MicroRNAs with analogous target complementarities perform with highly variable efficacies in Arabidopsis

FEBS Letters

Volumn 587, Issue 22, 2013, Pages 3703-3708

  Deveson, Ira ^a   Li, Junyan ^a   Millar, Anthony A ^a  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

Author keywords

amiRNAs; Arabidopsis; Efficacy; Gene silencing; miR159; miRNA abundance; MYB33 65

Indexed keywords

ARTIFICIAL MIRNA; MICRORNA; MICRORNA 159; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; GENE; GENE EXPRESSION; GENE SILENCING; GENE TARGETING; GENETIC COMPLEMENTATION; LOSS OF FUNCTION MUTATION; MYB33 GENE; MYB65 GENE; NONHUMAN; PRIORITY JOURNAL;

AMIRNAS; ARABIDOPSIS; EFFICACY; GENE SILENCING; MIR159; MIRNA ABUNDANCE; MYB33/65;

ARABIDOPSIS PROTEINS; BASE SEQUENCE; BINDING SITES; GENE EXPRESSION; GENE EXPRESSION REGULATION, PLANT; MICRORNAS; RNA INTERFERENCE; THERMODYNAMICS; TRANSCRIPTION FACTORS;

ARABIDOPSIS;

EID: 84887406913     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2013.09.037     Document Type: Article

References (21)

1. R.W. Carthew, and E.J. Sontheimer Origins and mechanisms of miRNAs and siRNAs Cell 136 2009 642 655
2. R. Schwab, J.F. Palatnik, M. Riester, C. Schommer, M. Schmid, and D. Weigel Specific effects of microRNAs on the plant transcriptome Dev. Cell 8 2005 517 527
3. J.F. Palatnik, H. Wollmann, C. Schommer, R. Schwab, J. Boisbouvier, R. Rodriguez, N. Warthmann, E. Allen, T. Dezulian, D. Huson, J.C. Carrington, and D. Weigel Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319 Dev. Cell 13 2007 115 125
4. R. Schwab, S. Ossowski, M. Riester, N. Warthmann, and D. Weigel Highly specific gene silencing by artificial microRNAs in Arabidopsis Plant Cell 18 2006 1121 1133
5. S. Ossowski, R. Schwab, and D. Weigel Gene silencing in plants using artificial microRNAs and other small RNAs Plant J. 53 2008 674 690
6. N. Warthmann, H. Chen, S. Ossowski, D. Weigel, and P. Herve Highly specific gene silencing by artificial miRNAs in rice PLoS One 3 2008 e1829
7. J.F. Li, H.S. Chung, Y. Niu, J. Bush, M. McCormack, and J. Sheen Comprehensive protein-based artificial microRNA screens for effective gene silencing in plants Plant Cell 25 2013 1507 1522
8. B. Bhagwat, M. Chi, L. Su, H. Tang, G. Tang, and Y. Xiang An in vivo transient expression system can be applied for rapid and effective selection of artificial microRNA constructs for plant stable genetic transformation J. Genet. Genomics 40 2013 261 270
9. M. Kertesz, N. Iovino, U. Unnerstall, U. Gaul, and E. Segal The role of site accessibility in microRNA target recognition Nat. Genet. 39 2007 1278 1284
10. R.S. Allen, J. Li, M.I. Stahle, A. Dubroue, F. Gubler, and A.A. Millar Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family Proc. Natl. Acad. Sci. USA 104 2007 16371 16376
11. Y. Zhang MiRU: an automated plant miRNA target prediction server Nucleic Acids Res. 33 2005 W701 W704
12. X. Dai, and P.X. Zhao PsRNATarget: a plant small RNA target analysis server Nucleic Acids Res. 39 2011 W155 W159
13. S. Mi, T. Cai, Y. Hu, Y. Chen, E. Hodges, F. Ni, L. Wu, S. Li, H. Zhou, C. Long, S. Chen, G.J. Hannon, and Y. Qi Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5′ terminal nucleotide Cell 133 2008 116 127
14. A.L. Eamens, N.A. Smith, S.J. Curtin, M.B. Wang, and P.M. Waterhouse The Arabidopsis thaliana double stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes RNA 15 2009 2219 2235
15. M.M. Alonso-Peral, J. Li, Y. Li, R.S. Allen, W. Schnippenkoetter, S. Ohms, R.G. White, and A.A. Millar The microRNA159-regulated GAMYB-like genes inhibit growth and promote programmed cell death in Arabidopsis Plant Physiol. 154 2010 757 771
16. R. Rajagopalan, H. Vaucheret, J. Trejo, and D.P. Bartel A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana Genes Dev. 20 2006 3407 3425
17. W. Gu, X. Wang, C. Zhai, X. Xie, and T. Zhou Selection on synonymous sites for increased accessibility around miRNA binding sites in plants Mol. Biol. Evol. 29 2012 3037 3044
18. F. Li, Q. Zheng, L.E. Vandivier, M.R. Willmann, Y. Chen, and B.D. Gregory Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome Plant Cell 24 2012 4346 4359
19. R.S. Allen, J. Li, M.M. Alonso-Peral, R.G. White, F. Gubler, and A.A. Millar MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects Silence 1 2010 18
20. M. Kedde, M.J. Strasser, B. Boldajipour, J.A. Oude Vrielink, K. Slanchev, C. le Sage, R. Nagel, P.M. Voorhoeve, J. van Duijse, and U.A. Orom RNA-binding protein Dnd1 inhibits microRNA access to target mRNA Cell 131 2007 1273 1286
21. S.J. Clough, and A.F. Bent Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana Plant J. 16 1998 735 743