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Volumn 21, Issue 12, 2013, Pages 1423-1428

Determination of population origin: A comparison of autosomal SNPs, Y-chromosomal and mtDNA haplogroups using a Malagasy population as example

Author keywords

Madagascar; mtDNA; population origin; SNP; Y chromosome

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84887622200     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2013.51     Document Type: Article
Times cited : (7)

References (33)
  • 1
    • 0027743235 scopus 로고
    • The culture history of Madagascar
    • Dewar R, Wright H: The culture history of Madagascar. J World Prehist 1993; 7: 417-466.
    • (1993) J World Prehist , vol.7 , pp. 417-466
    • Dewar, R.1    Wright, H.2
  • 2
    • 0000744424 scopus 로고
    • Pre-settlement vegetation changes at Lake Tritirvakely, Madagascar
    • Burney DA: Pre-settlement vegetation changes at Lake Tritirvakely, Madagascar. Palaeoecol Africa 1987; 18: 357-381.
    • (1987) Palaeoecol Africa , vol.18 , pp. 357-381
    • Burney, D.A.1
  • 3
    • 3242890880 scopus 로고    scopus 로고
    • A chronology for late prehistoric Madagascar
    • Burney DA, Burney LP, Godfrey LR et al: A chronology for late prehistoric Madagascar. J Hum Evol 2004; 47: 25-63.
    • (2004) J Hum Evol , vol.47 , pp. 25-63
    • Burney, D.A.1    Burney, L.P.2    Godfrey, L.R.3
  • 4
    • 17644407717 scopus 로고    scopus 로고
    • The dual origin of the Malagasy in Island Southeast Asia and East Africa: Evidence from maternal and paternal lineages
    • Hurles ME, Sykes BC, Jobling MA, Forster P: The dual origin of the Malagasy in Island Southeast Asia and East Africa: evidence from maternal and paternal lineages. Am J Hum Genet 2005; 76: 894-901.
    • (2005) Am J Hum Genet , vol.76 , pp. 894-901
    • Hurles, M.E.1    Sykes, B.C.2    Jobling, M.A.3    Forster, P.4
  • 5
    • 68949199596 scopus 로고    scopus 로고
    • On the origins and admixture of Malagasy: New evidence from high-resolution analyses of paternal and maternal lineages
    • Tofanelli S, Bertoncini S, Castri L et al: On the origins and admixture of Malagasy: new evidence from high-resolution analyses of paternal and maternal lineages. Mol Biol Evol 2009; 26: 2109-2124.
    • (2009) Mol Biol Evol , vol.26 , pp. 2109-2124
    • Tofanelli, S.1    Bertoncini, S.2    Castri, L.3
  • 6
    • 77951621827 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequences provide new insights into the Polynesian motif and the peopling of Madgascar
    • Razafindrazaka H, Ricaut F-X, Cox MP et al: Complete mitochondrial DNA sequences provide new insights into the Polynesian motif and the peopling of Madgascar. Eur J Hum Genet 2010; 18: 575-581.
    • (2010) Eur J Hum Genet , vol.18 , pp. 575-581
    • Razafindrazaka, H.1    Ricaut, F.-X.2    Cox, M.P.3
  • 8
    • 67651127143 scopus 로고    scopus 로고
    • New palaeo-zoogeograpical evidence for the settlement of Madagascar. Azania
    • Blench R: New palaeo-zoogeograpical evidence for the settlement of Madagascar. Azania: J Brit Inst East Africa 2007; 42: 69-82.
    • (2007) J Brit Inst East Africa , vol.42 , pp. 69-82
    • Blench, R.1
  • 9
    • 36749084053 scopus 로고    scopus 로고
    • A genomewide association study of skin pigmentation in a South Asian population
    • Stokowski RP, Pant PV, Dadd T et al: A genomewide association study of skin pigmentation in a South Asian population. Am J Hum Genet 2007; 81: 1119-1132.
