Kinetics of arsenite oxidation by Variovorax sp. MM-1 isolated from a soil and identification of arsenite oxidase gene

Journal of Hazardous Materials

Volumn 262, Issue , 2013, Pages 997-1003

  Bahar, Md Mezbaul ^a,b   Megharaj, Mallavarapu ^a,b   Naidu, Ravi ^a,b  

^a UNIVERSITY OF SOUTH AUSTRALIA   (Australia)

^b Cooperative Research Centre for Contamination Assessment Remediation of the Environment ^*  (Australia)

Author keywords

Arsenic tolerance; Arsenite oxidase gene; Arsenite oxidation; Arsenite oxidizing bacteria; Detoxification

Indexed keywords

AMINO ACIDS; ARSENIC; CELL CULTURE; DETOXIFICATION; GENES; HEAVY METALS; REMEDIATION; RNA; SOIL POLLUTION;

AMINO ACID SEQUENCE; ARSENIC REMEDIATIONS; ARSENIC TOLERANCES; ARSENITE OXIDASE; ARSENITE OXIDATION; ARSENITE-OXIDIZING BACTERIA; DEGENERATE PRIMERS; HEAVY METAL CONTAMINATED SOILS;

OXIDATION;

ARSENIC ACID; ARSENIC TRIOXIDE; OXIDOREDUCTASE; RNA 16S;

ARSENIC; BACTERIUM; DETOXIFICATION; OXIDATION; POLLUTION TOLERANCE; REACTION KINETICS; SOIL POLLUTION;

ACIDOVORAX; ALCALIGENES FAECALIS; AMINO ACID SEQUENCE; ARTICLE; BIOREMEDIATION; BORDETELLA; BURKHOLDERIA CEPACIA; CELL SUSPENSION; CHEMICAL REACTION KINETICS; COMAMONAS; DNA SEQUENCE; ENZYME MECHANISM; GENE IDENTIFICATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION KINETICS; PH; PHYLOGENY; POLYMERASE CHAIN REACTION; PSEUDOMONAS STUTZERI; RHIZOBIUM; SOIL; SPECIES IDENTIFICATION; VARIOVORAX;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; VARIOVORAX;

ARSENIC TOLERANCE; ARSENITE OXIDASE GENE; ARSENITE OXIDATION; ARSENITE OXIDIZING BACTERIA; DETOXIFICATION;

ARSENIC; ARSENITES; BETAPROTEOBACTERIA; BIODEGRADATION, ENVIRONMENTAL; CLONING, MOLECULAR; DNA PRIMERS; GENES, BACTERIAL; KINETICS; OXIDATION-REDUCTION; OXIDOREDUCTASES; OXYGEN; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

EID: 84887610160     PISSN: 03043894     EISSN: 18733336     Source Type: Journal    
DOI: 10.1016/j.jhazmat.2012.11.064     Document Type: Article

References (41)

