • Doddareddy M.R., Lee Y.J., Cho Y.S., Choi K.I., Koh H.Y., Pae A.N. Hologram quantitative structure activity relationship studies on 5-HT6 antagonists. Bioorg. Med. Chem. 2004, 12:3815-3824.
    • (2004) Bioorg. Med. Chem. , vol.12 , pp. 3815-3824
    • Doddareddy, M.R.1    Lee, Y.J.2    Cho, Y.S.3    Choi, K.I.4    Koh, H.Y.5    Pae, A.N.6
  • 21
    • 0344988823 scopus 로고    scopus 로고
    • HQSAR: a new, highly predictive QSAR technique
    • Lowis D.R. HQSAR: a new, highly predictive QSAR technique. Tripos Tech. Notes 1997, 1:1-15.
    • (1997) Tripos Tech. Notes , vol.1 , pp. 1-15
    • Lowis, D.R.1
  • 23
    • 34548796003 scopus 로고    scopus 로고
    • 2D-QSAR and HQSAR of the inhibition of calcineurin-NFAT signaling by blocking protein-protein interaction with N-(4-oxo-1 (4H)-naphthalenylidene) benzenesulfonamide analogues
    • Myung P.-K., Sung N.-D. 2D-QSAR and HQSAR of the inhibition of calcineurin-NFAT signaling by blocking protein-protein interaction with N-(4-oxo-1 (4H)-naphthalenylidene) benzenesulfonamide analogues. Arch. Pharm. Res. 2007, 30:976-983.
    • (2007) Arch. Pharm. Res. , vol.30 , pp. 976-983
    • Myung, P.-K.1    Sung, N.-D.2
  • 25
    • 77958126601 scopus 로고    scopus 로고
    • Recent advances in fragment-based QSAR and multi-dimensional QSAR methods
    • Myint K.Z., Xie X.-Q. Recent advances in fragment-based QSAR and multi-dimensional QSAR methods. Int. J. Mol. Sci. 2010, 11:3846-3866.
    • (2010) Int. J. Mol. Sci. , vol.11 , pp. 3846-3866
    • Myint, K.Z.1    Xie, X.-Q.2
  • 27
    • 33845800485 scopus 로고    scopus 로고
    • Novel 2D fingerprints for ligand-based virtual screening
    • Ewing T., Baber J.C., Feher M. Novel 2D fingerprints for ligand-based virtual screening. J. Chem. Inf. Model. 2006, 46:2423-2431.
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 2423-2431
    • Ewing, T.1    Baber, J.C.2    Feher, M.3
  • 28
    • 0342645323 scopus 로고    scopus 로고
    • Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection
    • Brown R.D., Martin Y.C. Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection. J. Chem. Inf. Comput. Sci. 1996, 36:572-584.
    • (1996) J. Chem. Inf. Comput. Sci. , vol.36 , pp. 572-584
    • Brown, R.D.1    Martin, Y.C.2
  • 30
    • 0031998121 scopus 로고    scopus 로고
    • Machine learning for the detection of oil spills in satellite radar images
    • Kubat M., Holte R.C., Matwin S. Machine learning for the detection of oil spills in satellite radar images. Mach. Learn. 1998, 30:195-215.
    • (1998) Mach. Learn. , vol.30 , pp. 195-215
    • Kubat, M.1    Holte, R.C.2    Matwin, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.