-
1
-
-
0036789916
-
An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein
-
Ando, R., Hama, H., Yamamoto-Hino, M., Mizuno, H., and Miyawaki, A. (2002) An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein Proc. Natl. Acad. Sci. U.S.A. 99, 12651-12656
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 12651-12656
-
-
Ando, R.1
Hama, H.2
Yamamoto-Hino, M.3
Mizuno, H.4
Miyawaki, A.5
-
2
-
-
8644246666
-
EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion
-
Wiedenmann, J., Ivanchenko, S., Oswald, F., Schmitt, F., Roecker, C., Salih, A., Spindler, K.-D., and Nienhaus, G. U. (2004) EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion Proc. Natl. Acad. Sci. U.S.A. 101, 15905-15910
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15905-15910
-
-
Wiedenmann, J.1
Ivanchenko, S.2
Oswald, F.3
Schmitt, F.4
Roecker, C.5
Salih, A.6
Spindler, K.-D.7
Nienhaus, G.U.8
-
3
-
-
0037007086
-
Diversity and evolution of the green fluorescent protein family
-
Labas, Y. A., Gurskaya, N. G., Yanushevich, Y. G., Fradkov, A. F., Lukyanov, K. A., Lukyanov, S. A., and Matz, M. V. (2002) Diversity and evolution of the green fluorescent protein family Proc. Natl. Acad. Sci. U.S.A. 99, 4256-4261
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 4256-4261
-
-
Labas, Y.A.1
Gurskaya, N.G.2
Yanushevich, Y.G.3
Fradkov, A.F.4
Lukyanov, K.A.5
Lukyanov, S.A.6
Matz, M.V.7
-
4
-
-
4444228305
-
Photoconversion of the chromophore of a fluorescent protein from Dendronephthya sp
-
Pakhomov, A. A., Martynova, N. Y., Gurskaya, N. G., Balashova, T. A., and Martynov, V. I. (2004) Photoconversion of the chromophore of a fluorescent protein from Dendronephthya sp Biochemistry (Moscow) 69, 901-908
-
(2004)
Biochemistry (Moscow)
, vol.69
, pp. 901-908
-
-
Pakhomov, A.A.1
Martynova, N.Y.2
Gurskaya, N.G.3
Balashova, T.A.4
Martynov, V.I.5
-
5
-
-
33644632109
-
Evolution of function and color in GFP-like proteins
-
Matz, M. V., Labas, Y. A., and Ugalde, J. (2006) Evolution of function and color in GFP-like proteins Methods Biochem. Anal. 47, 139-161
-
(2006)
Methods Biochem. Anal.
, vol.47
, pp. 139-161
-
-
Matz, M.V.1
Labas, Y.A.2
Ugalde, J.3
-
6
-
-
70350302609
-
Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging
-
Lippincott-Schwartz, J. and Patterson, G. H. (2009) Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging Trends Cell Biol. 19, 555-565
-
(2009)
Trends Cell Biol.
, vol.19
, pp. 555-565
-
-
Lippincott-Schwartz, J.1
Patterson, G.H.2
-
7
-
-
77956152936
-
Mechanistic diversity of red fluorescence acquisition by GFP-like proteins
-
Wachter, R. M., Watkins, J. L., and Kim, H. (2010) Mechanistic diversity of red fluorescence acquisition by GFP-like proteins Biochemistry 49, 7417-7427
-
(2010)
Biochemistry
, vol.49
, pp. 7417-7427
-
-
Wachter, R.M.1
Watkins, J.L.2
Kim, H.3
-
8
-
-
79956295835
-
From EosFP to mIrisFP: Structure-based development of advanced photoactivatable marker proteins of the GFP-family
-
Wiedenmann, J., Gayda, S., Adam, V., Oswald, F., Nienhaus, K., Bourgeois, D., and Nienhaus, G. U. (2011) From EosFP to mIrisFP: Structure-based development of advanced photoactivatable marker proteins of the GFP-family J. Biophotonics 4, 377-390
-
(2011)
J. Biophotonics
, vol.4
, pp. 377-390
-
-
Wiedenmann, J.1
