The roles of extracellular DNA in the structural integrity of extracellular polymeric substance and bacterial biofilm development

Environmental Microbiology Reports

Volumn 5, Issue 6, 2013, Pages 778-786

  Das, Theerthankar ^a   Sehar, Shama ^a   Manefield, Mike ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL POLYSACCHARIDE; BACTERIAL PROTEIN; POLYMER;

BACTERIUM ADHERENCE; BIOFILM; GENETICS; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; QUORUM SENSING; SECRETION (PROCESS); SHORT SURVEY;

BACTERIAL ADHESION; BACTERIAL PROTEINS; BIOFILMS; DNA, BACTERIAL; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIA; MOLECULAR SEQUENCE DATA; POLYMERS; POLYSACCHARIDES, BACTERIAL; QUORUM SENSING;

EID: 84887734324     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/1758-2229.12085     Document Type: Short Survey

References (59)

1. Allesen-Holm, M., Barken, K.B., Yang, L., Klausen, M., Webb, J.S., Kjelleberg, S., etal. (2006) A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms. Mol Microbiol 59: 1114-1128.
2. Bakker, E.M., and Tiddens, H.A.W.M. (2007) Pharmacology, clinical efficacy and safety of recombinant human DNase in cystic fibrosis. Expert Rev Respir Med 1: 317-329.
3. Berne, C., Kysela, D.T., and Brun, Y.V. (2010) A bacterial extracellular DNA inhibits settling of motile progeny cells within a biofilm. Mol Microbiol 77: 815-829.
4. Böckelmann, U., Janke, A., Kuhn, R., Neu, T.R., Wecke, J., Lawrence, J.R., and Szewzyk, U. (2006) Bacterial extracellular DNA forming a defined network-like structure. FEMS Microbiol Lett 262: 31-38.
5. Cabiscol, E., Tamarit, J., and Ros, J. (2000) Oxidative stress in bacteria and protein damage by reactive oxygen species. Int Microbiol 3: 3-8.
6. Carrolo, M., Frias, M.J., Pinto, F.R., MeloCristino, J., and Ramirez, M. (2010) Prophage spontaneous activation promotes DNA release enhancing biofilm formation in Streptococcus pneumoniae. PLoS ONE 5: 1-10.
7. Clare, L.K., and Patrick, H.V. (2010) Cell dispersal in biofilms: an extracellular DNA masks nature's strongest glue. Mol Microbiol 77: 801-804.
8. Das, T., and Manefield, M. (2012) Pyocyanin promotes extracellular DNA release in Pseudomonas aeruginosa. PLoS ONE 7: e46718.
9. Das, T., and Manefield, M. (2013) Phenazine production enhances extracellular DNA release via hydrogen peroxide generation in Pseudomonas aeruginosa. Commun Integr Biol 6: e23570.
10. Das, T., Sharma, P.K., Busscher, H.J., Van der Mei, H.C., and Krom, B.P. (2010) Role of extracellular DNA in initial bacterial adhesion and surface aggregation. Appl Environ Microbiol 76: 3405-3408.
11. Das, T., Krom, B.P., van der Mei, H.C., Busscher, H.J., and Sharma, P.K. (2011a) DNA-mediated bacterial aggregation is dictated by acid-base interactions. Soft Matter 7: 2927-2935.
12. Das, T., Sharma, P.K., Krom, B.P., van der Mei, H.C., and Busscher, H.J. (2011b) Role of eDNA on the adhesion forces between Streptococcus mutans and substratum surfaces: influence of ionic strength and substratum hydrophobicity. Langmuir 27: 10113-10118.
13. Das, T., Kutty, S.K., Kumar, N., and Manefield, M. (2013) Pyocyanin factilitates extracellular DNA binding to Pseudomonas aeruginosa influencing cell surface properties and aggregation. PLoS ONE 8: e58299.
14. De Bentzmann, S., Giraud, C., Bernard, S.C., Calderon, V., Ewald, F., Plesiat, P., etal. (2012) Unique biofilm signature, drug susceptibility and decreased virulence in Drosophila through the Pseudomonas aeruginosa two-component system PprAB. PLoS Pathog 8: e1003052.
15. De Kievit, T.R. (2009) Quorum sensing in Pseudomonas aeruginosa biofilms. Environ Microbiol 11: 279-288.
16. Dominiak, D.M., Nielsen, J.L., and Nielsen, P.H. (2011) Extracellular DNA is abundant and important for microcolony strength in mixed microbial biofilms. Environ Microbiol 13: 710-721.