1. Smedley P.L., Kinniburgh D.G. A review of the source, behaviour and distribution of arsenic in natural waters. Appl. Geochem. 2002, 17:517-568.
2. Halim M.A., Majumder R.K., Nessa S.A., Hiroshiro Y., Uddin M.J., Shimada J., Jinno K. Hydrogeochemistry and arsenic contamination of groundwater in the Ganges Delta Plain, Bangladesh. J. Hazard. Mater. 2009, 164:1335-1345.
3. Agency, USEP, National Drinking Water Regulations, Arsenic and clarifications to compliance and new source contaminant monitoring, 40 CFR part 141 and 142, Washington DC, 2001.
4. Neff J.M. Ecotoxicology of arsenic in the marine environment. Environ. Toxicol. Chem. 1997, 16:917-927.
5. Ordonez E., Letek M., Valbuena N., Gil J.A., Mateos L.M. Analysis of genes involved in arsenic resistence in Corynobacterium glutamicum ATCC13032. Appl. Environ. Microbiol. 2005, 71:6206-6215.
6. Jekel M.R., Amy G.L. Arsenic removal during drinking water treatment. Interface Science in Drinking Water Treatment 2006, 193-206. Elsevier Ltd, The Netherlands. G. Newcombe, D. Dixon (Eds.).
7. USEPA, Technologies and costs for removal of arsenic from drinking water, USEPA report 815-R-00-028, USEPA, Office of Groundwater and Drinking water, Washington DC, USA, 2002.
8. Zouboulis A.I., Latsoyiannis I.A. Recent advances in the bioremediation of arsenic-contaminated groundwaters. Environ. Int. 2005, 31:213-219.
9. Santini J.M., Sly L.I., Schnagl R.D., Macy J.M. A new chemolithotrophic arsenite-oxidising bacterium isolated from a gold mine: phylogenetic, physiological, and preliminary biochemical studies. Appl. Environ. Microbiol. 2000, 66:92-97.
10. Garcia-Dominguez E., Mumford A., Rhine E.D., Paschal A., Young L.Y. Novel autotrophic arsenite-oxidizing bacteria isolated from soil and sediments. FEMS Microbiol. Ecol. 2009, 66:401-410.
11. Muller D., Lievremont D., Simeonova D.D., Hubert J.C., Lett M.C. Arsenite oxidase (aox) genes from a metal-resistant β-proteobacterium. J. Bacteriol. 2003, 185:135-141.
12. Ellis P.J., Conrads T., Hille R., Kuhn P. Crystal structure of the 100 KDa arsenite oxidase from Alcaligenes faecalis in two crystal forms at 1.64Å and 2.03Å. Structure 2001, 9:125-132.
13. Green H.H. Description of a bacterium that oxidises arsenite and one which reduces arsenate to arsenite from a cattle-dipping tank. S. Afr. J. Sci. 1918, 14:465-467.
14. Bahar M.M., Megharaj M., Naidu R. Arsenic bioremediation potential of a new arsenite-oxidizing bacterium Stenotrophomonas sp. MM-7 isolated from soil. Biodegradation 2012, 23:803-812.
15. Salmassi T.M., Venkateswaran K., Satomi M., Nealson K., Newman D.K., Hering J.G. Oxidation of arsenite by Agrobacterium albertimagni AOL15, sp. Nov., isolated from hot creek California. Geomicrobiol. J. 2002, 19:53-66.
16. Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, Chichester. E. Stackebrandt, M. Goodfellow (Eds.).
17. Rhine E.D., Ni Chandhain S.M., Zylstra G.J., Young L.Y. The arsenite oxidase genes (aroAB) in novel chemoautotrophic arsenite oxidisers. Biochem. Biophys. Res. Commun. 2007, 354:662-667.
18. Lett M.-C., Muller D., Lièvremont D., Silver S., Santini J. Unified nomenclature for genes involved in prokaryotic aerobic arsenite oxidation. J. Bacteriol. 2012, 194:207-208.
19. Macur R., Jackson C., Botero L., McDermott T., Inskeep W. Bacterial populations associated with the oxidation and reduction of arsenic in an unsaturated soil. Environ. Sci. Technol. 2004, 38:104-111.
20. Janda J.M., Abbott S.L. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J. Clin. Microbiol. 2007, 45:2761-2764.
21. Hoeft S.E., Blum J.S., Stolz J.F., Tabita F.R., Witte B., King G.M., Santini J.M., Oremland R.S. Alkalilimnicola ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor. Int. J. Syst. Evol. Microbiol. 2007, 57:504-512.