Gayda, S.2
Adam, V.3
Oswald, F.4
Nienhaus, K.5
Bourgeois, D.6
Nienhaus, G.U.7
-
9
-
-
50549091558
-
Diversity and evolution of coral fluorescent proteins
-
Alieva, N. O., Konzen, K. A., Field, S. F., Meleshkevitch, E. A., Hunt, M. E., Beltran-Ramirez, V., Miller, D. J., Wiedenmann, J., Salih, A., and Matz, M. V. (2008) Diversity and evolution of coral fluorescent proteins PLoS One 3, e2680
-
(2008)
PLoS One
, vol.3
, pp. 2680
-
-
Alieva, N.O.1
Konzen, K.A.2
Field, S.F.3
Meleshkevitch, E.A.4
Hunt, M.E.5
Beltran-Ramirez, V.6
Miller, D.J.7
Wiedenmann, J.8
Salih, A.9
Matz, M.V.10
-
10
-
-
19244366496
-
Evolution of coral pigments recreated
-
Ugalde, J. A., Chang, B. S. W., and Matz, M. V. (2004) Evolution of coral pigments recreated Science 305, 1433-1433
-
(2004)
Science
, vol.305
, pp. 1433-1433
-
-
Ugalde, J.A.1
Chang, B.S.W.2
Matz, M.V.3
-
11
-
-
74549160887
-
Retracing evolution of red fluorescence in GFP-like proteins from Faviina corals
-
Field, S. F. and Matz, M. V. (2010) Retracing evolution of red fluorescence in GFP-like proteins from Faviina corals Mol. Biol. Evol. 27, 225-233
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 225-233
-
-
Field, S.F.1
Matz, M.V.2
-
12
-
-
0242361312
-
Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein
-
Mizuno, H., Mal, T. K., Tong, K. I., Ando, R., Furuta, T., Ikura, M., and Miyawaki, A. (2003) Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein Mol. Cell 12, 1051-1058
-
(2003)
Mol. Cell
, vol.12
, pp. 1051-1058
-
-
Mizuno, H.1
Mal, T.K.2
Tong, K.I.3
Ando, R.4
Furuta, T.5
Ikura, M.6
Miyawaki, A.7
-
13
-
-
21544445247
-
Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP
-
Nienhaus, K., Nienhaus, G. U., Wiedenmann, J., and Nar, H. (2005) Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP Proc. Natl. Acad. Sci. U.S.A. 102, 9156-9159
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 9156-9159
-
-
Nienhaus, K.1
Nienhaus, G.U.2
Wiedenmann, J.3
Nar, H.4
-
14
-
-
16844384763
-
Semi-rational engineering of a coral fluorescent protein into an efficient highlighter
-
Tsutsui, H., Karasawa, S., Shimizu, H., Nukina, N., and Miyawaki, A. (2005) Semi-rational engineering of a coral fluorescent protein into an efficient highlighter EMBO Rep. 6, 233-238
-
(2005)
EMBO Rep.
, vol.6
, pp. 233-238
-
-
Tsutsui, H.1
Karasawa, S.2
Shimizu, H.3
Nukina, N.4
Miyawaki, A.5
-
15
-
-
72049104771
-
The E1 Mechanism in Photo-Induced β-Elimination Reactions for Green-to-Red Conversion of Fluorescent Proteins
-
Tsutsui, H., Shimizu, H., Mizuno, H., Nukina, N., Furuta, T., and Miyawaki, A. (2009) The E1 Mechanism in Photo-Induced β-Elimination Reactions for Green-to-Red Conversion of Fluorescent Proteins Chem. Biol. 16, 1140-1147
-
(2009)
Chem. Biol.
, vol.16
, pp. 1140-1147
-
-
Tsutsui, H.1
Shimizu, H.2
Mizuno, H.3
Nukina, N.4
Furuta, T.5
Miyawaki, A.6
-
16
-
-
34548397683
-
Crystallographic evidence for water-assisted photo-induced peptide cleavage in the stony coral fluorescent protein Kaede
-
Hayashi, I., Mizuno, H., Tong, K. I., Furuta, T., Tanaka, F., Yoshimura, M., Miyawaki, A., and Ikura, M. (2007) Crystallographic evidence for water-assisted photo-induced peptide cleavage in the stony coral fluorescent protein Kaede J. Mol. Biol. 2007, 918-926
-
(2007)