17. Finkel, S.E., and Kolter, R. (2001) DNA as nutrient: novel role for bacterial competence for gene homologs. J Bacteriol 183: 6288-6293.
18. Flemming, H.C., and Wingender, J. (2010) The biofilm matrix. Nat Rev Microbiol 8: 623-633.
19. Giese, B. (2000) Long-distance charge transport in DNA: the hopping mechanism. Acc Chem Res 33: 631-636.
20. Giese, B. (2002) Electron transfer in DNA. Curr Opin Chem Biol 6: 612-618.
21. Godeke, J., Paul, K., Lassak, J., and Thormann, K.M. (2011) Phage-induced lysis enhances biofilm formation in Shewanella oneidensis MR-1. ISME J 5: 613-626.
22. Goodman, S.D., Obergfell, K.P., Jurcisek, J.A., Novotny, L.A., Downey, J.S., Ayala, E.A., etal. (2011) Biofilms can be dispersed by focusing the immune system on a common family of bacterial nucleoid-associated proteins. Mucosal Immunol 4: 625-637.
23. Grande, R., Di Giulio, M., Bessa, L.J., Di Campli, E., Baffoni, M., Guarnieri, S., and Cellini, L. (2010) Extracellular DNA in Helicobacter pylori biofilm: a backstairs rumour. J Appl Microbiol 110: 490-498.
24. Hall-Stoodley, L., Costerton, J.W., and Stoodley, P. (2004) Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol 2: 95-108.
25. Hancock, R.E.W. (2001) A brief on bacterial biofilms. Nat Genet 29: 360.
26. Harmsen, M., Lappann, M., Knøchel, S., and Molin, S. (2010) Role of extracellular DNA during biofilm formation by Listeria monocytogenes. Appl Environ Microbiol 76: 2271-2279.
27. Huseby, M.J., Kruse, A.C., Digre, J., Kohler, P.L., Vocke, J.A., Mann, E.E., etal. (2010) Beta toxin catalyzes formation of nucleoprotein matrix in staphylococcal biofilms. Proc Natl Acad Sci U S A 107: 14407-14412.
28. Izano, E.A., Amarante, M.A., Kher, W.B., and Kaplan, J.B. (2008) Differential roles of poly-N-acetylglucosamine surface polysaccharide and extracellular DNA in Staphylococcus aureus and Staphylococcus epidermidis biofilms. Appl Environ Microbiol 74: 470-476.
29. Kaplan, J.B., Jabbouri, S., and Sadovskaya, I. (2011) Extracellular DNA dependent biofilm formation by Staphylococcus epidermidis RP62A in response to subminimal inhibitory concentration of antibiotics. Res Microbiol 162: 535-541.
30. Khardori, N., and Yassien, M. (1995) Biofilms in device-related infections. J Ind Microbiol 15: 141-147.
31. Lappann, M., Claus, H., Van Alen, T., Harmsen, M., Ellas, J., Molin, S., and Vogel, U. (2010) A dual role of extracellular DNA during biofilm formation of Neisseria meningitidis. Mol Microbiol 75: 1355-1371.
32. Liu, H., Yang, Y., Shen, X., Zhang, Z., Shen, P., and Xie, Z. (2008) Role of DNA in bacterial aggregation. Curr Microbiol 57: 139-144.
33. Mann, E.E., Rice, K.C., Boles, B.R., Endres, J.L., Ranjit, D., Chandramohan, L., etal. (2009) Modulation of eDNA release and degradation affects Staphylococcus aureus biofilm maturation. PLoS ONE 4: 1-12.
34. Marsh, P.D., Moter, A., and Devine, D. (2011) Dental plaque biofilms: communities, conflict and control. Periodontol 2000 55: 16-35.
35. Merino, E.J., Boal, A.K., and Barton, J.K. (2008) Biological contexts for DNA charge transport chemistry. Curr Opin Chem Biol 12: 229-237.
36. Miller, C.J., Rose, A.L., and Waite, T.D. (2013) Hydroxyl radical production by H(2)O(2)-mediated oxidation of Fe(II) complexed by Suwanee river fulvic acid under circumneutral freshwater conditions. Environ Sci Technol 47: 829-835.
37. Muren, N.B., Olmon, E.D., and Barton, J.K. (2012) Solution, surface, and single molecule platforms for the study of DNA-mediated charge transport. Phys Chem Chem Phys 14: 13754-13771.
38. Nielsen, K.M., Johnsen, P.J., Bensasson, D., and Daffonchio, D. (2007) Release and persistence of extracellular DNA in the environment. Environ Biosafety Res 6: 37-53.