22. Turner A.W. Bacterial oxidation of arsenite. I. Description of bacteria isolated from arsenical cattle-dipping fluids. Aust. J. Biol. Sci. 1954, 7:452-476.
23. Wakao N., Koyatsu H., Komai Y., Shimokawara H., Sakurai Y., Shiota H. Microbial oxidation of arsenite and occurrence of arsenite-oxidizing bacteria in acid mine water from a sulfur-pyrite mine. Geomicrobiol. J. 1998, 6:11-24.
24. Wegger W., Lievremont D., Perret M., Lagarde F., Hubert J.-C., Leroy M., Lett M.-C. Oxidation of arsenite to arsenate by a bacterium isolated from an aquatic environment. Biometals 1999, 12:141-149.
25. Oremland R.S., Hoeft S.E., Santini J.M., Bano N., Hollibaugh R.A., Hollibaugh J.T. Anaerobic oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1. Appl. Environ. Microbiol. 2002, 68:4795-4802.
26. Bachate S.P., Khapare R.M., Kodam K.M. Oxidation of arsenite by two β-proteobacteria isolated from soil. Appl. Microbiol. Biotechnol. 2012, 93:2135-2145.
27. Kashyap D.R., Botero L.M., Franck W.L., Hassett D.J., McDermott T.R. Complex regulation of arsenite oxidation in Agrobacterium tumefaciens. J. Bacteriol. 2006, 188:1081-1088.
28. Duquense K., Lieutaud A., Ratouchniak J., Muller D., Lett M., Bonnefoy V. Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp. from the strain isolation to the gene study. Environ. Microbiol. 2008, 10:228-237.
29. Lieutaud A., van Lis R., Duval S., Capowiez L., Muller D., Lebrun R., Lignon S. Arsenite oxidation from Ralstonia sp. 22: characterisation of the enzyme and its interaction with soluble cytochromes. J. Biol. Chem. 2010, 285:20433-20441.
30. Sehlin H.M., Lindström E.B. Oxidation and reduction of arsenic by Sulfolobus acidocaldarius strain BC. FEMS Microbiol. Lett. 1992, 93:87-92.
31. Dastidar A., Wang Y.-T. Arsenite oxidation by batch cultures of Thiomonas arsenivorans strainb6. J. Environ. Eng. 2009, 135:708-715.
32. Battaglia-Brunet F., Dictor M.-C., Garrido F., Crouzet C., Morin D., Dekeyser K., Clarens M., Baranger P. An arsenic(III)-oxidizing bacterial population: selection, characterization, and performance in reactors. J. Appl. Microbiol. 2002, 93:656-667.
33. Osborne F.H., Ehrlich H.L. Oxidation of arsenite by a soil isolate of Alcaligenes. J. Appl. Bacteriol. 1976, 41:295-305.
34. Suttigarn A., Wang Y.-T. Arsenite oxidation by Alcaligenes faecalis strain O1201. J. Environ. Eng. 2005, 131:1293-1301.
35. Krumova K., Nikolovska M., Groudeva V. Isolation and Identification of arsenic-transforming bacteria from arsenic contaminated sites in Bulgaria. Biotechnol. Biotechnol. Equip. 2008, 22:721-728.
36. Campos V.L., Escalante G., Yañez J., Zaror C.A., Mondaca M.A. Isolation of arsenite-oxidizing bacteria from a natural biofilm associated to volcanic rocks of Atacama Desert, Chile. J. Basic Microbiol. 2009, 49:S93-S97.
37. Campos V.L., Valenzuela C., Yarza P., Kampfer P., Vidal R., Zaror C., Mondaca M.-A., Lopez-Lopez A., Rosello-Mora R. Pseudomonas arsenicoxydans sp. nov., an arsenite-oxidizing strain isolated from the Atacama Desert. Syst. Appl. Microbiol. 2010, 33:193-197.
38. Anderson G.L., Williams J., Hille R. The purification and characterisation of arsenite oxidase from Alcaligenes faecalis, a molybdenum containing hydroxylase. J. Biol. Chem. 1992, 267:23674-23682.
39. Prasad K.S., Subramanian V., Paul J. Purification and characterisation of arsenite oxidase from Arthrobacter sp. Biometals 2009, 22:711-721.
40. Hoven N., Vanden R., Santini J.M. arsenite oxidation by the heterotrophs Hydrogenophaga sp.str. NT-14: the arsenite oxidase and its physiological electron acceptor. Biochim. Biophys. Acta 2004, 1656:148-155.
41. Santini J.M., Hoven N., Vanden R. Molybdenum containing arsenite oxidase of chemolithoautotrophic arsenite oxidiser NT-26. J. Bacteriol. 2004, 186:1614-1619.