J. Mol. Biol.
, vol.2007
, pp. 918-926
-
-
Hayashi, I.1
Mizuno, H.2
Tong, K.I.3
Furuta, T.4
Tanaka, F.5
Yoshimura, M.6
Miyawaki, A.7
Ikura, M.8
-
17
-
-
70450177442
-
Photoconversion of the fluorescent protein EosFP: A hybrid potential simulation study reveals intersystem crossings
-
Lelimousin, M., Adam, V., Nienhaus, G. U., Bourgeois, D., and Field, M. J. (2009) Photoconversion of the fluorescent protein EosFP: A hybrid potential simulation study reveals intersystem crossings J. Am. Chem. Soc. 131, 16814-16823
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 16814-16823
-
-
Lelimousin, M.1
Adam, V.2
Nienhaus, G.U.3
Bourgeois, D.4
Field, M.J.5
-
18
-
-
78650159648
-
Competitive mechanistic pathways for green-to-red photoconversion in the fluorescent protein Kaede: A computational study
-
Li, X., Chung, L. W., Mizuno, H., Miyawaki, A., and Morokuma, K. (2010) Competitive mechanistic pathways for green-to-red photoconversion in the fluorescent protein Kaede: A computational study J. Phys. Chem. B 114, 16666-16675
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 16666-16675
-
-
Li, X.1
Chung, L.W.2
Mizuno, H.3
Miyawaki, A.4
Morokuma, K.5
-
19
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
20
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A., Grosse-Kunstleve, R., Adams, P., Winn, M., Storoni, L., and Read, R. (2007) Phaser crystallographic software J. Appl. Crystallogr. 40, 658-674
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.1
Grosse-Kunstleve, R.2
Adams, P.3
Winn, M.4
Storoni, L.5
Read, R.6
-
21
-
-
33748337934
-
The Buccaneer software for automated model building
-
Cowtan, K. (2006) The Buccaneer software for automated model building Acta Crystallogr. D62, 1002-1011
-
(2006)
Acta Crystallogr.
, vol.62
, pp. 1002-1011
-
-
Cowtan, K.1
-
22
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P. and Cowtan, K. (2004) Coot: Model-building tools for molecular graphics Acta Crystallogr. D60, 2126-2132
-
(2004)
Acta Crystallogr.
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
23
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelyhood method
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelyhood method Acta Crystallogr. D53, 240-255
-
(1997)
Acta Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
24
-
-
33751081556
-
Exploring chromophore-protein interactions in fluorescent protein cmFP512 from Cerianthus membranaceus: X-ray structure analysis and optical spectroscopy
-
Nienhaus, K., Renzi, F., Vallone, B., Wiedenmann, J., and Nienhaus, G. U. (2006) Exploring chromophore-protein interactions in fluorescent protein cmFP512 from Cerianthus membranaceus: X-ray structure analysis and optical spectroscopy Biochemistry 45, 12942-12953
-
(2006)
Biochemistry
, vol.45
, pp. 12942-12953
-
-
Nienhaus, K.1
Renzi, F.2
Vallone, B.3
Wiedenmann, J.4
Nienhaus, G.U.5
-
25
-
-
0033609034
-
Structural and spectral response of green fluorescent protein variants to changes in pH
-
Elsliger, M.-A., Wachter, R. M., Hanson, G. T., Kallio, K., and Remington, S. J. (1999) Structural and spectral response of green fluorescent protein variants to changes in pH Biochemistry 38, 5296-5301
-
(1999)
Biochemistry
, vol.38
, pp. 5296-5301
-
-
Elsliger, M.-A.1
Wachter, R.M.2
Hanson, G.T.3
Kallio, K.4
Remington, S.J.5
-
26
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
Painter, J. and Merritt, E. A. (2006) Optimal description of a protein structure in terms of multiple groups undergoing TLS motion Acta Crystallogr. D62, 439-450
-
(2006)
Acta Crystallogr.
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
27
-
-
0033212815
-
Integration of macromolecular diffraction data
-
Leslie, A. G. (1999) Integration of macromolecular diffraction data Acta Crystallogr. D55, 1696-1702
-
(1999)
Acta Crystallogr.
, vol.55
, pp. 1696-1702
-
-
Leslie, A.G.1
-
28
-
-
0028103275
-
The CCP4 Suite: Programs for Protein Crystallography
-
Collaborative Computational Project No. 4
-
Collaborative Computational Project No. 4 (1994) The CCP4 Suite: Programs for Protein Crystallography Acta Crystallogr. D50, 760-763
-
(1994)
Acta Crystallogr.