39. O'Toole, G., Kaplan, H.B., and Kolter, R. (2000) Biofilm formation as microbial development. Annu Rev Microbiol 54: 49-79.
40. Palmgren, R., and Nielsen, P.H. (1996) Accumulation of DNA in the exopolymeric matrix of activated sludge and bacterial cultures. Water Sci Technol 34: 233-240.
41. Parsek, M.R., and Singh, P.K. (2003) Bacterial biofilms: an emerging link to disease pathogenesis. Annu Rev Microbiol 57: 677-701.
42. Petersen, F.C., Pecharki, D., and Scheie, A.A. (2004) Biofilm mode of growth of Streptococcus intermedius favored by a competence-stimulating signaling peptide. J Bacteriol 186: 6327-6331.
43. Petersen, F.C., Tao, L., and Scheie, A.A. (2005) DNA binding-uptake system: a link between cell-to-cell communication and biofilm formation. J Bacteriol 187: 4392-4400.
44. Price-Whelan, A., Dietrich, L.E.P., and Newman, D.K. (2006) Rethinking 'secondary' metabolism: physiological roles for phenazine antibiotics. Nat Chem Biol 2: 71-78.
45. Qin, Z., Ou, Y., Yang, L., Zhu, Y., Tolker-Nielsen, T., Molin, S., and Qu, D. (2007) Role of autolysin-mediated DNA release in biofilm formation of Staphylococcus epidermidis. Microbiology 153: 2083-2092.
46. Ramos, I., Dietrich, L.E.P., Price-Whelan, A., and Newman, D.K. (2010) Phenazines affect biofilm formation by Pseudomonas aeruginosa in similar ways at various scales. Res Microbiol 161: 187-191.
47. Slinker, J.D., Muren, N.B., Renfrew, S.E., and Barton, J.K. (2011) DNA charge transport over 34nm. Nat Chem 3: 230-235.
48. Steinberger, R.E., and Holden, P.A. (2005) Extracellular DNA in single- and multiple-species unsaturated biofilms. Appl Environ Microbiol 71: 5404-5410.
49. Swartjes, J.J.T.M., Das, T., Sharifi, S., Subbiahdoss, G., Sharma, P.K., Krom, B.P., etal. (2013) A functional DNase I coating to prevent adhesion of bacteria and the formation of biofilm. Adv Funct Mater 23: 2843-2849. DOI:10.1002/adfm.201202927
50. Tetz, G.V., Artemenko, N.K., and Tetz, V.V. (2009) Effect of DNase and antibiotics on biofilm characteristics. Antimicrob Agents Chemother 53: 1204-1209.
51. Thomas, V.C., Thurlow, L.R., Boyle, D., and Hancock, L.E. (2008) Regulation of autolysis-dependent extracellular DNA release by Enterococcus faecalis extracellular proteases influences biofilm development. J Bacteriol 190: 5690-5698.
52. Tsuneda, S., Aikawa, H., Hayashi, H., Yuasa, A., and Hirata, A. (2003) Extracellular polymeric substances responsible for bacterial adhesion onto solid surface. FEMS Microbiol Lett 223: 287-292.
53. Van Loosdrecht, M.C.M., Norde, W., Lyklema, J., and Zehnder, A.J.B. (1990) Hydrophobic and electrostatic parameters in bacterial adhesion. Aquat Sci 52: 103-114.
54. Vilain, S., Pretorius, J.M., Theron, J., and Brozel, V.S. (2009) DNA as an adhesin: Bacillus cereus requires extracellular DNA to form biofilms. Appl Environ Microbiol 75: 2861-2868.
55. Walker, J.T., and Marsh, P.D. (2004) A review of biofilms and their role in microbial contamination of dental unit water systems (DUWS). Int Biodeterior Biodegradation 54: 87-98.
56. Webb, J.S., Thompson, L.S., James, S., Charlton, T., Tolker Nielsen, T., Koch, B., etal. (2003) Cell death in Pseudomonas aeruginosa biofilm development. J Bacteriol 185: 4585-4592.
57. Whitchurch, C.B., Tolker-Nielsen, T., Ragas, P.C., and Mattick, J.S. (2002) Extracellular DNA required for bacterial biofilm formation. Science 295: 1487.
58. Yochay, R.G., Trzeinski, K., Thompson, C.M., Malley, R., and Lipsitch, M. (2006) Interference between Streptococcus pneumoniae and Staphylococcus aureus: in vitro hydrogen peroxide mediated killing by Streptococcus pneumoniae. J Bacteriol 188: 4996-5001.
59. Zheng, L., Chen, Z., Itzek, A., Ashby, M., and Kreth, J. (2011) Catabolite control protein A controls hydrogen peroxide production and cell death in Streptococccus sanguinis. J Bacteriol 193: 516-526.