    • (2007) Am J Hum Genet , vol.81 , pp. 1119-1132
    • Stokowski, R.P.1    Pant, P.V.2    Dadd, T.3
  • 10
    • 60549085065 scopus 로고    scopus 로고
    • Interactions between HERC2, OCA2 and MC1R may influence human pigmentation phenotype
    • Branicki W, Brudnik U, Wojas-Pelc A: Interactions between HERC2, OCA2 and MC1R may influence human pigmentation phenotype. Ann Hum Genet 2009; 73: 160-170.
    • (2009) Ann Hum Genet , vol.73 , pp. 160-170
    • Branicki, W.1    Brudnik, U.2    Wojas-Pelc, A.3
  • 11
    • 67349224664 scopus 로고    scopus 로고
    • DNA-based prediction of human externally visible characteristics in forensics: Motivation, scientific challenges, and ethical considerations
    • Kayser M, Schneider PM: DNA-based prediction of human externally visible characteristics in forensics: motivation, scientific challenges, and ethical considerations. Forensic Sci Int Genet 2009; 3: 154-161.
    • (2009) Forensic Sci Int Genet , vol.3 , pp. 154-161
    • Kayser, M.1    Schneider, P.M.2
  • 12
    • 80052267479 scopus 로고    scopus 로고
    • Prediction of eye and skin color in diverse populations using seven SNPs
    • Spichenok O, Budimlija ZM, Mitchel AA et al: Prediction of eye and skin color in diverse populations using seven SNPs. Forensic Sci Int Genetics 2011; 5: 472-478.
    • (2011) Forensic Sci Int Genetics , vol.5 , pp. 472-478
    • Spichenok, O.1    Budimlija, Z.M.2    Mitchel, A.A.3
  • 13
    • 84858446560 scopus 로고    scopus 로고
    • DNA-based eye colour prediction across Europe with the IrisPlex system
    • Walsh S, Wallstein A, Liu F et al: DNA-based eye colour prediction across Europe with the IrisPlex system. Forensic Sci Int Genetics 2012; 6: 330-340.
    • (2012) Forensic Sci Int Genetics , vol.6 , pp. 330-340
    • Walsh, S.1    Wallstein, A.2    Liu, F.3
  • 14
    • 84856786912 scopus 로고    scopus 로고
    • Verification of eye and skin color predictors in various populations
    • Pneuman A, Budimlija ZM, Caragine T, Prinz M, Wurmbach E: Verification of eye and skin color predictors in various populations. Leg Med 2012; 14: 78-83.
    • (2012) Leg Med , vol.14 , pp. 78-83
    • Pneuman, A.1    Budimlija, Z.M.2    Caragine, T.3    Prinz, M.4    Wurmbach, E.5
  • 15
    • 84879502510 scopus 로고    scopus 로고
    • Prediction of people's origin from degraded DNA - Presentation of SNP assays and calculation of probability
    • Poetsch M, Blohm R, Harder M, Inoue H, von Wurmb-Schwark N, Freitag-Wolf S: Prediction of people's origin from degraded DNA - presentation of SNP assays and calculation of probability. Int J Legal Med 2012; 127: 347-357.
    • (2012) Int J Legal Med , vol.127 , pp. 347-357
    • Poetsch, M.1    Blohm, R.2    Harder, M.3    Inoue, H.4    Von Wurmb-Schwark, N.5    Freitag-Wolf, S.6
  • 16
    • 67349185068 scopus 로고    scopus 로고
    • Pigment phenotype and biogeographical ancestry from ancient skeletal remains: Inferences from multiplexed autosomal SNP analysis
    • Bouakaze C, Keyser C, Crubezy E, Montagnon D, Ludes B: Pigment phenotype and biogeographical ancestry from ancient skeletal remains: inferences from multiplexed autosomal SNP analysis. Int J Legal Med 2009; 123: 315-325.