, vol.50
, pp. 760-763
-
-
-
30
-
-
66649126345
-
Structural basis of enhanced photoconversion yield in green fluorescent protein-like protein Dendra2
-
Adam, V., Nienhaus, K., Bourgeois, D., and Nienhaus, G. U. (2009) Structural basis of enhanced photoconversion yield in green fluorescent protein-like protein Dendra2 Biochemistry 48, 4905-4915
-
(2009)
Biochemistry
, vol.48
, pp. 4905-4915
-
-
Adam, V.1
Nienhaus, K.2
Bourgeois, D.3
Nienhaus, G.U.4
-
31
-
-
80055083857
-
Rational design of photoconvertible and biphotochromic fluorescent proteins for advanced microscopy applications
-
Adam, V., Moeyaert, B., David, C. C., Mizuno, H., Lelimousin, M., Dedecker, P., Ando, R., Miyawaki, A., Michiels, J., Engelborghs, Y., and Hofkens, J. (2011) Rational design of photoconvertible and biphotochromic fluorescent proteins for advanced microscopy applications Chem. Biol. 18, 1241-1251
-
(2011)
Chem. Biol.
, vol.18
, pp. 1241-1251
-
-
Adam, V.1
Moeyaert, B.2
David, C.C.3
Mizuno, H.4
Lelimousin, M.5
Dedecker, P.6
Ando, R.7
Miyawaki, A.8
Michiels, J.9
Engelborghs, Y.10
Hofkens, J.11
-
32
-
-
84871893256
-
Optical pH detection within a protein crystal
-
Seemann, K. M., Kiefersauer, R., Jacob, U., and Kuhn, B. (2012) Optical pH detection within a protein crystal J. Phys. Chem. B 116, 9873-9881
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 9873-9881
-
-
Seemann, K.M.1
Kiefersauer, R.2
Jacob, U.3
Kuhn, B.4
-
33
-
-
0035895225
-
Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-Å resolution
-
Yarbrough, D., Wachter, R. M., Kallio, K., Matz, M. V., and Remington, S. J. (2001) Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-Å resolution Proc. Natl. Acad. Sci. U.S.A. 98, 462-467
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 462-467
-
-
Yarbrough, D.1
Wachter, R.M.2
Kallio, K.3
Matz, M.V.4
Remington, S.J.5
-
34
-
-
34249844859
-
Structural basis for reversible photobleaching of a green fluorescent protein homologue
-
Henderson, J. N., Ai, H.-w., Campbell, R. E., and Remington, S. J. (2007) Structural basis for reversible photobleaching of a green fluorescent protein homologue Proc. Natl. Acad. Sci. U.S.A. 104, 6672-6677
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 6672-6677
-
-
Henderson, J.N.1
Campbell, R.E.2
Remington, S.J.3
-
35
-
-
34548145945
-
Structural basis for reversible photoswitching in Dronpa
-
Andresen, M., Stiel, A. C., Trowitzsch, S., Weber, G., Eggeling, C., Wahl, M. C., Hell, S. W., and Jakobs, S. (2007) Structural basis for reversible photoswitching in Dronpa Proc. Natl. Acad. Sci. U.S.A. 104, 13005-13009
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 13005-13009
-
-
Andresen, M.1
Stiel, A.C.2
Trowitzsch, S.3
Weber, G.4
Eggeling, C.5
Wahl, M.C.6
Hell, S.W.7
Jakobs, S.8
-
36
-
-
33846850271
-
1.8 Å bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants
-
Stiel, A. C., Trowitzsch, S., Weber, G., Andresen, M., Eggeling, C., Hell, S. W., Jakobs, S., and Wahl, M. C. (2007) 1.8 Å bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants Biochem. J. 402, 35-42
-
(2007)
Biochem. J.
