Pseudomonas arsenicoxydans sp nov., an arsenite-oxidizing strain isolated from the Atacama desert

Systematic and Applied Microbiology

Volumn 33, Issue 4, 2010, Pages 193-197

  Campos, Victor L ^a   Valenzuela, Cristian ^a   Yarza, Pablo ^b   Kämpfer, Peter ^c   Vidal, Roberto ^d   Zaror, C ^a   Mondaca, Maria Angelica ^a   Lopez Lopez, Arantxa ^b   Rosselló Móra, Ramon ^b  

^a UNIVERSITY OF CONCEPCIÓN   (Chile)

^b INSTITUTO MEDITERRÁNEO DE ESTUDIOS AVANZADOS   (Spain)

^c JUSTUS LIEBIG UNIVERSITY   (Germany)

^d UNIVERSITY OF CHILE   (Chile)

Author keywords

16S rRNA gene; Arsenic tolerance; Arsenite oxidation; Fatty acid profile; MALDI TOF; MLSA; Pseudomonas arsenicoxydans sp. nov.; Taxonomy

Indexed keywords

CATALASE; FATTY ACID; OXIDOREDUCTASE; RNA 16S;

AEROBIC BACTERIUM; ARSENITE OXIDIZING BACTERIUM; ARTICLE; BACTERIAL FLAGELLUM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CELL CULTURE; CHILE; CLASSIFICATION; CONTROLLED STUDY; DESERT; DNA RNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; GENOTYPE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MICROBIAL MORPHOLOGY; MULTILOCUS SEQUENCE TYPING; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTES BY METABOLISM; PSEUDOMONAS; PSEUDOMONAS ARSENICOXYDANS; SEDIMENT;

AEROBIOSIS; ARSENITES; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; CATALASE; CHILE; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; FLAGELLA; LOCOMOTION; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; OXIDOREDUCTASES; PHYLOGENY; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOMONAS;

EID: 77952892093     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2010.02.007     Document Type: Article

References (38)

1. Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 1995, 59:143-169.
2. Anderson G.L., Williams J., Hiller R. The purification and characterisation of arsenite oxidase from Alcaligenes faecalis, a molybdenum-containing hydroxylase. J. Biol. Chem. 1992, 267:23674-23682.
3. Bataglia F., Dictor M., Garrido F., Morin D., Dekeyser M., Clarens M., Baranger P. An arsenic (III)-oxidizing bacterial population: selection, characterization, and performance in reactors. Appl. Environ. Microbiol. 1995, 93:656-667.
4. Ellis P., Conrads T., Hille R., Kuhn P. Crystal structure of the 100kDa arsenite oxidase from Alcaligenes faecalis in two crystal forms at 1.64 and 2.03Å. Structure 2001, 9:125-132.
5. Frapolli M., Défago G., Moënne-Loccoz I. Multilocus sequence analysis of biocontrol fluorescent Pseudomonas spp. producing the antifungal compound 2,4-diacetylphloroglucinol. Environ. Microbiol. 2007, 9:1939-1955.
6. García-Martinez J., Acinas S.G., Antón A.I., Rodríguez-Valera F. Use of the 16S-23S ribosomal genes spacer region in studies of prokaryotic diversity. J. Microbiol. Meth. 1999, 36:55-64.
7. Gordillo F., Chávez F., Jerez C. Motility and chemotaxis of Pseudomonas sp. B4 towards polychlorobiphenyls and chlorobenzoates. FEMS Microbiol. Ecol. 2007, 60:322-328.
8. Green H.H. Description of a bacterium which oxidizes arsenite to arsenate and of one which reduces arsenate to arsenite, isolated from a cattle-dipping tank, S. Afr. J. Sci. 1918, 14:465-467.
9. Hilario E., Buckley T., Young J. Improved resolution on the phylogenetic relationships among Pseudomonas by the combined analysis of atpD, carA, recA and 16S rDNA. Antonie van Leeuwenhoek 2004, 86:51-64.
10. Ilyaletdonov A.N., Abdrashitova S.A. Autotrophic oxidation of arsenic by a culture of Pseudomonas arsenitoxidans. Mikrobiologiya 1981, 50:197-204.
11. Kallow, W., Erhard, M., Shah, H.N., Raptakis, E., Welker, M., in press. MALDI-TOF MS for Microbial Identification: Years of Experimental Development to an Established Protocol. In: Shah, H.N., Gharbia, S.E., Encheva, V. (Eds.), Mass Spectrometry for Microbial Proteomics. John Wiley & Sons, London.
12. Kampfer P., Kroppenstedt R.M. Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can. J. Microbiol. 1996, 42:989-1005.
13. Kersters K., Ludwig W., Vancanneyt M., De Vos P., Gillis M., Schleifer K.H. Recent changes in the classification of the pseudomonads an overview. Syst. Appl. Microbiol. 1996, 19:465-477.
14. Kumaresan M., Riyazuddin P. Overview of speciation chemistry of arsenic. Curr. Sci. 2001, 80:837-846.
15. Leblanc M., Achard B., Personne J.C. Arsenic-rich bacterial mats from acidic mine waters (Carnoulès, France). Mineral Deposits: from their origin to their environmental impacts 1995, 127-130. Balkema, Rotterdam. Pasava, Kribek, Zak (Eds.).
16. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S., Jobb G., Förster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., König A., Liss T., Lussmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., Schleifer K.H. ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32:1363-1371.
17. Macur R., Jackson C., Botero L., McDermott T., Inskeep W. Bacterial population associated with the oxidation and reduction of arsenic in an unsaturated soil. Environ. Sci. Technol. 2004, 38:104-111.
18. Matlakowska R., Drewniak L., Sklodowska A. Arsenic-hypertolerant pseudomonads isolated from ancient gold and copper-bearing black shale deposits. Geomicrob. J. 2008, 25:357-362.
19. Moore E.R.B., Mau M., Arnscheidt A., Böttger E.C., Hutson R.A., Collins M.D., Van de Peer Y., De Wachter R., Timmis K.N. The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas sensu stricto and estimation of the natural intrageneric relationships. Syst. Appl. Microbiol. 1996, 19:478-492.
20. Muller D., Liévremont D., Simeonova D., Hubert J.C., Lett M.C. Arsenite oxidase aox genes from a metal-resistant β-proteobacterium. J. Bacteriol. 2003, 185:35-141.
21. Muyzer G., Teske A., Wirsen C., Jannasch H.W. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 1995, 164:165-172.
22. Muyzer G., Waal E.D., Uitterlinden A. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction - amplified genes coding for16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
23. Osborne F.H., Ehrlich H.L. Oxidation of arsenite by a soil isolate of Alcaligenes. J. Appl. Bacteriol. 1976, 41:95-305.
24. Peix A., Rami{dotless}rez-Bahena H., Velásquez E. Historical evolution and current status of the taxonomy of genus Pseudomonas. Infect. Genet. Evol. 2009, 9:1132-1147.
25. Phillips S.E., Taylor M.L. Oxidation of arsenite to arsenate by Alcaligenes faecalis. Appl. Environ. Microbiol. 1976, 32:392-399.
26. Rosselló-Mora R., Amann R. The species concept for prokaryotes. FEMS Microbiol. Rev. 2001, 25:39-67.
27. Sambrook J., Fritsch E.F., Mantatls T. Molecular Cloning. A Laboratory Manual 1989, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York. second ed.
28. Silver S., Phung L.T. A bacterial view of the periodic table: genes and proteins for toxic inorganic ions. J. Ind. Microbiol. Biotechnol. 2005, 32:587-605.
29. Smibert R.M., Krieg N.R. Phenotypic characterization. Methods for General and Molecular Bacteriology 1994, 607-654. American Society for Microbiology, Washington, DC. P. Gerhardt (Ed.).
30. Sória-Carrasco V., Valens-Vadell M., Peña A., Antón J., Amann R., Castresana R., Rosselló-Móra R. Phylogenetic position of Salinibacter ruber based on concatenated protein alignments. Syst. Appl. Microbiol. 2007, 30:171-179.
31. Stackebrandt E., Frederiksen W., Garrity G.M., Grimont P.A., Kämpfer P., Maiden M.C., Nesme X., Rosselló-Móra R., Swings J., Trüper H.G., Vauterin L., Ward A.C., Whitman W.B. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 2002, 52:1043-1047.
32. Turner A.W. Bacterial oxidation of arsenite. Nature (London) 1949, 164:76-77.
33. Turner A.W., Legge J.W. Bacterial oxidation of arsenite. II. The activity of washed suspensions. Aust. J. Biol. Sci. 1954, 7:479-495.
34. Turner A.W. Bacterial oxidation of arsenite. I. Description of bacteria isolated from arsenical cattle-dipping fluids. Aust. J. Biol. Sci. 1954, 7:452-478.
35. Urdiain M., López-López A., Gonzalo C., Busse H.J., Langer S., Kämpfer P., Rosselló-Móra R. Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a novel genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense. Syst. Appl. Microbiol. 2000, 31:339-351.
36. Vanlaere E., Baldwin A., Gevers D., Henry D., De Brandt E., LiPuma J., Mahenthiralingam E., Speert D., Dowson C., Bañadme P. Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. Int. J. Syst. Evol. Microbiol. 2009, 59:102-111.
37. Yañez J., Fierro V., Mansilla H., Figueroa L., Cornejo L., Barnes R. Arsenic speciation in human hair: a new perspective for epidemiological assessment in chronic arsenicism. J. Environ. Monit. 2005, 7:1335-1341.
38. Yarza P., Richter M., Peplies J., Euzéby J., Amann R., Schleifer K.H., Ludwig W., Glöckner F.O., Rosselló-Móra R. The All-Species Living Tree Project: a regularly updated 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst. Appl. Microbiol. 2008, 31:241-250.