    • (2009) Int J Legal Med , vol.123 , pp. 315-325
    • Bouakaze, C.1    Keyser, C.2    Crubezy, E.3    Montagnon, D.4    Ludes, B.5
  • 17
    • 76749141381 scopus 로고    scopus 로고
    • Ancient human genome sequence of an extinct Palaeo-Eskimo
    • Rasmussen M, Li Y, Lindgreen S et al: Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 2010; 463: 757-762.
    • (2010) Nature , vol.463 , pp. 757-762
    • Rasmussen, M.1    Li, Y.2    Lindgreen, S.3
  • 18
    • 78650459836 scopus 로고    scopus 로고
    • HaploGrep: A fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups
    • Kloss-Brandstaetter A, Pacher D, Schoenherr S et al: HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. Hum Mutat 2011; 32: 25-32.
    • (2011) Hum Mutat , vol.32 , pp. 25-32
    • Kloss-Brandstaetter, A.1    Pacher, D.2    Schoenherr, S.3
  • 19
    • 64049089255 scopus 로고    scopus 로고
    • Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
    • van Oven M, Kayser M: Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat 2009; 30: E386-E394.
    • (2009) Hum Mutat , vol.30
    • Van Oven, M.1    Kayser, M.2
  • 20
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt H-J, Forster P, Röhl A: Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 1999; 16: 37-48.
    • (1999) Mol Biol Evol , vol.16 , pp. 37-48
    • Bandelt, H.-J.1    Forster, P.2    Röhl, A.3
  • 21
    • 34249898400 scopus 로고    scopus 로고
    • Correspondence analysis in R, with two- and threedimensional graphics: The ca package
    • Nenadic O, Greenacre M: Correspondence analysis in R, with two- and threedimensional graphics: the ca package. J Stat Soft 2007; 20: 1-13.
    • (2007) J Stat Soft , vol.20 , pp. 1-13
    • Nenadic, O.1    Greenacre, M.2
  • 22
    • 74549137243 scopus 로고    scopus 로고
    • A new deep branch of Eurasian mtDNA macrohaplogroup M reveals additional complexity regarding the settlement of Madagascar
    • Ricaut F-X, Razafindrazaka H, Cox MP et al: A new deep branch of Eurasian mtDNA macrohaplogroup M reveals additional complexity regarding the settlement of Madagascar. BMC Genomics 2009; 10: 605-613.
    • (2009) BMC Genomics , vol.10 , pp. 605-613
    • Ricaut, F.-X.1    Razafindrazaka, H.2    Cox, M.P.3
  • 23
    • 77954921564 scopus 로고    scopus 로고
    • Linking the sub-Saharan and West Eurasian gene pools: Maternal and paternal heritage of Tuareg nomads from the African Sahel
    • Pereira L, Cerny V, Cerezo M et al: Linking the sub-Saharan and West Eurasian gene pools: maternal and paternal heritage of Tuareg nomads from the African Sahel. Eur J Hum Genet 2010; 18: 915-923.
    • (2010) Eur J Hum Genet , vol.18 , pp. 915-923
    • Pereira, L.1    Cerny, V.2    Cerezo, M.3
  • 24
    • 84864035324 scopus 로고    scopus 로고
    • Forensic and phylogeographic characterisation of mtDNA lineages from Somalia
    • Mikkelsen M, Fendt L, Röck AW et al: Forensic and phylogeographic characterisation of mtDNA lineages from Somalia. Int J Legal Med 2012; 126: 573-579.
    • (2012) Int J Legal Med , vol.126 , pp. 573-579
    • Mikkelsen, M.1    Fendt, L.2    Röck, A.W.3
  • 25
    • 5044247064 scopus 로고    scopus 로고
    • Insights into the western Bantu dispersal: MtDNA lineage analysis in Angola
    • Plaza S, Salas A, Calafell F et al: Insights into the western Bantu dispersal: mtDNA lineage analysis in Angola. Hum Genet 2004; 115: 439-447.