, vol.402
, pp. 35-42
-
-
Stiel, A.C.1
Trowitzsch, S.2
Weber, G.3
Andresen, M.4
Eggeling, C.5
Hell, S.W.6
Jakobs, S.7
Wahl, M.C.8
-
37
-
-
48249088102
-
Light-dependent regulation of structural flexibility in a photochromic fluorescent protein
-
Mizuno, H., Mal, T. K., Walchli, M., Kikuchi, A., Fukano, T., Ando, R., Jeyakanthan, J., Taka, J., Shiro, Y., Ikura, M., and Miyawaki, A. (2008) Light-dependent regulation of structural flexibility in a photochromic fluorescent protein Proc. Natl. Acad. Sci. U.S.A. 105, 9227-9232
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 9227-9232
-
-
Mizuno, H.1
Mal, T.K.2
Walchli, M.3
Kikuchi, A.4
Fukano, T.5
Ando, R.6
Jeyakanthan, J.7
Taka, J.8
Shiro, Y.9
Ikura, M.10
Miyawaki, A.11
-
38
-
-
0343320717
-
Coordinating properties of the amide bond. Stability and structure of metal ion complexes of peptides and related ligands
-
Sigel, H. and Martin, R. B. (1982) Coordinating properties of the amide bond. Stability and structure of metal ion complexes of peptides and related ligands Chem. Rev. 82, 385-426
-
(1982)
Chem. Rev.
, vol.82
, pp. 385-426
-
-
Sigel, H.1
Martin, R.B.2
-
39
-
-
0037031561
-
AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides
-
Masuda, S. and Bauer, C. E. (2002) AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides Cell 110, 613-623
-
(2002)
Cell
, vol.110
, pp. 613-623
-
-
Masuda, S.1
Bauer, C.E.2
-
40
-
-
30144431572
-
On the mechanism of activation of the BLUF domain of AppA
-
Laan, W., Gauden, M., Yeremenko, S., van Grondelle, R., Kennis, J. T., and Hellingwerf, K. J. (2006) On the mechanism of activation of the BLUF domain of AppA Biochemistry 45, 51-60
-
(2006)
Biochemistry
, vol.45
, pp. 51-60
-
-
Laan, W.1
Gauden, M.2
Yeremenko, S.3
Van Grondelle, R.4
Kennis, J.T.5
Hellingwerf, K.J.6
-
41
-
-
37849021588
-
Ultrafast structural dynamics in BLUF domains: Transient infrared spectroscopy of AppA and its mutants
-
Stelling, A. L., Ronayne, K. L., Nappa, J., Tonge, P. J., and Meech, S. R. (2007) Ultrafast structural dynamics in BLUF domains: Transient infrared spectroscopy of AppA and its mutants J. Am. Chem. Soc. 129, 15556-15564
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 15556-15564
-
-
Stelling, A.L.1
Ronayne, K.L.2
Nappa, J.3
Tonge, P.J.4
Meech, S.R.5
-
42
-
-
43849105414
-
Molecular models predict light-induced glutamine tautomerization in BLUF photoreceptors
-
Domratcheva, T., Grigorenko, B. L., Schlichting, I., and Nemukhin, A. V. (2008) Molecular models predict light-induced glutamine tautomerization in BLUF photoreceptors Biophys. J. 94, 3872-3879
-
(2008)
Biophys. J.
, vol.94
, pp. 3872-3879
-
-
Domratcheva, T.1
Grigorenko, B.L.2
Schlichting, I.3
Nemukhin, A.V.4
-
43
-
-
51949088672
-
A conclusive mechanism of the photoinduced reaction cascade in blue light using flavin photoreceptors. A QM/MM study on the fast photocycle of blue light using flavin photoreceptors in their light-adapted/active form
-
Sadeghian, K., Bocola, M., and Schutz, M. (2008) A conclusive mechanism of the photoinduced reaction cascade in blue light using flavin photoreceptors. A QM/MM study on the fast photocycle of blue light using flavin photoreceptors in their light-adapted/active form J. Am. Chem. Soc. 130, 12501-12513
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 12501-12513
-
-
Sadeghian, K.1
Bocola, M.2
Schutz, M.3
-
44
-
-
77955104039
-
A QM/MM study on the fast photocycle of blue light using flavin photoreceptors in their light-adapted/active form
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Sadeghian, K., Bocola, M., and Schutz, M. (2010) A QM/MM study on the fast photocycle of blue light using flavin photoreceptors in their light-adapted/active form Phys. Chem. Chem. Phys. 12, 8840-8846
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(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 8840-8846
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Sadeghian, K.1
Bocola, M.2
Schutz, M.3
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