Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach

Genome Research

Volumn 23, Issue 11, 2013, Pages 1928-1937

  Meyer, Pablo ^a   Siwo, Geoffrey ^b   Zeevi, Danny ^c   Sharon, Eilon ^d   Norel, Raquel ^a   Segal, Eran ^d   Stolovitzky, Gustavo ^a   Rider, Andrew K ^b   Tan, Asako ^b   Pinapati, Richard S ^b   Emrich, Scott ^b   Chawla, Nitesh ^b   Ferdig, Michael T ^b   Tung, Yi An ^e   Chen, Yong Syuan ^e   Chen, Mei Ju May ^e   Chen, Chien Yu ^e   Knight, Jason M ^f   Sahraeian, Sayed Mohammad Ebrahim ^f   Esfahani, Mohammad Shahrokh ^f   Dreos, Rene ^g   Bucher, Philipp ^g   Maier, Ezekiel ^h   Saeys, Yvan ⁱ   Szczurek, Ewa ^j   Myšicková, Alena ^j   Vingron, Martin ^j   Klein, Holger ^k   Kielbasa, Szymon M ^j,l   Knisley, Jeff ^m   Bonnell, Jeff ^m   Knisley, Debra ^m   Kursa, Miron B ⁿ   Rudnicki, Witold R ⁿ   Bhattacharjee, Madhuchhanda ^o   Sillanpää, Mikko J ^p   Yeung, James ^q   Meysman, Pieter ^r,s   Rodríguez, Aminael Sánchez ^r   Engelen, Kristof ^r,t   Marchal, Kathleen ^i,r   Huang, Yezhou ^u   Mordelet, Fantine ^u   Hartemink, Alexander ^u   Pinello, Luca ^v   Yuan, Guo Cheng ^v   more..

^a IBM T J WATSON RESEARCH CENTER   (United States)

^b UNIVERSITY OF NOTRE DAME   (United States)

^c PRINCETON UNIVERSITY   (United States)

^d WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^e NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^f Department of Electrical and Computer Engineering   (United States)

^g EPFL   (Switzerland)

^h WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

ⁱ GHENT UNIVERSITY   (Belgium)

^j MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^k INSTITUTE OF MOLECULAR BIOLOGY   (Germany)

^l CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

^m EAST TENNESSEE STATE UNIVERSITY   (United States)

ⁿ UNIVERSITY OF WARSAW   (Poland)

^o UNIVERSITY OF HYDERABAD   (India)

^p UNIVERSITY OF OULU   (Finland)

^q MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^r UNIVERSITY OF LEUVEN   (Belgium)

^s UNIVERSITY OF ANTWERP   (Belgium)

^t RESEARCH AND INNOVATION CENTRE   (Italy)

^u Duke University   (United States)

^v HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RIBOSOME PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; TRANSCRIPTION FACTOR;

ALGORITHM; ARTICLE; BINDING SITE; CROWDSOURCING; DNA SEQUENCE; FLUORESCENCE ANALYSIS; FUNGAL GENE; GENE EXPRESSION; INDUCED MUTATION; MACHINE LEARNING; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOSOME; PREDICTIVE VALUE; PRIORITY JOURNAL; PROMOTER REGION; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; SUPPORT VECTOR MACHINE; SYSTEMS BIOLOGY; TATA BOX; WILD TYPE;

SACCHAROMYCES CEREVISIAE;

ALGORITHMS; BINDING SITES; CROWDSOURCING; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; GENE REGULATORY NETWORKS; GENES, FUNGAL; MODELS, GENETIC; MUTATION; PROMOTER REGIONS, GENETIC; REGULATORY ELEMENTS, TRANSCRIPTIONAL; RIBOSOMAL PROTEINS; RIBOSOMES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SYSTEMS BIOLOGY;

EID: 84887477282     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.157420.113     Document Type: Article

References (7)

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