    • (2004) Hum Genet , vol.115 , pp. 439-447
    • Plaza, S.1    Salas, A.2    Calafell, F.3
  • 26
    • 33846004483 scopus 로고    scopus 로고
    • A mitochondrial stratigraphy for island southeast Asia
    • Hill C, Soares P, Mormina M et al: A mitochondrial stratigraphy for island southeast Asia. Am J Hum Genet 2007; 80: 29-43.
    • (2007) Am J Hum Genet , vol.80 , pp. 29-43
    • Hill, C.1    Soares, P.2    Mormina, M.3
  • 27
    • 70350523905 scopus 로고    scopus 로고
    • Genetic evidence for complexity in ethnic differentiation and history in East Africa
    • Poloni ES, Naciri Y, Bucho R et al: Genetic evidence for complexity in ethnic differentiation and history in East Africa. Ann Hum Genet 2009; 73: 582-600.
    • (2009) Ann Hum Genet , vol.73 , pp. 582-600
    • Poloni, E.S.1    Naciri, Y.2    Bucho, R.3
  • 28
    • 60549086800 scopus 로고    scopus 로고
    • The complex and diversified mitochondrial gene pool of Berber populations
    • Coudray C, Olivieri A, Achilli A et al: The complex and diversified mitochondrial gene pool of Berber populations. Ann Hum Genet 2009; 73: 196-214.
    • (2009) Ann Hum Genet , vol.73 , pp. 196-214
    • Coudray, C.1    Olivieri, A.2    Achilli, A.3
  • 29
    • 77954970582 scopus 로고    scopus 로고
    • Major east-west division underlies y chromosome stratification across Indonesia
    • Karafet TM, Hallmark B, Cox MP et al: Major east-west division underlies Y chromosome stratification across Indonesia. Mol Biol Evol 2010; 27: 1833-1844.
    • (2010) Mol Biol Evol , vol.27 , pp. 1833-1844
    • Karafet, T.M.1    Hallmark, B.2    Cox, M.P.3
  • 30
    • 80052331328 scopus 로고    scopus 로고
    • Human migration through bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum revealed by y chromosomes
    • Cai X, Qin Z, Wen B et al: Human migration through bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum revealed by Y chromosomes. PLoS One 2011; 6: e24282.
    • (2011) PLoS One , vol.6
    • Cai, X.1    Qin, Z.2    Wen, B.3
  • 31
    • 79953861176 scopus 로고    scopus 로고
    • Development of a single base extension method to resolve y chromosome haplogroups in sub-Saharan African populations
    • Naidoo T, Schlebusch CM, Makkan H et al: Development of a single base extension method to resolve Y chromosome haplogroups in sub-Saharan African populations. Investig Genet 2010; 1: 6.
    • (2010) Investig Genet , vol.1 , pp. 6
    • Naidoo, T.1    Schlebusch, C.M.2    Makkan, H.3
  • 32
    • 79952171953 scopus 로고    scopus 로고
    • Y-chromosomal variation in sub-Saharan Africa: Insights into the history of Niger-Congo groups
    • de Filippo C, Barbieri C, Whitten M et al: Y-chromosomal variation in sub-Saharan Africa: insights into the history of Niger-Congo groups. Mol Biol Evol 2011; 28: 1255-1269.
    • (2011) Mol Biol Evol , vol.28 , pp. 1255-1269
    • De Filippo, C.1    Barbieri, C.2    Whitten, M.3
  • 33
    • 42149173752 scopus 로고    scopus 로고
    • Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample
    • Robino C, Crobu F, De Gaetano C et al: Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample. Int J Legal Med 2008; 122: 251-255.
    • (2008) Int J Legal Med , vol.122 , pp. 251-255
    • Robino, C.1    Crobu, F.2    De Gaetano, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.